Wall clock time and date at job start Fri Apr 10 2020 22:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47170 * 2 1 4 4 C 1.53008 * 109.47269 * 295.38746 * 3 2 1 5 5 C 1.53006 * 109.47452 * 175.38838 * 3 2 1 6 6 N 1.46502 * 109.47200 * 55.38680 * 3 2 1 7 7 C 1.46506 * 119.99892 * 238.69570 * 6 3 2 8 8 C 1.50698 * 109.47272 * 270.00040 * 7 6 3 9 9 H 1.08001 * 120.00046 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00174 * 180.02562 * 8 7 6 11 11 N 1.31521 * 119.99803 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00252 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.46904 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.47184 * 120.00083 * 12 10 8 15 15 H 1.48497 * 109.47226 * 240.00223 * 12 10 8 16 16 C 1.34770 * 120.00057 * 58.69504 * 6 3 2 17 17 O 1.21289 * 119.99858 * 5.34727 * 16 6 3 18 18 C 1.50696 * 120.00303 * 185.34041 * 16 6 3 19 19 C 1.53003 * 109.47251 * 175.54478 * 18 16 6 20 20 N 1.46503 * 109.47162 * 180.02562 * 19 18 16 21 21 C 1.46758 * 124.34875 * 89.99705 * 20 19 18 22 22 C 1.54478 * 105.55094 * 197.07859 * 21 20 19 23 23 C 1.54626 * 101.76545 * 334.54426 * 22 21 20 24 24 C 1.34620 * 124.46670 * 270.02872 * 20 19 18 25 25 O 1.21278 * 124.91342 * 359.55256 * 24 20 19 26 26 H 1.08996 * 109.47295 * 59.99761 * 1 2 3 27 27 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46955 * 299.99743 * 1 2 3 29 29 H 1.09000 * 109.46955 * 240.00257 * 2 1 3 30 30 H 1.08996 * 109.47295 * 120.00239 * 2 1 3 31 31 H 1.08996 * 109.47131 * 179.97438 * 4 3 2 32 32 H 1.09000 * 109.46759 * 300.00286 * 4 3 2 33 33 H 1.09002 * 109.46660 * 59.99920 * 4 3 2 34 34 H 1.08994 * 109.46547 * 298.04662 * 5 3 2 35 35 H 1.08996 * 109.46578 * 58.04619 * 5 3 2 36 36 H 1.08991 * 109.47052 * 178.04596 * 5 3 2 37 37 H 1.09000 * 109.47114 * 30.00319 * 7 6 3 38 38 H 1.09004 * 109.46829 * 150.00237 * 7 6 3 39 39 H 0.97003 * 119.99747 * 179.97438 * 11 10 8 40 40 H 1.09008 * 109.47064 * 55.54798 * 18 16 6 41 41 H 1.09000 * 109.47345 * 295.54471 * 18 16 6 42 42 H 1.09001 * 109.46806 * 60.00544 * 19 18 16 43 43 H 1.08997 * 109.47437 * 300.00190 * 19 18 16 44 44 H 1.08999 * 110.24463 * 78.03786 * 21 20 19 45 45 H 1.08995 * 110.25023 * 316.12421 * 21 20 19 46 46 H 1.08997 * 110.97092 * 92.66468 * 22 21 20 47 47 H 1.09003 * 110.97313 * 216.42851 * 22 21 20 48 48 H 1.09001 * 110.49165 * 143.47499 * 23 22 21 49 49 H 1.09008 * 110.48893 * 266.11897 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.6269 2.1295 -1.3033 5 6 3.5657 1.4441 0.1160 6 7 1.4631 2.1644 1.1368 7 6 0.6583 3.3672 0.9085 8 6 1.5534 4.5795 0.9165 9 1 2.6155 4.4656 1.0761 10 6 1.0164 5.8343 0.7211 11 7 -0.2770 5.9731 0.5272 12 14 2.1258 7.3371 0.7317 13 1 3.5294 6.9144 0.9689 14 1 2.0317 8.0311 -0.5778 15 1 1.6980 8.2605 1.8132 16 6 1.6726 1.7222 2.3924 17 8 2.4171 0.7850 2.5890 18 6 0.9822 2.3921 3.5524 19 6 1.3009 1.6339 4.8426 20 7 0.6292 2.2849 5.9701 21 6 -0.7221 1.9499 6.4344 22 6 -1.1657 3.1412 7.3120 23 6 0.1932 3.7096 7.7823 24 6 1.1697 3.2676 6.7146 25 8 2.2785 3.7315 6.5525 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 1.9899 3.1573 -1.3030 32 1 2.0561 1.5923 -2.1490 33 1 0.5400 2.1284 -1.3858 34 1 3.8586 0.9858 1.0605 35 1 3.9934 0.8774 -0.7110 36 1 3.9316 2.4702 0.0811 37 1 0.1576 3.2916 -0.0568 38 1 -0.0872 3.4608 1.6982 39 1 -0.6549 6.8559 0.3901 40 1 -0.0950 2.3883 3.3854 41 1 1.3328 3.4205 3.6392 42 1 2.3781 1.6378 5.0096 43 1 0.9504 0.6055 4.7558 44 1 -0.7019 1.0336 7.0245 45 1 -1.3954 1.8359 5.5849 46 1 -1.7135 3.8769 6.7232 47 1 -1.7606 2.8011 8.1597 48 1 0.1537 4.7976 7.8363 49 1 0.4689 3.2885 8.7493 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000615925424.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:30 Heat of formation + Delta-G solvation = -97.507197 kcal Electronic energy + Delta-G solvation = -27810.070305 eV Core-core repulsion = 24157.099628 eV Total energy + Delta-G solvation = -3652.970677 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.56325 -41.06622 -38.06792 -37.44001 -35.61940 -34.60838 -33.72911 -31.48114 -30.55856 -29.45847 -28.43675 -27.91053 -25.53263 -24.83879 -23.98786 -22.71063 -21.64810 -20.30873 -19.23547 -18.65314 -18.03287 -17.49681 -17.14573 -16.90587 -16.68894 -16.33381 -16.03283 -15.58580 -15.16668 -14.79740 -14.70783 -14.39355 -14.33017 -14.11811 -13.98375 -13.89727 -13.51537 -13.36522 -13.24136 -13.05904 -12.92074 -12.82720 -12.79748 -12.60007 -12.34050 -12.30571 -12.22439 -12.12190 -12.00697 -11.80852 -11.72963 -11.55765 -11.37992 -10.86625 -10.64510 -10.34896 -9.71782 -9.33595 -8.21628 -6.32945 1.32086 1.36699 1.45927 1.52547 1.78708 1.97554 2.33865 2.49136 3.07860 3.44538 3.66133 3.73875 3.96266 4.01082 4.03047 4.09813 4.10832 4.21726 4.27782 4.44224 4.45508 4.65919 4.68123 4.70181 4.72564 4.78164 4.81241 4.83418 4.90108 4.94142 4.96475 5.03353 5.08658 5.10985 5.15313 5.25088 5.26044 5.26924 5.38612 5.48328 5.56965 5.58091 5.69099 6.00738 6.09873 6.17268 6.61568 6.86859 7.13515 7.32975 7.45541 8.82912 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009732 B = 0.005701 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2876.544641 B = 4910.095791 C = 6673.966985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.123 4.123 3 C 0.168 3.832 4 C -0.142 4.142 5 C -0.153 4.153 6 N -0.584 5.584 7 C 0.252 3.748 8 C -0.535 4.535 9 H 0.039 0.961 10 C 0.028 3.972 11 N -0.913 5.913 12 Si 0.941 3.059 13 H -0.281 1.281 14 H -0.272 1.272 15 H -0.281 1.281 16 C 0.518 3.482 17 O -0.581 6.581 18 C -0.140 4.140 19 C 0.155 3.845 20 N -0.621 5.621 21 C 0.092 3.908 22 C -0.119 4.119 23 C -0.146 4.146 24 C 0.493 3.507 25 O -0.593 6.593 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.034 0.966 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.038 0.962 38 H 0.023 0.977 39 H 0.267 0.733 40 H 0.100 0.900 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.080 0.920 47 H 0.128 0.872 48 H 0.102 0.898 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.354 -10.416 7.738 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.162 4.162 3 C 0.084 3.916 4 C -0.199 4.199 5 C -0.211 4.211 6 N -0.314 5.314 7 C 0.131 3.869 8 C -0.574 4.574 9 H 0.057 0.943 10 C -0.173 4.173 11 N -0.553 5.553 12 Si 0.767 3.233 13 H -0.206 1.206 14 H -0.197 1.197 15 H -0.207 1.207 16 C 0.307 3.693 17 O -0.464 6.464 18 C -0.181 4.181 19 C 0.032 3.968 20 N -0.354 5.354 21 C -0.029 4.029 22 C -0.157 4.157 23 C -0.186 4.186 24 C 0.283 3.717 25 O -0.474 6.474 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.076 0.924 40 H 0.118 0.882 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.116 0.884 45 H 0.105 0.895 46 H 0.099 0.901 47 H 0.147 0.853 48 H 0.120 0.880 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -5.542 -10.561 7.621 14.154 hybrid contribution 0.864 1.525 -0.273 1.773 sum -4.678 -9.036 7.348 12.551 Atomic orbital electron populations 1.21681 0.95230 1.01579 1.01284 1.21831 0.96682 0.94733 1.02909 1.20492 0.92826 0.92161 0.86119 1.22038 1.01707 1.00654 0.95497 1.22129 0.95385 1.00809 1.02790 1.48284 1.50735 1.27287 1.05074 1.19108 0.89963 0.80425 0.97413 1.21628 0.94001 0.92433 1.49308 0.94259 1.25453 0.96075 1.00937 0.94809 1.69978 1.11567 1.24308 1.49416 0.85772 0.79163 0.80323 0.78035 1.20602 1.19677 1.20657 1.20424 0.81368 0.82989 0.84521 1.90522 1.39195 1.31283 1.85422 1.21842 1.02169 1.00417 0.93638 1.20871 0.97092 0.96080 0.82785 1.48592 1.18751 1.37272 1.30743 1.22458 0.81009 0.99826 0.99657 1.22661 0.95416 0.96694 1.00924 1.22372 0.94417 1.03844 0.97932 1.22084 0.87170 0.78688 0.83790 1.90697 1.23543 1.59719 1.73477 0.92409 0.91434 0.94705 0.89569 0.91925 0.93306 0.89804 0.92128 0.92469 0.90134 0.94844 0.94366 0.95954 0.92410 0.88218 0.91495 0.92471 0.87911 0.88432 0.89507 0.90081 0.85348 0.87970 0.85532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.45 71.98 0.68 -3.30 16 2 C -0.12 -3.77 4.67 30.59 0.14 -3.63 16 3 C 0.17 6.08 0.73 3.61 0.00 6.08 16 4 C -0.14 -4.87 6.97 71.98 0.50 -4.37 16 5 C -0.15 -5.60 8.45 71.98 0.61 -5.00 16 6 N -0.58 -24.25 1.50 -779.04 -1.17 -25.42 16 7 C 0.25 11.89 4.41 85.63 0.38 12.27 16 8 C -0.53 -28.62 8.66 25.60 0.22 -28.40 16 9 H 0.04 2.23 7.81 -2.91 -0.02 2.21 16 10 C 0.03 1.50 5.46 84.65 0.46 1.96 16 11 N -0.91 -50.25 13.29 21.45 0.28 -49.96 16 12 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 13 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 14 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 15 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 16 C 0.52 21.51 6.81 87.66 0.60 22.11 16 17 O -0.58 -24.97 12.25 -3.06 -0.04 -25.01 16 18 C -0.14 -5.33 4.56 29.85 0.14 -5.19 16 19 C 0.15 5.09 5.24 86.38 0.45 5.54 16 20 N -0.62 -17.39 2.94 -817.70 -2.40 -19.79 16 21 C 0.09 1.53 7.34 86.83 0.64 2.17 16 22 C -0.12 -1.54 7.18 31.65 0.23 -1.31 16 23 C -0.15 -2.77 6.86 30.59 0.21 -2.57 16 24 C 0.49 15.81 8.03 87.87 0.71 16.52 16 25 O -0.59 -26.00 17.60 -3.02 -0.05 -26.06 16 26 H 0.06 1.59 6.55 -2.39 -0.02 1.57 16 27 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.03 1.10 7.26 -2.39 -0.02 1.09 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.06 2.14 6.40 -2.39 -0.02 2.12 16 31 H 0.05 1.97 7.12 -2.39 -0.02 1.96 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.29 16 33 H 0.06 2.08 5.35 -2.39 -0.01 2.07 16 34 H 0.06 2.29 6.04 -2.39 -0.01 2.28 16 35 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.04 1.86 5.75 -2.39 -0.01 1.84 16 38 H 0.02 1.11 6.32 -2.39 -0.02 1.09 16 39 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 40 H 0.10 3.48 7.36 -2.38 -0.02 3.46 16 41 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.06 2.22 7.84 -2.39 -0.02 2.21 16 43 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 44 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 48 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 49 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -70.68 381.21 5.53 -65.15 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.92 Total: 22.15 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.96 Total: 12.87 kcal Atomic # 7 Polarization: -91.88 SS G_CDS: -3.29 Total: -95.17 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -0.09 Total: -51.07 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -70.68 5.53 -65.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000615925424.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.354 kcal (2) G-P(sol) polarization free energy of solvation -70.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds