Wall clock time and date at job start Fri Apr 10 2020 22:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47052 * 2 1 4 4 C 1.53000 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47365 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47447 * 179.97438 * 6 5 4 8 8 C 1.52998 * 110.53376 * 66.37353 * 7 6 5 9 9 N 1.47314 * 110.59818 * 303.54479 * 7 6 5 10 10 C 1.34522 * 106.62026 * 241.47286 * 9 7 6 11 11 O 1.21539 * 123.77037 * 180.02562 * 10 9 7 12 12 N 1.33794 * 112.46020 * 359.97438 * 10 9 7 13 13 C 1.46496 * 124.17991 * 179.72985 * 12 10 9 14 14 C 1.53004 * 109.46902 * 90.02736 * 13 12 10 15 15 C 1.53000 * 109.47062 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47127 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99972 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00120 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46869 * 90.00360 * 20 18 16 22 22 H 1.48504 * 109.46825 * 209.99823 * 20 18 16 23 23 H 1.48492 * 109.47387 * 330.00014 * 20 18 16 24 24 C 1.34774 * 111.64167 * 0.02562 * 12 10 9 25 25 O 1.21236 * 127.15396 * 179.97438 * 24 12 10 26 26 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 299.99701 * 1 2 3 28 28 H 1.08996 * 109.46729 * 60.00410 * 1 2 3 29 29 H 1.09001 * 109.47452 * 240.00039 * 2 1 3 30 30 H 1.08997 * 109.47468 * 119.99638 * 2 1 3 31 31 H 1.09001 * 109.46960 * 59.99738 * 3 2 1 32 32 H 1.08997 * 109.46688 * 300.00116 * 3 2 1 33 33 H 1.08988 * 109.47472 * 59.99893 * 4 3 2 34 34 H 1.09003 * 109.47070 * 299.99629 * 4 3 2 35 35 H 1.09001 * 109.47268 * 59.99625 * 5 4 3 36 36 H 1.09003 * 109.46695 * 299.99557 * 5 4 3 37 37 H 1.09001 * 109.47195 * 59.99628 * 6 5 4 38 38 H 1.09003 * 109.46861 * 300.00041 * 6 5 4 39 39 H 1.08991 * 109.47469 * 297.87374 * 8 7 6 40 40 H 1.09001 * 109.46970 * 57.87394 * 8 7 6 41 41 H 1.09009 * 109.46988 * 177.87235 * 8 7 6 42 42 H 0.97002 * 126.68950 * 61.43843 * 9 7 6 43 43 H 1.09001 * 109.47021 * 210.02775 * 13 12 10 44 44 H 1.09002 * 109.47306 * 330.03011 * 13 12 10 45 45 H 1.08996 * 109.46874 * 299.99702 * 14 13 12 46 46 H 1.09002 * 109.46915 * 60.00035 * 14 13 12 47 47 H 1.09001 * 109.46933 * 300.00083 * 15 14 13 48 48 H 1.09007 * 109.47144 * 59.99738 * 15 14 13 49 49 H 0.96997 * 119.99736 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1199 4.3277 0.0000 8 6 5.7574 5.0251 1.3127 9 7 5.5742 5.0703 -1.1493 10 6 6.6265 5.4531 -1.8948 11 8 6.5285 6.0914 -2.9244 12 7 7.7931 5.0535 -1.3756 13 6 9.0993 5.3256 -1.9804 14 6 9.6436 6.6510 -1.4437 15 6 11.0076 6.9355 -2.0758 16 6 11.5440 8.2406 -1.5467 17 1 10.9694 8.8104 -0.8314 18 6 12.7680 8.7079 -1.9765 19 7 13.2359 9.8471 -1.5151 20 14 13.7615 7.7227 -3.2141 21 1 13.3961 8.1444 -4.5903 22 1 15.2097 7.9639 -2.9906 23 1 13.4687 6.2767 -3.0454 24 6 7.6176 4.3642 -0.2308 25 8 8.4785 3.8750 0.4686 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8907 34 1 3.9337 0.9287 0.8892 35 1 3.7170 3.3985 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.9733 2.3718 -0.8902 38 1 5.9732 2.3710 0.8898 39 1 4.6730 5.0664 1.4148 40 1 6.1800 4.4680 2.1488 41 1 6.1609 6.0377 1.3097 42 1 4.6385 5.2482 -1.3330 43 1 9.7904 4.5208 -1.7298 44 1 8.9923 5.3887 -3.0633 45 1 8.9525 7.4557 -1.6943 46 1 9.7506 6.5879 -0.3608 47 1 11.6990 6.1308 -1.8256 48 1 10.9002 6.9987 -3.1587 49 1 14.0971 10.1755 -1.8173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727410737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:33 Heat of formation + Delta-G solvation = -87.598196 kcal Electronic energy + Delta-G solvation = -25863.504410 eV Core-core repulsion = 22210.963419 eV Total energy + Delta-G solvation = -3652.540990 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.56843 -38.58029 -37.70597 -36.30698 -35.76742 -34.08156 -33.07669 -31.61341 -30.95901 -28.58238 -27.77891 -25.68626 -24.10669 -23.53108 -22.22404 -21.47390 -20.76181 -20.47766 -20.02261 -17.95670 -16.80824 -16.69836 -16.43048 -16.23025 -15.68440 -15.33411 -15.14430 -14.56791 -14.34213 -14.17517 -14.08327 -14.04033 -13.80678 -13.33874 -13.01519 -12.79841 -12.74352 -12.70356 -12.30323 -12.20694 -11.85367 -11.78449 -11.68299 -11.39656 -11.28048 -11.14579 -11.06164 -10.89940 -10.81149 -10.76361 -10.23533 -10.01793 -9.91450 -9.76812 -9.62270 -9.32289 -9.13673 -8.51645 -6.01995 -4.00305 1.62389 2.26637 3.01717 3.08366 3.33692 3.40550 3.43953 3.79144 4.06650 4.30480 4.43450 4.47470 4.48924 4.59993 4.70236 4.86599 4.99228 5.02673 5.07612 5.18728 5.28286 5.30588 5.32131 5.35183 5.36688 5.39948 5.51051 5.55671 5.59637 5.62749 5.63984 5.65901 5.71993 5.75635 5.82810 5.87730 5.91463 5.95302 6.39541 6.56141 6.68801 6.81754 7.11986 7.25677 7.39856 7.41385 7.79344 8.15832 8.55518 9.02232 9.59776 11.11429 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033477 B = 0.002268 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.191978 B =12343.140917 C =12413.705565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.121 4.121 4 C -0.120 4.120 5 C -0.119 4.119 6 C -0.112 4.112 7 C 0.121 3.879 8 C -0.148 4.148 9 N -0.724 5.724 10 C 0.701 3.299 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.112 3.888 14 C -0.115 4.115 15 C -0.010 4.010 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.066 3.934 19 N -0.903 5.903 20 Si 0.880 3.120 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.265 1.265 24 C 0.527 3.473 25 O -0.463 6.463 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.435 0.565 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.019 0.981 48 H 0.015 0.985 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.150 -19.860 4.943 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.150 4.150 7 C 0.030 3.970 8 C -0.206 4.206 9 N -0.389 5.389 10 C 0.402 3.598 11 O -0.411 6.411 12 N -0.317 5.317 13 C -0.008 4.008 14 C -0.154 4.154 15 C -0.048 4.048 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.135 4.135 19 N -0.542 5.542 20 Si 0.708 3.292 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C 0.313 3.687 25 O -0.331 6.331 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.280 0.720 43 H 0.109 0.891 44 H 0.111 0.889 45 H 0.080 0.920 46 H 0.078 0.922 47 H 0.037 0.963 48 H 0.034 0.966 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -24.438 -19.644 4.712 31.707 hybrid contribution 0.238 -0.211 -0.745 0.811 sum -24.200 -19.856 3.966 31.553 Atomic orbital electron populations 1.21782 0.95949 1.01576 1.01804 1.21546 0.95831 0.97002 1.02022 1.21627 0.95277 0.96780 1.02124 1.21596 0.95427 0.96353 1.02394 1.21611 0.93845 0.97598 1.02575 1.21794 0.96788 0.92272 1.04194 1.21481 0.91193 0.94963 0.89387 1.22014 1.03128 1.01416 0.94015 1.45683 1.08592 1.59205 1.25439 1.15928 0.80947 0.79541 0.83374 1.91024 1.84974 1.41966 1.23179 1.46583 1.09308 1.51118 1.24664 1.22097 0.79169 1.00555 0.98940 1.21821 0.99286 0.93701 1.00583 1.19505 0.91592 0.97793 0.95874 1.21078 1.03972 1.04367 1.26364 0.91066 1.25027 0.97428 0.94814 0.96215 1.69915 1.19724 1.20218 1.44343 0.86765 0.79253 0.81282 0.81926 1.20229 1.21364 1.18939 1.20730 0.90700 0.76961 0.80286 1.90797 1.49317 1.44398 1.48634 0.92857 0.92773 0.92763 0.92082 0.92057 0.91950 0.91991 0.91878 0.91710 0.91110 0.91666 0.90888 0.89240 0.90287 0.89802 0.91141 0.72028 0.89105 0.88884 0.91985 0.92248 0.96277 0.96624 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.13 -0.61 5.93 -26.73 -0.16 -0.77 16 3 C -0.12 -0.57 5.21 -26.73 -0.14 -0.71 16 4 C -0.12 -0.60 5.22 -26.73 -0.14 -0.74 16 5 C -0.12 -0.60 4.80 -26.73 -0.13 -0.73 16 6 C -0.11 -0.79 4.55 -26.74 -0.12 -0.91 16 7 C 0.12 1.13 1.01 -132.10 -0.13 0.99 16 8 C -0.15 -1.13 8.71 37.16 0.32 -0.81 16 9 N -0.72 -7.16 5.41 -52.94 -0.29 -7.45 16 10 C 0.70 10.34 8.62 -88.02 -0.76 9.58 16 11 O -0.54 -9.90 17.48 5.33 0.09 -9.81 16 12 N -0.57 -8.75 2.60 -120.73 -0.31 -9.06 16 13 C 0.11 1.92 5.70 -4.04 -0.02 1.90 16 14 C -0.12 -2.41 5.48 -26.73 -0.15 -2.55 16 15 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 16 C -0.52 -15.25 9.66 -34.44 -0.33 -15.59 16 17 H 0.07 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 19 N -0.90 -28.38 13.96 55.43 0.77 -27.61 16 20 Si 0.88 22.10 27.47 -169.99 -4.67 17.43 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 24 C 0.53 7.29 6.99 -10.55 -0.07 7.22 16 25 O -0.46 -7.56 17.76 5.60 0.10 -7.46 16 26 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.34 8.14 -51.94 -0.42 -0.08 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.30 6.75 -51.93 -0.35 -0.05 16 36 H 0.06 0.32 7.04 -51.93 -0.37 -0.04 16 37 H 0.07 0.57 8.13 -51.93 -0.42 0.15 16 38 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.41 6.81 -51.93 -0.35 0.05 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 42 H 0.44 3.16 8.12 -40.82 -0.33 2.83 16 43 H 0.09 1.48 8.00 -51.93 -0.42 1.06 16 44 H 0.09 1.56 7.86 -51.93 -0.41 1.15 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 47 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 48 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 49 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 LS Contribution 394.51 15.07 5.95 5.95 Total: -1.00 -34.56 394.51 -8.95 -43.51 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -8.92 Total: -3.57 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -1.67 Total: -1.92 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: 0.17 Total: -44.12 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: 0.19 Total: -17.27 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.67 Total: 17.43 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.56 -8.95 -43.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727410737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.091 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds