Wall clock time and date at job start Fri Apr 10 2020 22:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47052 * 2 1 4 4 C 1.53000 * 109.47052 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.46929 * 180.02562 * 4 3 2 6 6 C 1.52992 * 109.47365 * 179.97438 * 5 4 3 7 7 C 1.52994 * 109.47447 * 179.97438 * 6 5 4 8 8 C 1.52998 * 110.53376 * 66.37353 * 7 6 5 9 9 N 1.47314 * 110.59818 * 303.54479 * 7 6 5 10 10 C 1.34522 * 106.62026 * 241.47286 * 9 7 6 11 11 O 1.21539 * 123.77037 * 180.02562 * 10 9 7 12 12 N 1.33794 * 112.46020 * 359.97438 * 10 9 7 13 13 C 1.46496 * 124.17991 * 179.72985 * 12 10 9 14 14 C 1.53004 * 109.46902 * 90.02736 * 13 12 10 15 15 C 1.53000 * 109.47062 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.47127 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99905 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99972 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00120 * 179.97438 * 18 16 15 20 20 Si 1.86804 * 119.99800 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46869 * 90.00360 * 20 18 16 22 22 H 1.48504 * 109.46825 * 209.99823 * 20 18 16 23 23 H 1.48492 * 109.47387 * 330.00014 * 20 18 16 24 24 C 1.34774 * 111.64167 * 0.02562 * 12 10 9 25 25 O 1.21236 * 127.15396 * 179.97438 * 24 12 10 26 26 H 1.09000 * 109.46923 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.46991 * 299.99701 * 1 2 3 28 28 H 1.08996 * 109.46729 * 60.00410 * 1 2 3 29 29 H 1.09001 * 109.47452 * 240.00039 * 2 1 3 30 30 H 1.08997 * 109.47468 * 119.99638 * 2 1 3 31 31 H 1.09001 * 109.46960 * 59.99738 * 3 2 1 32 32 H 1.08997 * 109.46688 * 300.00116 * 3 2 1 33 33 H 1.08988 * 109.47472 * 59.99893 * 4 3 2 34 34 H 1.09003 * 109.47070 * 299.99629 * 4 3 2 35 35 H 1.09001 * 109.47268 * 59.99625 * 5 4 3 36 36 H 1.09003 * 109.46695 * 299.99557 * 5 4 3 37 37 H 1.09001 * 109.47195 * 59.99628 * 6 5 4 38 38 H 1.09003 * 109.46861 * 300.00041 * 6 5 4 39 39 H 1.08991 * 109.47469 * 297.87374 * 8 7 6 40 40 H 1.09001 * 109.46970 * 57.87394 * 8 7 6 41 41 H 1.09009 * 109.46988 * 177.87235 * 8 7 6 42 42 H 0.97002 * 126.68950 * 61.43843 * 9 7 6 43 43 H 1.09001 * 109.47021 * 210.02775 * 13 12 10 44 44 H 1.09002 * 109.47306 * 330.03011 * 13 12 10 45 45 H 1.08996 * 109.46874 * 299.99702 * 14 13 12 46 46 H 1.09002 * 109.46915 * 60.00035 * 14 13 12 47 47 H 1.09001 * 109.46933 * 300.00083 * 15 14 13 48 48 H 1.09007 * 109.47144 * 59.99738 * 15 14 13 49 49 H 0.96997 * 119.99736 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0800 2.8851 0.0000 6 6 5.6099 2.8852 0.0000 7 6 6.1199 4.3277 0.0000 8 6 5.7574 5.0251 1.3127 9 7 5.5742 5.0703 -1.1493 10 6 6.6265 5.4531 -1.8948 11 8 6.5285 6.0914 -2.9244 12 7 7.7931 5.0535 -1.3756 13 6 9.0993 5.3256 -1.9804 14 6 9.6436 6.6510 -1.4437 15 6 11.0076 6.9355 -2.0758 16 6 11.5440 8.2406 -1.5467 17 1 10.9694 8.8104 -0.8314 18 6 12.7680 8.7079 -1.9765 19 7 13.2359 9.8471 -1.5151 20 14 13.7615 7.7227 -3.2141 21 1 13.3961 8.1444 -4.5903 22 1 15.2097 7.9639 -2.9906 23 1 13.4687 6.2767 -3.0454 24 6 7.6176 4.3642 -0.2308 25 8 8.4785 3.8750 0.4686 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8907 34 1 3.9337 0.9287 0.8892 35 1 3.7170 3.3985 0.8904 36 1 3.7163 3.3994 -0.8896 37 1 5.9733 2.3718 -0.8902 38 1 5.9732 2.3710 0.8898 39 1 4.6730 5.0664 1.4148 40 1 6.1800 4.4680 2.1488 41 1 6.1609 6.0377 1.3097 42 1 4.6385 5.2482 -1.3330 43 1 9.7904 4.5208 -1.7298 44 1 8.9923 5.3887 -3.0633 45 1 8.9525 7.4557 -1.6943 46 1 9.7506 6.5879 -0.3608 47 1 11.6990 6.1308 -1.8256 48 1 10.9002 6.9987 -3.1587 49 1 14.0971 10.1755 -1.8173 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727410737.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:32 Heat of formation + Delta-G solvation = -109.195400 kcal Electronic energy + Delta-G solvation = -25864.440935 eV Core-core repulsion = 22210.963419 eV Total energy + Delta-G solvation = -3653.477515 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.64901 -39.76527 -38.50605 -37.17815 -36.94252 -35.57403 -34.26238 -33.26848 -31.73199 -29.54402 -29.04832 -26.52639 -25.40766 -24.70421 -23.05914 -22.25586 -21.86355 -21.44034 -21.18663 -19.14763 -18.83671 -17.81357 -17.41857 -16.84874 -16.67836 -16.63367 -16.13620 -15.84850 -15.76117 -15.32793 -15.19619 -14.87616 -14.71460 -14.44098 -14.06760 -13.79692 -13.52970 -13.50107 -13.41899 -13.22413 -13.09972 -12.82438 -12.63693 -12.35863 -12.24019 -12.16611 -11.87208 -11.81838 -11.74154 -11.64263 -11.55432 -11.47272 -11.46067 -11.26324 -10.98814 -10.82078 -10.78708 -10.46200 -8.31539 -6.37029 0.52323 1.15598 1.36280 1.38388 1.50488 1.90725 2.10784 2.35479 2.83907 3.03537 3.41441 3.64337 3.84809 3.98036 4.02454 4.07614 4.19237 4.24444 4.28072 4.34173 4.38744 4.46402 4.54981 4.61007 4.64142 4.72533 4.81414 4.86609 4.87730 4.92802 4.93728 4.96813 5.00655 5.09529 5.15890 5.21856 5.29616 5.32097 5.34720 5.44156 5.45636 5.54936 5.59534 5.60728 5.78673 6.02288 6.23132 6.32902 6.69505 7.07121 7.27266 8.85383 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.033477 B = 0.002268 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.191978 B =12343.140917 C =12413.705565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.128 4.128 3 C -0.118 4.118 4 C -0.118 4.118 5 C -0.114 4.114 6 C -0.106 4.106 7 C 0.132 3.868 8 C -0.147 4.147 9 N -0.697 5.697 10 C 0.698 3.302 11 O -0.580 6.580 12 N -0.580 5.580 13 C 0.120 3.880 14 C -0.103 4.103 15 C -0.007 4.007 16 C -0.538 4.538 17 H 0.026 0.974 18 C 0.003 3.997 19 N -0.951 5.951 20 Si 0.954 3.046 21 H -0.265 1.265 22 H -0.282 1.282 23 H -0.241 1.241 24 C 0.519 3.481 25 O -0.491 6.491 26 H 0.053 0.947 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.056 0.944 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.451 0.549 43 H 0.103 0.897 44 H 0.099 0.901 45 H 0.044 0.956 46 H 0.046 0.954 47 H 0.030 0.970 48 H 0.026 0.974 49 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.535 -22.165 4.705 34.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.156 4.156 4 C -0.156 4.156 5 C -0.151 4.151 6 C -0.144 4.144 7 C 0.042 3.958 8 C -0.204 4.204 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.456 6.456 12 N -0.325 5.325 13 C -0.001 4.001 14 C -0.142 4.142 15 C -0.045 4.045 16 C -0.576 4.576 17 H 0.045 0.955 18 C -0.194 4.194 19 N -0.591 5.591 20 Si 0.777 3.223 21 H -0.190 1.190 22 H -0.208 1.208 23 H -0.164 1.164 24 C 0.308 3.692 25 O -0.361 6.361 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.131 0.869 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.299 0.701 43 H 0.121 0.879 44 H 0.117 0.883 45 H 0.062 0.938 46 H 0.065 0.935 47 H 0.048 0.952 48 H 0.045 0.955 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.894 -21.977 4.511 34.261 hybrid contribution 0.617 0.558 -0.562 1.004 sum -25.277 -21.418 3.949 33.366 Atomic orbital electron populations 1.21789 0.95841 1.01687 1.01870 1.21559 0.95960 0.97203 1.01859 1.21600 0.95038 0.96608 1.02310 1.21562 0.95542 0.96214 1.02247 1.21603 0.91961 0.97939 1.03594 1.21815 0.98261 0.90017 1.04340 1.21620 0.87717 0.96751 0.89731 1.22091 1.05363 1.00151 0.92841 1.45581 1.08390 1.57846 1.24524 1.16062 0.81578 0.79292 0.83227 1.90996 1.85536 1.43974 1.25104 1.46603 1.08943 1.51557 1.25398 1.21806 0.80568 0.98518 0.99189 1.21584 0.97470 0.95509 0.99630 1.19434 0.93307 0.95339 0.96372 1.21427 1.04128 1.06232 1.25826 0.95547 1.26078 0.98737 0.95994 0.98561 1.70075 1.20527 1.22318 1.46197 0.85597 0.77239 0.80591 0.78890 1.19046 1.20764 1.16442 1.21519 0.92662 0.75833 0.79222 1.90777 1.50738 1.45439 1.49182 0.92784 0.92532 0.92857 0.92497 0.92003 0.91409 0.92120 0.92546 0.91438 0.89451 0.91278 0.91644 0.88372 0.86861 0.88969 0.92898 0.70141 0.87904 0.88311 0.93756 0.93514 0.95181 0.95537 0.92392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 71.98 0.71 -0.48 16 2 C -0.13 -1.03 5.93 30.60 0.18 -0.85 16 3 C -0.12 -0.84 5.21 30.60 0.16 -0.68 16 4 C -0.12 -0.86 5.22 30.60 0.16 -0.70 16 5 C -0.11 -0.76 4.80 30.59 0.15 -0.61 16 6 C -0.11 -1.20 4.55 30.59 0.14 -1.06 16 7 C 0.13 2.18 1.01 2.98 0.00 2.18 16 8 C -0.15 -1.85 8.71 71.98 0.63 -1.23 16 9 N -0.70 -12.43 5.41 -439.83 -2.38 -14.81 16 10 C 0.70 20.05 8.62 179.44 1.55 21.59 16 11 O -0.58 -21.24 17.48 -3.84 -0.07 -21.31 16 12 N -0.58 -17.46 2.60 -773.11 -2.01 -19.47 16 13 C 0.12 4.06 5.70 86.38 0.49 4.55 16 14 C -0.10 -4.38 5.48 30.60 0.17 -4.22 16 15 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 16 C -0.54 -32.53 9.66 25.60 0.25 -32.29 16 17 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 18 C 0.00 0.18 5.47 84.65 0.46 0.65 16 19 N -0.95 -61.33 13.96 21.45 0.30 -61.03 16 20 Si 0.95 45.13 27.47 68.60 1.88 47.01 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 22 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.24 -10.42 6.54 99.48 0.65 -9.77 16 24 C 0.52 13.87 6.99 87.94 0.61 14.49 16 25 O -0.49 -15.71 17.76 -2.89 -0.05 -15.76 16 26 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 27 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 35 H 0.09 0.34 6.75 -2.39 -0.02 0.32 16 36 H 0.07 0.44 7.04 -2.39 -0.02 0.42 16 37 H 0.06 0.88 8.13 -2.39 -0.02 0.86 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 0.69 6.81 -2.39 -0.02 0.67 16 40 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.45 5.32 8.12 -92.71 -0.75 4.56 16 43 H 0.10 3.22 8.00 -2.39 -0.02 3.21 16 44 H 0.10 3.23 7.86 -2.39 -0.02 3.21 16 45 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 47 H 0.03 1.40 7.20 -2.39 -0.02 1.38 16 48 H 0.03 1.23 7.57 -2.38 -0.02 1.21 16 49 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -77.56 394.51 3.56 -74.00 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.10 Total: 10.21 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: 5.78 Total: 1.16 kcal Atomic # 7 Polarization: -91.22 SS G_CDS: -4.10 Total: -95.31 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: -0.12 Total: -37.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 1.88 Total: 47.01 kcal Total: -77.56 3.56 -74.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727410737.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.192 kcal (2) G-P(sol) polarization free energy of solvation -77.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds