Wall clock time and date at job start Fri Apr 10 2020 22:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47077 * 2 1 4 4 C 1.53006 * 109.47352 * 64.99791 * 3 2 1 5 5 C 1.52995 * 109.46995 * 184.72636 * 4 3 2 6 6 C 1.52999 * 109.47407 * 184.99932 * 3 2 1 7 7 N 1.46503 * 109.47316 * 64.45490 * 6 3 2 8 8 C 1.46508 * 119.99752 * 262.56954 * 7 6 3 9 9 C 1.50694 * 109.46879 * 271.58584 * 8 7 6 10 10 H 1.07995 * 120.00594 * 359.97438 * 9 8 7 11 11 C 1.37882 * 119.99715 * 179.97438 * 9 8 7 12 12 N 1.31511 * 119.99841 * 0.02562 * 11 9 8 13 13 Si 1.86799 * 119.99773 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.46844 * 90.00420 * 13 11 9 15 15 H 1.48502 * 109.46964 * 209.99876 * 13 11 9 16 16 H 1.48496 * 109.47404 * 330.00032 * 13 11 9 17 17 C 1.34774 * 120.00293 * 82.56214 * 7 6 3 18 18 O 1.21280 * 119.99660 * 4.41587 * 17 7 6 19 19 C 1.50699 * 119.99977 * 184.13521 * 17 7 6 20 20 H 1.09002 * 110.43539 * 307.46787 * 19 17 7 21 21 C 1.54632 * 110.48651 * 184.78207 * 19 17 7 22 22 C 1.54479 * 101.76504 * 266.12164 * 21 19 17 23 23 N 1.46767 * 105.47241 * 334.58348 * 22 21 19 24 24 C 1.46498 * 124.34475 * 196.99451 * 23 22 21 25 25 C 1.34419 * 111.30018 * 17.01538 * 23 22 21 26 26 O 1.21279 * 124.93732 * 179.55615 * 25 23 22 27 27 H 1.09001 * 109.47418 * 60.00436 * 1 2 3 28 28 H 1.08998 * 109.46859 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47454 * 300.00357 * 1 2 3 30 30 H 1.09004 * 109.47613 * 239.99999 * 2 1 3 31 31 H 1.09001 * 109.47418 * 119.99564 * 2 1 3 32 32 H 1.09003 * 109.47438 * 304.99842 * 3 2 1 33 33 H 1.08994 * 109.46901 * 304.72966 * 4 3 2 34 34 H 1.09000 * 109.46338 * 64.72713 * 4 3 2 35 35 H 1.09000 * 109.47275 * 61.80047 * 5 4 3 36 36 H 1.09007 * 109.46923 * 181.79366 * 5 4 3 37 37 H 1.08997 * 109.47694 * 301.79287 * 5 4 3 38 38 H 1.08997 * 109.47369 * 304.45218 * 6 3 2 39 39 H 1.09001 * 109.47770 * 184.45058 * 6 3 2 40 40 H 1.09007 * 109.47095 * 31.58595 * 8 7 6 41 41 H 1.09001 * 109.47053 * 151.57968 * 8 7 6 42 42 H 0.97003 * 119.99741 * 179.97438 * 12 11 9 43 43 H 1.09003 * 110.96507 * 24.24026 * 21 19 17 44 44 H 1.09002 * 110.96718 * 147.99821 * 21 19 17 45 45 H 1.08997 * 110.24648 * 215.58155 * 22 21 19 46 46 H 1.09000 * 110.24361 * 93.58254 * 22 21 19 47 47 H 1.09004 * 109.46831 * 179.97438 * 24 23 22 48 48 H 1.08997 * 109.47146 * 300.00102 * 24 23 22 49 49 H 1.08998 * 109.47165 * 60.00446 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.6351 2.1266 1.3074 5 6 2.0414 3.6008 1.2585 6 6 3.5647 1.4444 -0.1257 7 7 3.9484 0.8858 -1.4246 8 6 4.3418 -0.5215 -1.5294 9 6 5.8228 -0.6488 -1.2820 10 1 6.4123 0.2305 -1.0685 11 6 6.4254 -1.8882 -1.3282 12 7 5.7077 -2.9590 -1.5886 13 14 8.2614 -2.0459 -1.0222 14 1 8.5053 -2.2567 0.4274 15 1 8.7931 -3.2025 -1.7869 16 1 8.9454 -0.8040 -1.4638 17 6 3.9394 1.6666 -2.5231 18 8 3.6915 2.8497 -2.4242 19 6 4.2434 1.0708 -3.8735 20 1 5.1850 0.5224 -3.8443 21 6 4.2906 2.1756 -4.9543 22 6 2.8446 2.1471 -5.4973 23 7 2.3530 0.7901 -5.2306 24 6 1.1804 0.1943 -5.8757 25 6 3.1166 0.1646 -4.3183 26 8 2.9291 -0.9620 -3.9105 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.6053 1.9816 -0.8418 33 1 0.5556 2.0513 1.4377 34 1 2.1369 1.6389 2.1430 35 1 1.5151 4.0959 0.4424 36 1 1.7817 4.0807 2.2022 37 1 3.1166 3.6763 1.0963 38 1 3.9958 0.8391 0.6717 39 1 3.9347 2.4666 -0.0464 40 1 3.7979 -1.1070 -0.7880 41 1 4.1069 -0.8911 -2.5276 42 1 6.1318 -3.8308 -1.6215 43 1 4.5221 3.1445 -4.5118 44 1 5.0064 1.9250 -5.7373 45 1 2.8401 2.3461 -6.5689 46 1 2.2308 2.8803 -4.9741 47 1 1.0350 -0.8188 -5.5006 48 1 0.2986 0.7948 -5.6525 49 1 1.3354 0.1633 -6.9541 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614267326.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:26 Heat of formation + Delta-G solvation = -79.095975 kcal Electronic energy + Delta-G solvation = -28401.987856 eV Core-core repulsion = 24749.815550 eV Total energy + Delta-G solvation = -3652.172306 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65745 -38.66858 -36.91431 -36.02888 -34.36718 -32.50765 -32.33798 -31.47906 -28.66407 -27.53652 -26.57171 -26.46289 -24.10036 -23.01083 -22.29243 -21.69289 -19.79263 -19.47767 -18.21758 -16.92386 -16.43394 -16.40871 -15.68244 -15.40298 -14.91176 -14.47523 -14.36611 -14.03814 -13.97664 -13.75624 -13.48574 -13.24980 -12.92476 -12.72246 -12.48980 -12.41855 -12.31045 -12.14502 -12.04607 -11.66530 -11.42452 -11.40689 -11.18588 -10.99825 -10.98030 -10.91823 -10.82779 -10.60713 -10.33371 -10.12331 -10.02254 -9.88645 -9.61271 -9.20015 -9.04528 -8.49693 -8.34550 -7.55652 -6.02029 -4.09672 2.82607 3.13990 3.28564 3.35464 3.37383 3.44866 3.98398 4.42319 4.68113 4.73306 5.05004 5.11521 5.19691 5.25330 5.29388 5.33337 5.39776 5.42957 5.53042 5.55247 5.62188 5.66483 5.74686 5.79264 5.91217 5.97978 6.04059 6.06708 6.11689 6.13500 6.19706 6.28093 6.29291 6.35357 6.44532 6.51577 6.63401 6.70232 6.75336 6.86918 7.00326 7.25735 7.58578 7.75449 7.90019 8.23217 8.40726 8.54617 8.88676 9.04733 9.55341 11.03591 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.008675 B = 0.006968 C = 0.005004 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3226.943259 B = 4017.607421 C = 5594.458703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.099 4.099 4 C -0.116 4.116 5 C -0.152 4.152 6 C 0.123 3.877 7 N -0.580 5.580 8 C 0.202 3.798 9 C -0.542 4.542 10 H 0.057 0.943 11 C 0.065 3.935 12 N -0.882 5.882 13 Si 0.891 3.109 14 H -0.280 1.280 15 H -0.286 1.286 16 H -0.274 1.274 17 C 0.533 3.467 18 O -0.569 6.569 19 C -0.145 4.145 20 H 0.140 0.860 21 C -0.119 4.119 22 C 0.107 3.893 23 N -0.629 5.629 24 C 0.097 3.903 25 C 0.528 3.472 26 O -0.490 6.490 27 H 0.046 0.954 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.075 0.925 31 H 0.060 0.940 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.046 0.954 37 H 0.058 0.942 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.034 0.966 41 H 0.089 0.911 42 H 0.263 0.737 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.074 0.926 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.056 0.944 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.728 9.369 -4.323 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C -0.118 4.118 4 C -0.154 4.154 5 C -0.209 4.209 6 C -0.001 4.001 7 N -0.307 5.307 8 C 0.083 3.917 9 C -0.580 4.580 10 H 0.075 0.925 11 C -0.138 4.138 12 N -0.520 5.520 13 Si 0.719 3.281 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C 0.319 3.681 18 O -0.451 6.451 19 C -0.169 4.169 20 H 0.157 0.843 21 C -0.157 4.157 22 C -0.016 4.016 23 N -0.365 5.365 24 C -0.045 4.045 25 C 0.314 3.686 26 O -0.363 6.363 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.077 0.923 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.052 0.948 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.123 0.877 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.101 0.899 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.014 9.068 -4.082 13.422 hybrid contribution 1.132 -0.342 0.193 1.198 sum -7.883 8.726 -3.889 12.386 Atomic orbital electron populations 1.21783 0.96754 1.00978 1.00929 1.21644 0.94920 0.96401 1.03128 1.21554 0.96490 0.96128 0.97655 1.21545 1.00777 0.95552 0.97494 1.21809 1.02054 0.96264 1.00759 1.21433 0.93341 0.99368 0.85914 1.48230 1.62643 1.13909 1.05964 1.20299 0.94850 0.74136 1.02380 1.21527 0.93583 0.93270 1.49661 0.92489 1.24925 0.98021 0.95705 0.95140 1.69975 1.35566 0.98505 1.47962 0.86614 0.85532 0.77695 0.78286 1.20657 1.21148 1.19897 1.19514 0.77330 0.85938 0.85310 1.90569 1.52222 1.15714 1.86615 1.22074 1.01732 0.98289 0.94819 0.84257 1.22555 0.95728 1.00368 0.97008 1.22042 0.95489 0.83428 1.00613 1.48135 1.29371 1.15760 1.43248 1.21487 0.86478 0.99603 0.96931 1.20389 0.83057 0.86552 0.78577 1.90747 1.71749 1.17662 1.56187 0.93460 0.93174 0.93089 0.90616 0.92141 0.91446 0.92052 0.92084 0.92935 0.93444 0.92254 0.90376 0.91102 0.94769 0.89419 0.92760 0.87743 0.89845 0.90739 0.90961 0.89908 0.92493 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.15 0.36 -1.76 16 2 C -0.12 -2.12 4.80 -26.74 -0.13 -2.25 16 3 C -0.10 -1.65 2.01 -90.62 -0.18 -1.83 16 4 C -0.12 -1.59 5.27 -26.73 -0.14 -1.73 16 5 C -0.15 -1.98 9.71 37.16 0.36 -1.62 16 6 C 0.12 2.35 4.66 -4.04 -0.02 2.33 16 7 N -0.58 -12.57 2.14 -175.05 -0.37 -12.94 16 8 C 0.20 5.07 3.86 -5.19 -0.02 5.05 16 9 C -0.54 -14.65 9.34 -34.44 -0.32 -14.98 16 10 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 11 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 12 N -0.88 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 C 0.53 11.05 6.94 -10.99 -0.08 10.97 16 18 O -0.57 -12.02 15.19 5.56 0.08 -11.93 16 19 C -0.14 -2.70 2.39 -91.78 -0.22 -2.92 16 20 H 0.14 2.83 7.72 -51.93 -0.40 2.43 16 21 C -0.12 -1.65 6.46 -25.10 -0.16 -1.81 16 22 C 0.11 1.33 7.34 -3.12 -0.02 1.31 16 23 N -0.63 -9.46 3.33 -180.29 -0.60 -10.07 16 24 C 0.10 1.16 11.14 59.85 0.67 1.82 16 25 C 0.53 10.16 7.08 -10.86 -0.08 10.09 16 26 O -0.49 -11.35 14.43 5.56 0.08 -11.27 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.64 6.47 -51.93 -0.34 0.31 16 30 H 0.08 1.56 6.03 -51.93 -0.31 1.24 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 1.23 8.13 -51.93 -0.42 0.81 16 33 H 0.06 0.77 6.35 -51.93 -0.33 0.44 16 34 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.83 6.38 -51.93 -0.33 0.49 16 38 H 0.08 1.53 8.02 -51.93 -0.42 1.11 16 39 H 0.07 1.34 5.77 -51.93 -0.30 1.05 16 40 H 0.03 0.92 6.69 -51.93 -0.35 0.57 16 41 H 0.09 2.34 3.37 -51.93 -0.17 2.16 16 42 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 43 H 0.10 1.48 7.03 -51.93 -0.37 1.11 16 44 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 47 H 0.08 1.11 7.53 -51.93 -0.39 0.72 16 48 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -31.62 380.54 -7.76 -39.39 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -8.32 Total: 5.42 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -0.08 Total: 4.41 kcal Atomic # 7 Polarization: -47.64 SS G_CDS: -0.24 Total: -47.88 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: 0.16 Total: -23.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.62 -7.76 -39.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614267326.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.709 kcal (2) G-P(sol) polarization free energy of solvation -31.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds