Wall clock time and date at job start Fri Apr 10 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 C 1.53008 * 109.47269 * 295.38746 * 3 2 1 5 5 C 1.53006 * 109.47452 * 175.38838 * 3 2 1 6 6 N 1.46502 * 109.47200 * 55.38680 * 3 2 1 7 7 C 1.46506 * 119.99892 * 238.69570 * 6 3 2 8 8 C 1.50698 * 109.47272 * 270.00040 * 7 6 3 9 9 H 1.08001 * 120.00046 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00174 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99803 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00252 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46904 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47184 * 120.00083 * 12 10 8 15 15 H 1.48497 * 109.47226 * 240.00223 * 12 10 8 16 16 C 1.34770 * 120.00057 * 58.69504 * 6 3 2 17 17 O 1.21289 * 119.99858 * 5.34727 * 16 6 3 18 18 C 1.50696 * 120.00303 * 185.34041 * 16 6 3 19 19 C 1.53003 * 109.47251 * 175.54478 * 18 16 6 20 20 N 1.46503 * 109.47162 * 180.02562 * 19 18 16 21 21 C 1.46758 * 124.34875 * 89.99705 * 20 19 18 22 22 C 1.54478 * 105.55094 * 197.07859 * 21 20 19 23 23 C 1.54626 * 101.76545 * 334.54426 * 22 21 20 24 24 C 1.34620 * 124.46670 * 270.02872 * 20 19 18 25 25 O 1.21278 * 124.91342 * 359.55256 * 24 20 19 26 26 H 1.08996 * 109.47295 * 59.99761 * 1 2 3 27 27 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46955 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.46955 * 240.00257 * 2 1 3 30 30 H 1.08996 * 109.47295 * 120.00239 * 2 1 3 31 31 H 1.08996 * 109.47131 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46759 * 300.00286 * 4 3 2 33 33 H 1.09002 * 109.46660 * 59.99920 * 4 3 2 34 34 H 1.08994 * 109.46547 * 298.04662 * 5 3 2 35 35 H 1.08996 * 109.46578 * 58.04619 * 5 3 2 36 36 H 1.08991 * 109.47052 * 178.04596 * 5 3 2 37 37 H 1.09000 * 109.47114 * 30.00319 * 7 6 3 38 38 H 1.09004 * 109.46829 * 150.00237 * 7 6 3 39 39 H 0.97003 * 119.99747 * 179.97438 * 11 10 8 40 40 H 1.09008 * 109.47064 * 55.54798 * 18 16 6 41 41 H 1.09000 * 109.47345 * 295.54471 * 18 16 6 42 42 H 1.09001 * 109.46806 * 60.00544 * 19 18 16 43 43 H 1.08997 * 109.47437 * 300.00190 * 19 18 16 44 44 H 1.08999 * 110.24463 * 78.03786 * 21 20 19 45 45 H 1.08995 * 110.25023 * 316.12421 * 21 20 19 46 46 H 1.08997 * 110.97092 * 92.66468 * 22 21 20 47 47 H 1.09003 * 110.97313 * 216.42851 * 22 21 20 48 48 H 1.09001 * 110.49165 * 143.47499 * 23 22 21 49 49 H 1.09008 * 110.48893 * 266.11897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6269 2.1295 -1.3033 5 6 3.5657 1.4441 0.1160 6 7 1.4631 2.1644 1.1368 7 6 0.6583 3.3672 0.9085 8 6 1.5534 4.5795 0.9165 9 1 2.6155 4.4656 1.0761 10 6 1.0164 5.8343 0.7211 11 7 -0.2770 5.9731 0.5272 12 14 2.1258 7.3371 0.7317 13 1 3.5294 6.9144 0.9689 14 1 2.0317 8.0311 -0.5778 15 1 1.6980 8.2605 1.8132 16 6 1.6726 1.7222 2.3924 17 8 2.4171 0.7850 2.5890 18 6 0.9822 2.3921 3.5524 19 6 1.3009 1.6339 4.8426 20 7 0.6292 2.2849 5.9701 21 6 -0.7221 1.9499 6.4344 22 6 -1.1657 3.1412 7.3120 23 6 0.1932 3.7096 7.7823 24 6 1.1697 3.2676 6.7146 25 8 2.2785 3.7315 6.5525 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9899 3.1573 -1.3030 32 1 2.0561 1.5923 -2.1490 33 1 0.5400 2.1284 -1.3858 34 1 3.8586 0.9858 1.0605 35 1 3.9934 0.8774 -0.7110 36 1 3.9316 2.4702 0.0811 37 1 0.1576 3.2916 -0.0568 38 1 -0.0872 3.4608 1.6982 39 1 -0.6549 6.8559 0.3901 40 1 -0.0950 2.3883 3.3854 41 1 1.3328 3.4205 3.6392 42 1 2.3781 1.6378 5.0096 43 1 0.9504 0.6055 4.7558 44 1 -0.7019 1.0336 7.0245 45 1 -1.3954 1.8359 5.5849 46 1 -1.7135 3.8769 6.7232 47 1 -1.7606 2.8011 8.1597 48 1 0.1537 4.7976 7.8363 49 1 0.4689 3.2885 8.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000615925424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:30 Heat of formation + Delta-G solvation = -80.302133 kcal Electronic energy + Delta-G solvation = -27809.324237 eV Core-core repulsion = 24157.099628 eV Total energy + Delta-G solvation = -3652.224609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.27688 -39.62963 -36.54378 -36.17554 -33.89566 -33.26153 -31.96766 -30.16693 -29.25332 -27.70240 -27.52752 -26.22333 -24.18841 -23.15904 -22.42037 -21.88257 -20.18591 -19.09185 -17.63455 -16.73006 -16.60702 -16.45249 -15.61255 -15.46698 -15.26572 -14.71802 -14.35911 -14.16662 -13.87212 -13.68011 -13.44463 -13.22458 -12.82615 -12.69751 -12.52060 -12.39017 -12.31321 -11.87629 -11.76261 -11.65031 -11.53822 -11.41111 -11.14941 -11.11752 -11.06414 -10.99045 -10.72184 -10.63602 -10.51792 -10.28355 -10.20072 -9.96232 -9.62091 -9.59267 -8.87130 -8.53472 -8.46369 -7.61206 -6.15959 -4.21663 2.73541 3.11144 3.24165 3.32986 3.37486 3.46677 3.98575 4.37155 4.37395 4.43314 4.74603 5.01638 5.16825 5.23693 5.31362 5.36070 5.41146 5.44912 5.51993 5.54030 5.61999 5.67444 5.74518 5.79997 5.89679 5.91280 6.01714 6.06880 6.20479 6.23706 6.25144 6.30724 6.43232 6.50376 6.50632 6.62899 6.67611 6.74017 6.89787 6.95169 7.01856 7.25520 7.28312 7.65104 7.80817 8.10304 8.33618 8.42455 8.84433 9.07886 9.46149 10.90377 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005701 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.544641 B = 4910.095791 C = 6673.966985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.180 3.820 4 C -0.150 4.150 5 C -0.160 4.160 6 N -0.582 5.582 7 C 0.233 3.767 8 C -0.530 4.530 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.891 3.109 13 H -0.272 1.272 14 H -0.283 1.283 15 H -0.283 1.283 16 C 0.524 3.476 17 O -0.574 6.574 18 C -0.151 4.151 19 C 0.145 3.855 20 N -0.619 5.619 21 C 0.101 3.899 22 C -0.132 4.132 23 C -0.155 4.155 24 C 0.513 3.487 25 O -0.528 6.528 26 H 0.053 0.947 27 H 0.043 0.957 28 H 0.053 0.947 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.048 0.952 36 H 0.056 0.944 37 H 0.044 0.956 38 H 0.034 0.966 39 H 0.263 0.737 40 H 0.087 0.913 41 H 0.104 0.896 42 H 0.088 0.912 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.686 -9.087 7.482 12.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C 0.095 3.905 4 C -0.207 4.207 5 C -0.218 4.218 6 N -0.313 5.313 7 C 0.113 3.887 8 C -0.568 4.568 9 H 0.078 0.922 10 C -0.137 4.137 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.196 1.196 14 H -0.209 1.209 15 H -0.209 1.209 16 C 0.312 3.688 17 O -0.456 6.456 18 C -0.192 4.192 19 C 0.023 3.977 20 N -0.354 5.354 21 C -0.023 4.023 22 C -0.170 4.170 23 C -0.195 4.195 24 C 0.301 3.699 25 O -0.404 6.404 26 H 0.072 0.928 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.105 0.895 41 H 0.122 0.878 42 H 0.106 0.894 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.106 0.894 48 H 0.119 0.881 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -3.831 -9.206 7.364 12.396 hybrid contribution 0.318 1.163 -0.175 1.219 sum -3.512 -8.043 7.189 11.345 Atomic orbital electron populations 1.21718 0.96132 1.00278 1.02060 1.21910 0.95964 0.96739 1.02421 1.20171 0.92938 0.90745 0.86605 1.22127 1.01757 1.02160 0.94703 1.22199 0.95068 1.02029 1.02491 1.48292 1.50921 1.27909 1.04161 1.19509 0.90568 0.80307 0.98337 1.21524 0.94702 0.90975 1.49625 0.92155 1.24904 0.95018 0.98920 0.94871 1.69929 1.10755 1.23644 1.48771 0.86529 0.81134 0.82785 0.77635 1.19641 1.20914 1.20880 1.20146 0.81447 0.83004 0.84184 1.90532 1.38956 1.30816 1.85292 1.21955 1.01841 1.02539 0.92877 1.21112 0.98375 0.95151 0.83030 1.48391 1.17044 1.38009 1.31927 1.22065 0.83645 0.97887 0.98663 1.22599 0.96627 0.97741 1.00054 1.22325 0.94808 1.03546 0.98843 1.20972 0.87191 0.79053 0.82730 1.90746 1.20536 1.57648 1.71469 0.92793 0.93777 0.92794 0.92243 0.90348 0.90219 0.93033 0.92004 0.90630 0.93282 0.92508 0.93832 0.94858 0.92731 0.89483 0.87761 0.89401 0.90165 0.91242 0.90239 0.89736 0.89365 0.88118 0.88136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.45 37.16 0.35 -1.85 16 2 C -0.13 -2.14 4.67 -26.73 -0.12 -2.27 16 3 C 0.18 3.30 0.73 -131.81 -0.10 3.20 16 4 C -0.15 -2.65 6.97 37.16 0.26 -2.39 16 5 C -0.16 -2.93 8.45 37.16 0.31 -2.62 16 6 N -0.58 -11.85 1.50 -160.17 -0.24 -12.09 16 7 C 0.23 5.35 4.41 -5.19 -0.02 5.33 16 8 C -0.53 -13.71 8.66 -34.44 -0.30 -14.01 16 9 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 10 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.37 13.29 55.43 0.74 -23.63 16 12 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 13 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 15 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 16 C 0.52 10.57 6.81 -10.99 -0.07 10.49 16 17 O -0.57 -12.08 12.25 5.55 0.07 -12.01 16 18 C -0.15 -2.77 4.56 -27.88 -0.13 -2.90 16 19 C 0.15 2.33 5.24 -4.04 -0.02 2.31 16 20 N -0.62 -8.74 2.94 -172.36 -0.51 -9.25 16 21 C 0.10 0.97 7.34 -3.13 -0.02 0.95 16 22 C -0.13 -1.07 7.18 -25.10 -0.18 -1.25 16 23 C -0.15 -1.61 6.86 -26.74 -0.18 -1.80 16 24 C 0.51 8.08 8.03 -10.77 -0.09 7.99 16 25 O -0.53 -10.89 17.60 5.56 0.10 -10.79 16 26 H 0.05 0.80 6.55 -51.93 -0.34 0.46 16 27 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.89 7.26 -51.93 -0.38 0.51 16 29 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.39 6.40 -51.93 -0.33 1.06 16 31 H 0.08 1.61 7.12 -51.93 -0.37 1.24 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 1.09 5.35 -51.93 -0.28 0.82 16 34 H 0.07 1.50 6.04 -51.93 -0.31 1.19 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 37 H 0.04 1.04 5.75 -51.93 -0.30 0.74 16 38 H 0.03 0.80 6.32 -51.93 -0.33 0.47 16 39 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 40 H 0.09 1.49 7.36 -51.92 -0.38 1.11 16 41 H 0.10 2.24 8.14 -51.93 -0.42 1.81 16 42 H 0.09 1.61 7.84 -51.93 -0.41 1.20 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.10 0.85 8.14 -51.92 -0.42 0.42 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -30.88 381.21 -8.00 -38.88 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -8.47 Total: 4.21 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.41 Total: 2.83 kcal Atomic # 7 Polarization: -44.96 SS G_CDS: -0.01 Total: -44.97 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: 0.17 Total: -22.80 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -30.88 -8.00 -38.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615925424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.426 kcal (2) G-P(sol) polarization free energy of solvation -30.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds