Wall clock time and date at job start Fri Apr 10 2020 22:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47066 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47454 * 180.02562 * 6 5 4 8 8 C 1.53005 * 110.53262 * 300.69941 * 7 6 5 9 9 N 1.47305 * 110.59905 * 63.52928 * 7 6 5 10 10 C 1.34867 * 106.43812 * 118.48007 * 9 7 6 11 11 O 1.21545 * 123.72845 * 180.02562 * 10 9 7 12 12 N 1.33789 * 112.49981 * 0.13393 * 10 9 7 13 13 C 1.46506 * 124.17603 * 179.87462 * 12 10 9 14 14 C 1.53001 * 109.47025 * 270.04499 * 13 12 10 15 15 C 1.53005 * 109.46949 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46864 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00531 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99700 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47212 * 89.99769 * 20 18 16 22 22 H 1.48507 * 109.46991 * 209.99703 * 20 18 16 23 23 H 1.48496 * 109.47207 * 329.99588 * 20 18 16 24 24 C 1.34761 * 111.64705 * 359.91367 * 12 10 9 25 25 O 1.21232 * 127.15974 * 180.02562 * 24 12 10 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 34 34 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 35 35 H 1.08996 * 109.47340 * 299.99580 * 5 4 3 36 36 H 1.09002 * 109.47726 * 60.00012 * 5 4 3 37 37 H 1.09004 * 109.47006 * 299.99972 * 6 5 4 38 38 H 1.09002 * 109.47097 * 59.99954 * 6 5 4 39 39 H 1.09001 * 109.46570 * 59.99928 * 8 7 6 40 40 H 1.08998 * 109.47021 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.46690 * 300.00052 * 8 7 6 42 42 H 0.97002 * 126.69287 * 298.47795 * 9 7 6 43 43 H 1.08998 * 109.46842 * 30.04478 * 13 12 10 44 44 H 1.08991 * 109.47006 * 150.04329 * 13 12 10 45 45 H 1.09004 * 109.46626 * 299.99528 * 14 13 12 46 46 H 1.08991 * 109.47367 * 60.00052 * 14 13 12 47 47 H 1.08998 * 109.46765 * 299.99885 * 15 14 13 48 48 H 1.09001 * 109.46676 * 59.99620 * 15 14 13 49 49 H 0.97001 * 119.99462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 -0.0013 7 6 6.1200 4.3276 0.0000 8 6 5.6081 5.0789 -1.2307 9 7 5.7143 5.0196 1.2355 10 6 6.8527 5.3714 1.8673 11 8 6.8804 5.9644 2.9279 12 7 7.9476 4.9972 1.1957 13 6 9.3177 5.2519 1.6479 14 6 9.7925 6.6000 1.1020 15 6 11.2236 6.8658 1.5737 16 6 11.6915 8.1933 1.0355 17 1 11.0342 8.7878 0.4184 18 6 12.9592 8.6484 1.3301 19 7 13.7599 7.9242 2.0812 20 14 13.5390 10.2943 0.6636 21 1 13.1979 11.3680 1.6310 22 1 15.0101 10.2570 0.4639 23 1 12.8701 10.5663 -0.6340 24 6 7.6346 4.3577 0.0515 25 8 8.4043 3.9010 -0.7663 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9286 0.8891 34 1 3.9330 0.9288 -0.8909 35 1 3.7163 3.3993 -0.8895 36 1 3.7170 3.3984 0.8904 37 1 5.9741 2.3706 0.8880 38 1 5.9726 2.3719 -0.8920 39 1 4.5182 5.0890 -1.2229 40 1 5.9808 6.1030 -1.2122 41 1 5.9604 4.5799 -2.1334 42 1 4.8069 5.1882 1.5342 43 1 9.3428 5.2718 2.7374 44 1 9.9734 4.4611 1.2837 45 1 9.7673 6.5800 0.0124 46 1 9.1368 7.3908 1.4661 47 1 11.2492 6.8855 2.6632 48 1 11.8790 6.0748 1.2091 49 1 14.6519 8.2443 2.2881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000727410739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:35 Heat of formation + Delta-G solvation = -91.621708 kcal Electronic energy + Delta-G solvation = -25797.061402 eV Core-core repulsion = 22144.345939 eV Total energy + Delta-G solvation = -3652.715463 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.48979 -38.52463 -37.66439 -36.26935 -35.67868 -34.02882 -33.08486 -31.45091 -30.84306 -28.51978 -27.34667 -25.67088 -24.08836 -23.53206 -22.23501 -21.45325 -20.80367 -20.53630 -19.94622 -17.89586 -16.64776 -16.51769 -16.35529 -16.11770 -15.64789 -15.21087 -15.04721 -14.53624 -14.41248 -14.33036 -14.05515 -13.93103 -13.75146 -13.30564 -13.00580 -12.76555 -12.66817 -12.47485 -12.18293 -12.10174 -11.83474 -11.65795 -11.48095 -11.36421 -11.12138 -11.03997 -10.97635 -10.86701 -10.83148 -10.75503 -10.50402 -10.02472 -9.78083 -9.73496 -9.56314 -9.27913 -8.98297 -8.33151 -5.98247 -4.00386 1.67450 2.32722 3.06853 3.13740 3.34407 3.40145 3.43904 3.84705 4.10316 4.33021 4.45719 4.48237 4.52163 4.61993 4.71962 4.89407 5.01716 5.04448 5.12722 5.23613 5.30138 5.33848 5.37581 5.38369 5.39149 5.42290 5.53250 5.61195 5.65883 5.66766 5.69603 5.76305 5.77563 5.79655 5.85045 5.93730 5.97470 6.02969 6.53749 6.73943 6.76382 7.02729 7.19663 7.47313 7.66067 7.79485 8.00205 8.21064 8.42952 9.05288 9.63293 11.13151 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.002182 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.341132 B =12826.687985 C =12936.335946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.120 4.120 4 C -0.121 4.121 5 C -0.119 4.119 6 C -0.113 4.113 7 C 0.120 3.880 8 C -0.148 4.148 9 N -0.726 5.726 10 C 0.701 3.299 11 O -0.538 6.538 12 N -0.571 5.571 13 C 0.114 3.886 14 C -0.123 4.123 15 C 0.025 3.975 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.894 5.894 20 Si 0.893 3.107 21 H -0.280 1.280 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.527 3.473 25 O -0.463 6.463 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.435 0.565 43 H 0.093 0.907 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.020 0.980 48 H 0.020 0.980 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.205 -15.277 -5.770 30.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.158 4.158 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.151 4.151 7 C 0.029 3.971 8 C -0.206 4.206 9 N -0.391 5.391 10 C 0.402 3.598 11 O -0.411 6.411 12 N -0.316 5.316 13 C -0.005 4.005 14 C -0.161 4.161 15 C -0.012 4.012 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.721 3.279 21 H -0.206 1.206 22 H -0.212 1.212 23 H -0.199 1.199 24 C 0.313 3.687 25 O -0.332 6.332 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.279 0.721 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.039 0.961 48 H 0.038 0.962 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -25.443 -15.198 -5.533 30.148 hybrid contribution 0.045 1.031 -0.140 1.041 sum -25.398 -14.167 -5.673 29.630 Atomic orbital electron populations 1.21783 0.95966 1.01567 1.01787 1.21543 0.95810 0.97015 1.02035 1.21625 0.95305 0.96765 1.02097 1.21600 0.95397 0.96402 1.02412 1.21629 0.93882 0.97539 1.02565 1.21804 0.96763 0.92344 1.04225 1.21467 0.92401 0.95496 0.87710 1.22031 1.02373 1.00866 0.95374 1.45740 1.07946 1.62166 1.23275 1.16024 0.81041 0.79212 0.83556 1.91022 1.85591 1.43603 1.20856 1.46631 1.09510 1.53143 1.22283 1.22107 0.76469 1.00700 1.01244 1.22001 1.00873 0.93213 1.00029 1.19034 0.88364 0.97022 0.96829 1.21187 0.98998 1.04113 1.31507 0.92710 1.25014 0.96788 0.97387 0.95228 1.69963 1.08099 1.37743 1.37558 0.86573 0.77800 0.84168 0.79344 1.20646 1.21188 1.19919 1.20716 0.90356 0.76717 0.80926 1.90794 1.56990 1.44513 1.40919 0.92774 0.92861 0.92785 0.92073 0.92054 0.91975 0.92003 0.91874 0.91701 0.91040 0.91738 0.90772 0.89278 0.90251 0.91215 0.89835 0.72091 0.88863 0.89081 0.92890 0.92602 0.96131 0.96206 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.13 -0.63 5.93 -26.73 -0.16 -0.79 16 3 C -0.12 -0.59 5.21 -26.73 -0.14 -0.73 16 4 C -0.12 -0.62 5.21 -26.73 -0.14 -0.76 16 5 C -0.12 -0.62 4.75 -26.73 -0.13 -0.75 16 6 C -0.11 -0.84 4.57 -26.73 -0.12 -0.96 16 7 C 0.12 1.17 1.01 -132.09 -0.13 1.03 16 8 C -0.15 -1.17 8.60 37.16 0.32 -0.85 16 9 N -0.73 -7.46 5.59 -52.84 -0.30 -7.75 16 10 C 0.70 10.71 8.63 -87.72 -0.76 9.95 16 11 O -0.54 -10.20 17.48 5.33 0.09 -10.11 16 12 N -0.57 -9.11 2.60 -120.63 -0.31 -9.43 16 13 C 0.11 2.09 5.70 -4.04 -0.02 2.06 16 14 C -0.12 -2.67 5.48 -26.73 -0.15 -2.81 16 15 C 0.03 0.66 4.97 -27.88 -0.14 0.53 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 17 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 20 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.53 7.56 6.98 -10.56 -0.07 7.49 16 25 O -0.46 -7.81 17.76 5.60 0.10 -7.72 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.32 6.50 -51.93 -0.34 -0.02 16 36 H 0.06 0.32 7.30 -51.93 -0.38 -0.06 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.42 6.52 -51.93 -0.34 0.09 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.43 3.29 8.32 -40.82 -0.34 2.95 16 43 H 0.09 1.70 7.86 -51.93 -0.41 1.29 16 44 H 0.09 1.61 8.00 -51.93 -0.42 1.19 16 45 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -33.92 398.08 -9.33 -43.26 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.95 Total: -4.05 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -1.68 Total: -0.81 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.13 Total: -43.68 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: 0.19 Total: -17.83 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.92 -9.33 -43.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727410739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.366 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds