Wall clock time and date at job start Fri Apr 10 2020 22:28:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47203 * 2 1 4 4 C 1.53001 * 109.46993 * 293.66566 * 3 2 1 5 5 C 1.53001 * 109.46991 * 303.56413 * 4 3 2 6 6 C 1.52989 * 109.47143 * 173.66318 * 3 2 1 7 7 N 1.46506 * 109.47178 * 184.65063 * 6 3 2 8 8 C 1.46508 * 119.99738 * 264.95468 * 7 6 3 9 9 C 1.50699 * 109.46840 * 278.04645 * 8 7 6 10 10 H 1.07998 * 120.00230 * 4.32907 * 9 8 7 11 11 C 1.37880 * 119.99669 * 184.33500 * 9 8 7 12 12 N 1.31515 * 119.99769 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99966 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46750 * 90.00447 * 13 11 9 15 15 H 1.48497 * 109.46969 * 209.99901 * 13 11 9 16 16 H 1.48491 * 109.47038 * 330.00221 * 13 11 9 17 17 C 1.34767 * 120.00064 * 84.95223 * 7 6 3 18 18 O 1.21285 * 119.99970 * 6.44177 * 17 7 6 19 19 C 1.50698 * 120.00067 * 186.44074 * 17 7 6 20 20 H 1.09002 * 110.43499 * 56.18894 * 19 17 7 21 21 C 1.54637 * 110.48850 * 178.72774 * 19 17 7 22 22 C 1.54480 * 101.76162 * 93.87727 * 21 19 17 23 23 N 1.46761 * 105.47324 * 25.42370 * 22 21 19 24 24 C 1.46505 * 124.35230 * 162.98332 * 23 22 21 25 25 C 1.34740 * 111.35329 * 343.01002 * 23 22 21 26 26 O 1.21286 * 125.12894 * 180.39282 * 25 23 22 27 27 H 1.09000 * 109.46726 * 305.41160 * 1 2 3 28 28 H 1.09002 * 109.46802 * 65.40568 * 1 2 3 29 29 H 1.08999 * 109.46892 * 185.40756 * 1 2 3 30 30 H 1.08995 * 109.47063 * 240.00255 * 2 1 3 31 31 H 1.09001 * 109.46683 * 119.99720 * 2 1 3 32 32 H 1.09002 * 109.47444 * 53.65998 * 3 2 1 33 33 H 1.08999 * 109.47386 * 63.56147 * 4 3 2 34 34 H 1.09000 * 109.47098 * 183.56269 * 4 3 2 35 35 H 1.09003 * 109.47310 * 305.36387 * 5 4 3 36 36 H 1.08992 * 109.47116 * 65.36729 * 5 4 3 37 37 H 1.09005 * 109.46922 * 185.36584 * 5 4 3 38 38 H 1.08998 * 109.47578 * 304.64827 * 6 3 2 39 39 H 1.09006 * 109.47331 * 64.65596 * 6 3 2 40 40 H 1.08997 * 109.47096 * 38.05109 * 8 7 6 41 41 H 1.09003 * 109.46683 * 158.04782 * 8 7 6 42 42 H 0.97005 * 119.99567 * 180.02562 * 12 11 9 43 43 H 1.08992 * 110.97279 * 211.99971 * 21 19 17 44 44 H 1.09000 * 110.96559 * 335.76285 * 21 19 17 45 45 H 1.09005 * 110.24226 * 144.41871 * 22 21 19 46 46 H 1.08994 * 110.25215 * 266.41753 * 22 21 19 47 47 H 1.08994 * 109.47415 * 89.98794 * 24 23 22 48 48 H 1.08997 * 109.46756 * 209.99810 * 24 23 22 49 49 H 1.09002 * 109.46666 * 329.99267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6642 2.1163 -1.3212 5 6 2.2256 1.3006 -2.4875 6 6 3.5617 1.4454 0.1592 7 7 4.0384 2.8263 0.2707 8 6 4.5129 3.5358 -0.9201 9 6 5.9423 3.1485 -1.1992 10 1 6.4245 2.3927 -0.5969 11 6 6.6345 3.7591 -2.2234 12 7 7.8818 3.4208 -2.4674 13 14 5.8002 5.0659 -3.2655 14 1 6.0200 6.4013 -2.6541 15 1 6.3744 5.0480 -4.6349 16 1 4.3434 4.7873 -3.3358 17 6 4.0404 3.4438 1.4685 18 8 3.7593 2.8226 2.4715 19 6 4.3920 4.9063 1.5617 20 1 3.7388 5.4964 0.9189 21 6 4.2947 5.3941 3.0259 22 6 5.7514 5.2253 3.5115 23 7 6.5792 5.3078 2.3025 24 6 8.0232 5.5556 2.3046 25 6 5.8416 5.1272 1.1895 26 8 6.2737 5.1388 0.0563 27 1 -0.3633 0.5955 0.8376 28 1 -0.3633 0.4277 -0.9345 29 1 -0.3633 -1.0231 0.0968 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5871 1.9881 0.8278 33 1 0.5788 2.1710 -1.4053 34 1 2.0818 3.1228 -1.3475 35 1 3.2988 1.1650 -2.3529 36 1 1.7374 0.3266 -2.5179 37 1 2.0407 1.8291 -3.4228 38 1 3.8340 0.8934 1.0587 39 1 4.0189 0.9723 -0.7099 40 1 3.8906 3.2687 -1.7742 41 1 4.4543 4.6108 -0.7499 42 1 8.3689 3.8507 -3.1877 43 1 3.9876 6.4390 3.0694 44 1 3.6160 4.7653 3.6022 45 1 6.0134 6.0257 4.2035 46 1 5.8793 4.2547 3.9907 47 1 8.5548 4.6055 2.3551 48 1 8.3030 6.0806 1.3913 49 1 8.2859 6.1653 3.1692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000614267327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:28 Heat of formation + Delta-G solvation = -59.642858 kcal Electronic energy + Delta-G solvation = -28679.811220 eV Core-core repulsion = 25028.482464 eV Total energy + Delta-G solvation = -3651.328756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.50113 -38.65284 -37.10355 -35.79812 -34.37123 -32.35533 -32.20011 -30.91491 -29.02722 -27.83903 -26.64379 -26.21555 -24.19338 -23.21769 -22.42795 -21.53262 -19.53846 -18.81068 -18.09163 -16.98293 -16.71130 -16.11384 -15.61813 -15.43056 -15.06799 -14.77875 -14.69373 -14.05069 -13.66808 -13.51956 -13.24483 -13.02064 -12.89316 -12.65451 -12.54117 -12.26621 -12.21188 -12.08668 -11.86351 -11.78539 -11.46903 -11.42615 -11.24175 -11.08364 -11.05381 -10.83069 -10.69644 -10.50572 -10.30808 -10.10653 -10.02061 -9.99428 -9.39609 -9.14004 -8.82214 -8.45091 -8.01253 -7.65829 -5.93928 -3.84203 3.02112 3.34789 3.41601 3.46707 3.50573 3.61948 3.88497 4.55962 4.73215 4.84507 5.00791 5.09754 5.14042 5.19050 5.35084 5.44458 5.45224 5.50430 5.57772 5.62965 5.64275 5.73183 5.77103 5.91143 5.93040 5.95609 6.00368 6.07405 6.09051 6.12441 6.14571 6.17184 6.28009 6.33224 6.37382 6.47583 6.54466 6.57390 6.71456 6.81037 6.93653 7.09899 7.42683 7.69061 7.73576 8.16283 8.60418 8.83113 8.98018 9.07243 9.70522 11.20073 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.007040 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.369575 B = 3976.426501 C = 5785.383466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.100 4.100 4 C -0.120 4.120 5 C -0.158 4.158 6 C 0.123 3.877 7 N -0.579 5.579 8 C 0.200 3.800 9 C -0.495 4.495 10 H 0.067 0.933 11 C 0.097 3.903 12 N -0.899 5.899 13 Si 0.874 3.126 14 H -0.273 1.273 15 H -0.294 1.294 16 H -0.271 1.271 17 C 0.532 3.468 18 O -0.564 6.564 19 C -0.143 4.143 20 H 0.117 0.883 21 C -0.117 4.117 22 C 0.111 3.889 23 N -0.636 5.636 24 C 0.109 3.891 25 C 0.489 3.511 26 O -0.423 6.423 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.048 0.952 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.042 0.958 42 H 0.260 0.740 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.049 0.951 48 H 0.073 0.927 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.096 1.635 8.082 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.157 4.157 3 C -0.120 4.120 4 C -0.157 4.157 5 C -0.215 4.215 6 C 0.000 4.000 7 N -0.307 5.307 8 C 0.079 3.921 9 C -0.533 4.533 10 H 0.086 0.914 11 C -0.105 4.105 12 N -0.538 5.538 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.220 1.220 16 H -0.196 1.196 17 C 0.318 3.682 18 O -0.445 6.445 19 C -0.167 4.167 20 H 0.135 0.865 21 C -0.155 4.155 22 C -0.012 4.012 23 N -0.375 5.375 24 C -0.033 4.033 25 C 0.273 3.727 26 O -0.291 6.291 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.119 0.881 45 H 0.088 0.912 46 H 0.084 0.916 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.750 1.362 7.765 12.538 hybrid contribution -0.146 0.785 -0.581 0.988 sum -9.896 2.147 7.184 12.416 Atomic orbital electron populations 1.21765 0.96198 1.00946 1.01654 1.21549 0.95578 0.96489 1.02106 1.21565 0.96404 0.96049 0.97937 1.21586 0.99722 1.00056 0.94369 1.21917 1.02446 0.99455 0.97659 1.21435 0.92527 0.83403 1.02679 1.47944 1.60456 1.13558 1.08781 1.20257 0.96170 0.93062 0.82577 1.20948 0.94765 1.21805 1.15797 0.91446 1.24571 0.94191 0.95203 0.96549 1.69891 1.09686 1.42978 1.31227 0.86904 0.79776 0.83954 0.79111 1.19894 1.22029 1.19568 1.19695 0.77233 0.87892 0.83363 1.90583 1.51759 1.66565 1.35547 1.21981 0.98474 0.96549 0.99734 0.86485 1.22510 0.97065 1.01805 0.94133 1.21904 0.90196 1.01429 0.87705 1.47994 1.07935 1.74634 1.06955 1.21336 0.79216 1.00646 1.02118 1.20277 0.87105 0.80097 0.85225 1.91095 1.75731 1.43337 1.18917 0.93022 0.92728 0.93249 0.91400 0.92167 0.91380 0.92760 0.91477 0.91217 0.93004 0.93309 0.91243 0.89610 0.95128 0.93991 0.93033 0.90179 0.88110 0.91234 0.91645 0.93241 0.90872 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.56 37.16 0.36 -1.27 16 2 C -0.12 -1.52 5.13 -26.73 -0.14 -1.66 16 3 C -0.10 -1.52 2.32 -90.62 -0.21 -1.73 16 4 C -0.12 -1.78 4.90 -26.73 -0.13 -1.91 16 5 C -0.16 -2.32 8.60 37.16 0.32 -2.00 16 6 C 0.12 2.25 4.70 -4.04 -0.02 2.23 16 7 N -0.58 -11.95 2.19 -175.06 -0.38 -12.33 16 8 C 0.20 4.59 2.95 -5.19 -0.02 4.57 16 9 C -0.50 -13.62 7.37 -34.44 -0.25 -13.88 16 10 H 0.07 2.11 8.06 -52.49 -0.42 1.69 16 11 C 0.10 2.79 4.54 -17.82 -0.08 2.71 16 12 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 13 Si 0.87 21.99 26.54 -169.99 -4.51 17.47 16 14 H -0.27 -6.97 7.11 56.52 0.40 -6.56 16 15 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 16 H -0.27 -6.36 6.67 56.52 0.38 -5.98 16 17 C 0.53 10.68 7.04 -10.99 -0.08 10.60 16 18 O -0.56 -11.86 15.11 5.55 0.08 -11.78 16 19 C -0.14 -2.54 2.40 -91.78 -0.22 -2.76 16 20 H 0.12 1.92 7.53 -51.93 -0.39 1.53 16 21 C -0.12 -1.60 6.49 -25.09 -0.16 -1.77 16 22 C 0.11 1.54 7.35 -3.12 -0.02 1.52 16 23 N -0.64 -11.08 3.34 -180.19 -0.60 -11.68 16 24 C 0.11 1.69 10.97 59.85 0.66 2.35 16 25 C 0.49 10.08 6.89 -10.72 -0.07 10.01 16 26 O -0.42 -10.56 10.35 5.55 0.06 -10.50 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.58 6.95 -51.93 -0.36 0.22 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.05 0.71 6.90 -51.93 -0.36 0.35 16 34 H 0.07 1.13 5.83 -51.93 -0.30 0.82 16 35 H 0.07 1.18 5.85 -51.93 -0.30 0.87 16 36 H 0.05 0.66 6.54 -51.93 -0.34 0.32 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.07 1.32 7.49 -51.93 -0.39 0.93 16 39 H 0.09 1.63 6.09 -51.93 -0.32 1.31 16 40 H 0.03 0.70 4.74 -51.93 -0.25 0.45 16 41 H 0.04 0.98 3.94 -51.93 -0.20 0.78 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.39 6.98 -51.93 -0.36 1.03 16 45 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.07 1.24 7.94 -51.93 -0.41 0.83 16 49 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 364.30 15.07 5.49 5.49 Total: -1.00 -32.95 364.30 -7.28 -40.24 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -8.12 Total: 2.84 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.07 Total: 7.02 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.21 Total: -50.80 kcal Atomic # 8 Polarization: -22.42 SS G_CDS: 0.14 Total: -22.27 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.51 Total: 17.47 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.95 -7.28 -40.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614267327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.406 kcal (2) G-P(sol) polarization free energy of solvation -32.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds