Wall clock time and date at job start Fri Apr 10 2020 22:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53002 * 109.47628 * 180.02562 * 3 2 1 5 5 C 1.52993 * 109.47066 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47066 * 180.02562 * 5 4 3 7 7 C 1.53002 * 109.47454 * 180.02562 * 6 5 4 8 8 C 1.53005 * 110.53262 * 300.69941 * 7 6 5 9 9 N 1.47305 * 110.59905 * 63.52928 * 7 6 5 10 10 C 1.34867 * 106.43812 * 118.48007 * 9 7 6 11 11 O 1.21545 * 123.72845 * 180.02562 * 10 9 7 12 12 N 1.33789 * 112.49981 * 0.13393 * 10 9 7 13 13 C 1.46506 * 124.17603 * 179.87462 * 12 10 9 14 14 C 1.53001 * 109.47025 * 270.04499 * 13 12 10 15 15 C 1.53005 * 109.46949 * 180.02562 * 14 13 12 16 16 C 1.50696 * 109.46864 * 179.97438 * 15 14 13 17 17 H 1.07996 * 120.00531 * 359.97438 * 16 15 14 18 18 C 1.37882 * 119.99700 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99980 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 119.99796 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47212 * 89.99769 * 20 18 16 22 22 H 1.48507 * 109.46991 * 209.99703 * 20 18 16 23 23 H 1.48496 * 109.47207 * 329.99588 * 20 18 16 24 24 C 1.34761 * 111.64705 * 359.91367 * 12 10 9 25 25 O 1.21232 * 127.15974 * 180.02562 * 24 12 10 26 26 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 31 31 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 32 32 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 33 33 H 1.08996 * 109.46698 * 300.00222 * 4 3 2 34 34 H 1.09002 * 109.46838 * 59.99718 * 4 3 2 35 35 H 1.08996 * 109.47340 * 299.99580 * 5 4 3 36 36 H 1.09002 * 109.47726 * 60.00012 * 5 4 3 37 37 H 1.09004 * 109.47006 * 299.99972 * 6 5 4 38 38 H 1.09002 * 109.47097 * 59.99954 * 6 5 4 39 39 H 1.09001 * 109.46570 * 59.99928 * 8 7 6 40 40 H 1.08998 * 109.47021 * 179.97438 * 8 7 6 41 41 H 1.08996 * 109.46690 * 300.00052 * 8 7 6 42 42 H 0.97002 * 126.69287 * 298.47795 * 9 7 6 43 43 H 1.08998 * 109.46842 * 30.04478 * 13 12 10 44 44 H 1.08991 * 109.47006 * 150.04329 * 13 12 10 45 45 H 1.09004 * 109.46626 * 299.99528 * 14 13 12 46 46 H 1.08991 * 109.47367 * 60.00052 * 14 13 12 47 47 H 1.08998 * 109.46765 * 299.99885 * 15 14 13 48 48 H 1.09001 * 109.46676 * 59.99620 * 15 14 13 49 49 H 0.97001 * 119.99462 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0799 2.8850 0.0000 6 6 5.6099 2.8851 -0.0013 7 6 6.1200 4.3276 0.0000 8 6 5.6081 5.0789 -1.2307 9 7 5.7143 5.0196 1.2355 10 6 6.8527 5.3714 1.8673 11 8 6.8804 5.9644 2.9279 12 7 7.9476 4.9972 1.1957 13 6 9.3177 5.2519 1.6479 14 6 9.7925 6.6000 1.1020 15 6 11.2236 6.8658 1.5737 16 6 11.6915 8.1933 1.0355 17 1 11.0342 8.7878 0.4184 18 6 12.9592 8.6484 1.3301 19 7 13.7599 7.9242 2.0812 20 14 13.5390 10.2943 0.6636 21 1 13.1979 11.3680 1.6310 22 1 15.0101 10.2570 0.4639 23 1 12.8701 10.5663 -0.6340 24 6 7.6346 4.3577 0.0515 25 8 8.4043 3.9010 -0.7663 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 3.9337 0.9286 0.8891 34 1 3.9330 0.9288 -0.8909 35 1 3.7163 3.3993 -0.8895 36 1 3.7170 3.3984 0.8904 37 1 5.9741 2.3706 0.8880 38 1 5.9726 2.3719 -0.8920 39 1 4.5182 5.0890 -1.2229 40 1 5.9808 6.1030 -1.2122 41 1 5.9604 4.5799 -2.1334 42 1 4.8069 5.1882 1.5342 43 1 9.3428 5.2718 2.7374 44 1 9.9734 4.4611 1.2837 45 1 9.7673 6.5800 0.0124 46 1 9.1368 7.3908 1.4661 47 1 11.2492 6.8855 2.6632 48 1 11.8790 6.0748 1.2091 49 1 14.6519 8.2443 2.2881 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727410739.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:34 Heat of formation + Delta-G solvation = -111.908014 kcal Electronic energy + Delta-G solvation = -25797.941082 eV Core-core repulsion = 22144.345939 eV Total energy + Delta-G solvation = -3653.595143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.62902 -39.76492 -38.49734 -37.16882 -36.92994 -35.60152 -34.24520 -33.08068 -31.67076 -29.20085 -28.98411 -26.56247 -25.56152 -24.70275 -23.16102 -22.39707 -21.84212 -21.38849 -21.19438 -19.07484 -18.49633 -17.80446 -17.40339 -16.87594 -16.66032 -16.61286 -16.34105 -15.79683 -15.74031 -15.32146 -15.19774 -14.75547 -14.54006 -14.38235 -14.02103 -13.78553 -13.52351 -13.40435 -13.35201 -13.21460 -12.93369 -12.78071 -12.72308 -12.56785 -12.29297 -12.16757 -12.03037 -11.76539 -11.71972 -11.59949 -11.56371 -11.46238 -11.40421 -11.25251 -10.97732 -10.79193 -10.58475 -10.45291 -8.22841 -6.34263 0.52029 1.14447 1.38353 1.40195 1.51221 1.90207 2.11036 2.39356 2.84470 3.10233 3.42184 3.64161 3.84786 3.98854 4.07675 4.09613 4.19956 4.25936 4.28462 4.35601 4.39555 4.47135 4.55743 4.61008 4.66693 4.73412 4.83821 4.87800 4.94026 4.97103 4.97335 5.01098 5.04399 5.09957 5.16766 5.22450 5.30261 5.32821 5.43244 5.44692 5.55467 5.60060 5.62012 5.77610 5.79561 6.03240 6.18689 6.33339 6.79929 7.07162 7.34495 8.88973 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.002182 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.341132 B =12826.687985 C =12936.335946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.129 4.129 3 C -0.118 4.118 4 C -0.119 4.119 5 C -0.113 4.113 6 C -0.107 4.107 7 C 0.133 3.867 8 C -0.147 4.147 9 N -0.697 5.697 10 C 0.698 3.302 11 O -0.580 6.580 12 N -0.579 5.579 13 C 0.123 3.877 14 C -0.104 4.104 15 C 0.029 3.971 16 C -0.548 4.548 17 H 0.056 0.944 18 C 0.002 3.998 19 N -0.929 5.929 20 Si 0.967 3.033 21 H -0.272 1.272 22 H -0.278 1.278 23 H -0.265 1.265 24 C 0.519 3.481 25 O -0.492 6.492 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.055 0.945 41 H 0.090 0.910 42 H 0.451 0.549 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.047 0.953 47 H -0.001 1.001 48 H 0.001 0.999 49 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.350 -15.026 -7.205 32.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.146 4.146 7 C 0.043 3.957 8 C -0.205 4.205 9 N -0.363 5.363 10 C 0.398 3.602 11 O -0.456 6.456 12 N -0.324 5.324 13 C 0.002 3.998 14 C -0.142 4.142 15 C -0.009 4.009 16 C -0.586 4.586 17 H 0.075 0.925 18 C -0.197 4.197 19 N -0.569 5.569 20 Si 0.791 3.209 21 H -0.197 1.197 22 H -0.203 1.203 23 H -0.189 1.189 24 C 0.307 3.693 25 O -0.363 6.363 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.074 0.926 41 H 0.109 0.891 42 H 0.299 0.701 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.658 -14.971 -6.996 32.218 hybrid contribution 0.708 0.880 0.298 1.169 sum -26.950 -14.090 -6.698 31.140 Atomic orbital electron populations 1.21788 0.95795 1.01679 1.01896 1.21558 0.95994 0.97236 1.01823 1.21596 0.94951 0.96589 1.02367 1.21570 0.95615 0.96282 1.02188 1.21623 0.91773 0.97894 1.03739 1.21828 0.98432 0.90102 1.04221 1.21610 0.88648 0.97402 0.88077 1.22113 1.04541 0.99614 0.94198 1.45615 1.07369 1.60674 1.22684 1.16146 0.81863 0.78981 0.83174 1.90995 1.86213 1.45677 1.22730 1.46615 1.08811 1.53700 1.23256 1.21725 0.78340 0.98759 1.00937 1.21687 0.97927 0.95030 0.99597 1.18905 0.90868 0.95793 0.95314 1.21607 0.99687 1.05262 1.32008 0.92544 1.25972 0.96832 1.01545 0.95312 1.70087 1.08565 1.39733 1.38500 0.85423 0.77482 0.79012 0.78986 1.19727 1.20343 1.18913 1.21562 0.92519 0.75503 0.79706 1.90774 1.58387 1.45532 1.41565 0.92807 0.92813 0.92514 0.92522 0.92077 0.91385 0.91999 0.92574 0.91577 0.89337 0.91058 0.91576 0.88699 0.86696 0.92612 0.89087 0.70075 0.89163 0.88706 0.93189 0.93411 0.98266 0.98035 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 71.98 0.71 -0.50 16 2 C -0.13 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.12 -0.86 5.21 30.59 0.16 -0.70 16 4 C -0.12 -0.93 5.21 30.59 0.16 -0.77 16 5 C -0.11 -0.79 4.75 30.59 0.15 -0.65 16 6 C -0.11 -1.32 4.57 30.60 0.14 -1.18 16 7 C 0.13 2.29 1.01 2.99 0.00 2.29 16 8 C -0.15 -1.86 8.60 71.98 0.62 -1.24 16 9 N -0.70 -12.93 5.59 -439.32 -2.46 -15.38 16 10 C 0.70 21.00 8.63 179.33 1.55 22.55 16 11 O -0.58 -22.16 17.48 -3.86 -0.07 -22.23 16 12 N -0.58 -18.55 2.60 -772.81 -2.01 -20.57 16 13 C 0.12 4.65 5.70 86.38 0.49 5.14 16 14 C -0.10 -4.66 5.48 30.60 0.17 -4.49 16 15 C 0.03 1.59 4.97 29.85 0.15 1.74 16 16 C -0.55 -32.50 9.11 25.60 0.23 -32.27 16 17 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 18 C 0.00 0.09 5.46 84.66 0.46 0.56 16 19 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 20 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 21 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 24 C 0.52 14.56 6.98 87.94 0.61 15.18 16 25 O -0.49 -16.50 17.76 -2.88 -0.05 -16.55 16 26 H 0.05 0.42 8.14 -2.39 -0.02 0.40 16 27 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.06 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.07 0.43 8.14 -2.39 -0.02 0.42 16 32 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.09 0.37 6.50 -2.39 -0.02 0.36 16 36 H 0.07 0.44 7.30 -2.39 -0.02 0.42 16 37 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.11 0.68 6.52 -2.39 -0.02 0.66 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 42 H 0.45 5.51 8.32 -92.71 -0.77 4.74 16 43 H 0.09 3.44 7.86 -2.39 -0.02 3.42 16 44 H 0.09 3.47 8.00 -2.39 -0.02 3.45 16 45 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 48 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 49 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -74.96 398.08 3.65 -71.31 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.14 Total: 8.42 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: 5.79 Total: 4.76 kcal Atomic # 7 Polarization: -89.00 SS G_CDS: -4.18 Total: -93.19 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.12 Total: -38.78 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.96 3.65 -71.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727410739.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.597 kcal (2) G-P(sol) polarization free energy of solvation -74.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds