Wall clock time and date at job start Fri Apr 10 2020 22:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47203 * 2 1 4 4 C 1.53001 * 109.46993 * 293.66566 * 3 2 1 5 5 C 1.53001 * 109.46991 * 303.56413 * 4 3 2 6 6 C 1.52989 * 109.47143 * 173.66318 * 3 2 1 7 7 N 1.46506 * 109.47178 * 184.65063 * 6 3 2 8 8 C 1.46508 * 119.99738 * 264.95468 * 7 6 3 9 9 C 1.50699 * 109.46840 * 278.04645 * 8 7 6 10 10 H 1.07998 * 120.00230 * 4.32907 * 9 8 7 11 11 C 1.37880 * 119.99669 * 184.33500 * 9 8 7 12 12 N 1.31515 * 119.99769 * 180.02562 * 11 9 8 13 13 Si 1.86805 * 119.99966 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.46750 * 90.00447 * 13 11 9 15 15 H 1.48497 * 109.46969 * 209.99901 * 13 11 9 16 16 H 1.48491 * 109.47038 * 330.00221 * 13 11 9 17 17 C 1.34767 * 120.00064 * 84.95223 * 7 6 3 18 18 O 1.21285 * 119.99970 * 6.44177 * 17 7 6 19 19 C 1.50698 * 120.00067 * 186.44074 * 17 7 6 20 20 H 1.09002 * 110.43499 * 56.18894 * 19 17 7 21 21 C 1.54637 * 110.48850 * 178.72774 * 19 17 7 22 22 C 1.54480 * 101.76162 * 93.87727 * 21 19 17 23 23 N 1.46761 * 105.47324 * 25.42370 * 22 21 19 24 24 C 1.46505 * 124.35230 * 162.98332 * 23 22 21 25 25 C 1.34740 * 111.35329 * 343.01002 * 23 22 21 26 26 O 1.21286 * 125.12894 * 180.39282 * 25 23 22 27 27 H 1.09000 * 109.46726 * 305.41160 * 1 2 3 28 28 H 1.09002 * 109.46802 * 65.40568 * 1 2 3 29 29 H 1.08999 * 109.46892 * 185.40756 * 1 2 3 30 30 H 1.08995 * 109.47063 * 240.00255 * 2 1 3 31 31 H 1.09001 * 109.46683 * 119.99720 * 2 1 3 32 32 H 1.09002 * 109.47444 * 53.65998 * 3 2 1 33 33 H 1.08999 * 109.47386 * 63.56147 * 4 3 2 34 34 H 1.09000 * 109.47098 * 183.56269 * 4 3 2 35 35 H 1.09003 * 109.47310 * 305.36387 * 5 4 3 36 36 H 1.08992 * 109.47116 * 65.36729 * 5 4 3 37 37 H 1.09005 * 109.46922 * 185.36584 * 5 4 3 38 38 H 1.08998 * 109.47578 * 304.64827 * 6 3 2 39 39 H 1.09006 * 109.47331 * 64.65596 * 6 3 2 40 40 H 1.08997 * 109.47096 * 38.05109 * 8 7 6 41 41 H 1.09003 * 109.46683 * 158.04782 * 8 7 6 42 42 H 0.97005 * 119.99567 * 180.02562 * 12 11 9 43 43 H 1.08992 * 110.97279 * 211.99971 * 21 19 17 44 44 H 1.09000 * 110.96559 * 335.76285 * 21 19 17 45 45 H 1.09005 * 110.24226 * 144.41871 * 22 21 19 46 46 H 1.08994 * 110.25215 * 266.41753 * 22 21 19 47 47 H 1.08994 * 109.47415 * 89.98794 * 24 23 22 48 48 H 1.08997 * 109.46756 * 209.99810 * 24 23 22 49 49 H 1.09002 * 109.46666 * 329.99267 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.6642 2.1163 -1.3212 5 6 2.2256 1.3006 -2.4875 6 6 3.5617 1.4454 0.1592 7 7 4.0384 2.8263 0.2707 8 6 4.5129 3.5358 -0.9201 9 6 5.9423 3.1485 -1.1992 10 1 6.4245 2.3927 -0.5969 11 6 6.6345 3.7591 -2.2234 12 7 7.8818 3.4208 -2.4674 13 14 5.8002 5.0659 -3.2655 14 1 6.0200 6.4013 -2.6541 15 1 6.3744 5.0480 -4.6349 16 1 4.3434 4.7873 -3.3358 17 6 4.0404 3.4438 1.4685 18 8 3.7593 2.8226 2.4715 19 6 4.3920 4.9063 1.5617 20 1 3.7388 5.4964 0.9189 21 6 4.2947 5.3941 3.0259 22 6 5.7514 5.2253 3.5115 23 7 6.5792 5.3078 2.3025 24 6 8.0232 5.5556 2.3046 25 6 5.8416 5.1272 1.1895 26 8 6.2737 5.1388 0.0563 27 1 -0.3633 0.5955 0.8376 28 1 -0.3633 0.4277 -0.9345 29 1 -0.3633 -1.0231 0.0968 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.5871 1.9881 0.8278 33 1 0.5788 2.1710 -1.4053 34 1 2.0818 3.1228 -1.3475 35 1 3.2988 1.1650 -2.3529 36 1 1.7374 0.3266 -2.5179 37 1 2.0407 1.8291 -3.4228 38 1 3.8340 0.8934 1.0587 39 1 4.0189 0.9723 -0.7099 40 1 3.8906 3.2687 -1.7742 41 1 4.4543 4.6108 -0.7499 42 1 8.3689 3.8507 -3.1877 43 1 3.9876 6.4390 3.0694 44 1 3.6160 4.7653 3.6022 45 1 6.0134 6.0257 4.2035 46 1 5.8793 4.2547 3.9907 47 1 8.5548 4.6055 2.3551 48 1 8.3030 6.0806 1.3913 49 1 8.2859 6.1653 3.1692 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614267327.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:27 Heat of formation + Delta-G solvation = -80.840892 kcal Electronic energy + Delta-G solvation = -28680.730436 eV Core-core repulsion = 25028.482464 eV Total energy + Delta-G solvation = -3652.247972 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.01478 -40.13479 -38.52871 -37.30827 -36.02325 -34.30596 -33.67338 -31.99527 -30.60060 -29.45400 -28.08703 -27.54459 -25.51381 -24.56495 -24.11628 -22.83033 -21.00970 -20.08056 -19.63643 -18.96287 -18.39334 -17.56474 -17.17422 -16.68854 -16.62404 -16.26303 -16.07681 -15.78216 -15.10051 -14.98715 -14.59178 -14.51005 -14.31681 -14.20548 -13.83173 -13.77096 -13.62530 -13.49034 -13.20339 -13.07251 -12.99996 -12.73479 -12.58038 -12.53603 -12.42523 -12.22159 -12.05318 -12.04375 -11.92060 -11.61426 -11.40803 -11.30350 -11.23965 -10.74516 -10.59492 -10.45936 -9.50219 -9.35925 -8.15569 -6.08036 1.34897 1.39337 1.44703 1.45846 1.89454 2.26011 2.32463 2.46207 3.27924 3.44712 3.53156 3.67053 3.91895 3.93653 4.02318 4.10173 4.28194 4.39200 4.41639 4.43831 4.48424 4.58103 4.60663 4.65406 4.70633 4.72193 4.79703 4.83234 4.87435 4.92258 4.95496 4.99800 5.03744 5.08297 5.14756 5.18477 5.32134 5.35156 5.42044 5.47361 5.60722 5.65899 5.74185 5.78881 6.22760 6.26598 6.63279 6.78378 7.19896 7.43458 7.51475 9.02791 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011277 B = 0.007040 C = 0.004839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2482.369575 B = 3976.426501 C = 5785.383466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.117 4.117 3 C -0.088 4.088 4 C -0.117 4.117 5 C -0.155 4.155 6 C 0.120 3.880 7 N -0.587 5.587 8 C 0.218 3.782 9 C -0.479 4.479 10 H 0.012 0.988 11 C 0.044 3.956 12 N -0.951 5.951 13 Si 0.932 3.068 14 H -0.277 1.277 15 H -0.293 1.293 16 H -0.240 1.240 17 C 0.526 3.474 18 O -0.574 6.574 19 C -0.147 4.147 20 H 0.133 0.867 21 C -0.104 4.104 22 C 0.107 3.893 23 N -0.637 5.637 24 C 0.107 3.893 25 C 0.479 3.521 26 O -0.482 6.482 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.080 0.920 34 H 0.047 0.953 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.040 0.960 41 H 0.047 0.953 42 H 0.258 0.742 43 H 0.118 0.882 44 H 0.103 0.897 45 H 0.115 0.885 46 H 0.055 0.945 47 H 0.034 0.966 48 H 0.051 0.949 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.064 2.986 9.254 16.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.107 4.107 4 C -0.154 4.154 5 C -0.212 4.212 6 C -0.002 4.002 7 N -0.315 5.315 8 C 0.097 3.903 9 C -0.517 4.517 10 H 0.031 0.969 11 C -0.153 4.153 12 N -0.593 5.593 13 Si 0.758 3.242 14 H -0.203 1.203 15 H -0.220 1.220 16 H -0.164 1.164 17 C 0.313 3.687 18 O -0.456 6.456 19 C -0.171 4.171 20 H 0.150 0.850 21 C -0.142 4.142 22 C -0.015 4.015 23 N -0.374 5.374 24 C -0.035 4.035 25 C 0.264 3.736 26 O -0.353 6.353 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.136 0.864 44 H 0.121 0.879 45 H 0.133 0.867 46 H 0.074 0.926 47 H 0.052 0.948 48 H 0.070 0.930 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -12.753 2.699 9.002 15.841 hybrid contribution 0.854 0.290 -0.763 1.181 sum -11.899 2.989 8.238 14.778 Atomic orbital electron populations 1.21728 0.94224 1.02076 1.02038 1.21538 0.97190 0.94542 1.02189 1.21445 0.93415 0.97816 0.98031 1.21560 1.01169 0.98757 0.93899 1.21890 1.00705 1.00810 0.97842 1.21538 0.95069 0.82243 1.01376 1.47985 1.60676 1.14301 1.08548 1.19902 0.93301 0.93344 0.83779 1.20958 0.96717 1.19758 1.14312 0.96940 1.25302 0.94576 0.97341 0.98086 1.70050 1.11706 1.45063 1.32530 0.85967 0.80463 0.80756 0.77060 1.20322 1.21995 1.16375 1.20136 0.76727 0.88996 0.82816 1.90568 1.52243 1.67218 1.35588 1.22108 0.96803 0.95033 1.03160 0.84972 1.22599 0.96935 1.03926 0.90697 1.22191 0.89818 1.02721 0.86802 1.48248 1.08764 1.72924 1.07503 1.21438 0.78353 1.00464 1.03262 1.20864 0.88619 0.78840 0.85254 1.91055 1.76936 1.46260 1.21080 0.93035 0.91999 0.91732 0.91031 0.92506 0.92072 0.90173 0.93433 0.94136 0.90806 0.92795 0.92586 0.90957 0.94178 0.93490 0.93312 0.86363 0.87894 0.86671 0.92640 0.94766 0.93027 0.87272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.56 71.99 0.69 -2.04 16 2 C -0.12 -2.78 5.13 30.60 0.16 -2.62 16 3 C -0.09 -2.57 2.32 -10.80 -0.03 -2.59 16 4 C -0.12 -3.24 4.90 30.59 0.15 -3.09 16 5 C -0.16 -4.35 8.60 71.98 0.62 -3.73 16 6 C 0.12 4.52 4.70 86.37 0.41 4.93 16 7 N -0.59 -24.59 2.19 -826.15 -1.81 -26.40 16 8 C 0.22 10.15 2.95 85.63 0.25 10.40 16 9 C -0.48 -27.58 7.37 25.60 0.19 -27.39 16 10 H 0.01 0.83 8.06 -2.91 -0.02 0.80 16 11 C 0.04 2.63 4.54 84.66 0.38 3.01 16 12 N -0.95 -61.31 13.96 21.45 0.30 -61.02 16 13 Si 0.93 46.00 26.54 68.60 1.82 47.82 16 14 H -0.28 -13.82 7.11 99.48 0.71 -13.12 16 15 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 16 H -0.24 -10.55 6.67 99.48 0.66 -9.89 16 17 C 0.53 20.98 7.04 87.66 0.62 21.60 16 18 O -0.57 -23.89 15.11 -3.04 -0.05 -23.93 16 19 C -0.15 -5.00 2.40 -11.54 -0.03 -5.03 16 20 H 0.13 4.07 7.53 -2.39 -0.02 4.05 16 21 C -0.10 -2.49 6.49 31.65 0.21 -2.28 16 22 C 0.11 2.63 7.35 86.83 0.64 3.27 16 23 N -0.64 -21.47 3.34 -842.42 -2.81 -24.28 16 24 C 0.11 3.26 10.97 127.77 1.40 4.66 16 25 C 0.48 19.72 6.89 87.85 0.61 20.32 16 26 O -0.48 -24.64 10.35 -3.05 -0.03 -24.67 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.10 6.95 -2.39 -0.02 1.08 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.65 6.14 -2.39 -0.01 1.64 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 1.84 6.90 -2.39 -0.02 1.83 16 34 H 0.05 1.51 5.83 -2.39 -0.01 1.50 16 35 H 0.04 1.36 5.85 -2.39 -0.01 1.35 16 36 H 0.07 1.71 6.54 -2.39 -0.02 1.70 16 37 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 38 H 0.06 2.21 7.49 -2.39 -0.02 2.20 16 39 H 0.07 2.88 6.09 -2.38 -0.01 2.87 16 40 H 0.04 1.81 4.74 -2.39 -0.01 1.80 16 41 H 0.05 2.19 3.94 -2.39 -0.01 2.18 16 42 H 0.26 15.79 8.31 -92.70 -0.77 15.02 16 43 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.10 2.50 6.98 -2.39 -0.02 2.49 16 45 H 0.12 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 48 H 0.05 1.79 7.94 -2.39 -0.02 1.78 16 49 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -76.72 364.30 4.57 -72.15 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.89 Total: 20.93 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: 6.26 Total: 19.41 kcal Atomic # 7 Polarization: -107.37 SS G_CDS: -4.33 Total: -111.70 kcal Atomic # 8 Polarization: -48.53 SS G_CDS: -0.08 Total: -48.61 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.82 Total: 47.82 kcal Total: -76.72 4.57 -72.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614267327.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.690 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds