Wall clock time and date at job start Fri Apr 10 2020 22:28:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.32996 * 119.99879 * 124.72294 * 4 3 2 6 6 C 1.47108 * 120.00028 * 180.27629 * 5 4 3 7 7 O 1.21613 * 119.99489 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99860 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00476 * 0.02562 * 8 6 5 10 10 C 1.50703 * 109.47468 * 89.99355 * 9 8 6 11 11 H 1.08005 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00219 * 179.97438 * 10 9 8 13 13 N 1.31506 * 119.99829 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99711 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47479 * 89.99543 * 14 12 10 16 16 H 1.48510 * 109.46659 * 209.99696 * 14 12 10 17 17 H 1.48501 * 109.47086 * 329.99221 * 14 12 10 18 18 C 1.46499 * 119.99981 * 179.97438 * 8 6 5 19 19 C 1.53002 * 109.47088 * 89.99984 * 18 8 6 20 20 N 1.46902 * 109.47307 * 180.02562 * 19 18 8 21 21 C 1.47017 * 111.00158 * 293.63923 * 20 19 18 22 22 C 1.53094 * 109.25760 * 177.60796 * 21 20 19 23 23 O 1.43013 * 109.26210 * 56.84953 * 22 21 20 24 24 C 1.43015 * 113.73500 * 301.33015 * 23 22 21 25 25 C 1.47009 * 110.99959 * 170.00324 * 20 19 18 26 26 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 300.00030 * 1 2 3 28 28 H 1.08997 * 109.47649 * 59.99665 * 1 2 3 29 29 H 1.09002 * 109.46801 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47131 * 120.00362 * 2 1 3 31 31 H 1.09002 * 109.47207 * 60.00218 * 3 2 1 32 32 H 1.08999 * 109.47313 * 300.00250 * 3 2 1 33 33 H 1.08002 * 120.00299 * 305.00583 * 4 3 2 34 34 H 1.08001 * 120.00297 * 0.27681 * 5 4 3 35 35 H 1.08997 * 109.47484 * 209.99670 * 9 8 6 36 36 H 1.09004 * 109.47079 * 329.99527 * 9 8 6 37 37 H 0.96999 * 119.99901 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.47940 * 210.00308 * 18 8 6 39 39 H 1.09005 * 109.47076 * 330.00568 * 18 8 6 40 40 H 1.08999 * 109.47707 * 300.00330 * 19 18 8 41 41 H 1.09005 * 109.46685 * 60.00344 * 19 18 8 42 42 H 1.09001 * 109.50375 * 297.54475 * 21 20 19 43 43 H 1.08997 * 109.50611 * 57.66529 * 21 20 19 44 44 H 1.08995 * 109.50682 * 296.91248 * 22 21 20 45 45 H 1.09004 * 109.54199 * 176.80539 * 22 21 20 46 46 H 1.08999 * 109.50749 * 298.73579 * 24 23 22 47 47 H 1.08999 * 109.54065 * 178.62437 * 24 23 22 48 48 H 1.09001 * 109.50751 * 302.32673 * 25 20 19 49 49 H 1.08998 * 109.51009 * 62.41790 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2116 2.0986 -0.9475 6 6 5.6826 2.0935 -0.9517 7 8 6.2910 1.4889 -0.0895 8 7 6.3560 2.7581 -1.9114 9 6 5.6232 3.4859 -2.9503 10 6 5.3786 4.9014 -2.4945 11 1 5.7339 5.2264 -1.5278 12 6 4.7021 5.7818 -3.3121 13 7 4.4891 7.0171 -2.9145 14 14 4.0882 5.2198 -4.9844 15 1 2.7131 4.6757 -4.8497 16 1 4.0749 6.3731 -5.9199 17 1 4.9887 4.1639 -5.5130 18 6 7.8210 2.7535 -1.9153 19 6 8.3252 1.5679 -2.7405 20 7 9.7942 1.5629 -2.7439 21 6 10.3234 2.7311 -3.4627 22 6 11.8526 2.7181 -3.3907 23 8 12.3397 1.4855 -3.9279 24 6 11.8448 0.3270 -3.2511 25 6 10.3154 0.3157 -3.3217 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 4.0874 0.9057 0.7652 34 1 3.6713 2.6352 -1.7134 35 1 6.2095 3.4963 -3.8691 36 1 4.6683 2.9933 -3.1342 37 1 4.0129 7.6363 -3.4895 38 1 8.1862 3.6824 -2.3532 39 1 8.1868 2.6657 -0.8922 40 1 7.9601 0.6389 -2.3026 41 1 7.9594 1.6556 -3.7636 42 1 10.0077 2.6906 -4.5052 43 1 9.9449 3.6438 -3.0024 44 1 12.1688 2.8126 -2.3519 45 1 12.2519 3.5507 -3.9698 46 1 12.1608 0.3519 -2.2082 47 1 12.2378 -0.5703 -3.7292 48 1 9.9314 -0.5348 -2.7585 49 1 9.9991 0.2362 -4.3618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729352446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:37 Heat of formation + Delta-G solvation = -68.073217 kcal Electronic energy + Delta-G solvation = -26195.024864 eV Core-core repulsion = 22543.330540 eV Total energy + Delta-G solvation = -3651.694324 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.71285 -39.09127 -36.33936 -35.71095 -34.87308 -32.62328 -32.08614 -31.27410 -30.00873 -27.83786 -27.17702 -25.70955 -24.07153 -22.80439 -22.52286 -21.46865 -20.41433 -19.91930 -18.04672 -17.10572 -16.75019 -16.54505 -16.18707 -15.67920 -15.22168 -15.09444 -14.90792 -14.69603 -14.35010 -14.11339 -13.88719 -13.57187 -13.26296 -13.10541 -12.91260 -12.53599 -12.36876 -12.32073 -12.07523 -11.92721 -11.54512 -11.47976 -11.43490 -11.22990 -11.09128 -10.86983 -10.78842 -10.71803 -10.64594 -10.43301 -10.26003 -9.77513 -9.63991 -9.18538 -8.92510 -8.75208 -8.40402 -7.78420 -6.24706 -4.26287 1.90346 3.12915 3.21005 3.22607 3.50542 3.78617 3.92227 4.15217 4.22489 4.80612 4.88600 4.95695 4.98391 5.00573 5.05553 5.08099 5.09762 5.20919 5.33002 5.46650 5.46704 5.50090 5.51016 5.58447 5.69848 5.71301 5.76588 5.77388 5.83818 5.88394 5.89318 5.92845 6.06091 6.16285 6.20449 6.30644 6.38413 6.38982 6.60401 6.82844 6.93213 6.94352 6.96149 7.06362 7.34262 7.40588 8.09308 8.37989 8.80727 8.91619 9.34284 10.88069 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003984 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.249020 B = 7027.160078 C = 9205.683076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.096 4.096 4 C -0.092 4.092 5 C -0.189 4.189 6 C 0.548 3.452 7 O -0.571 6.571 8 N -0.586 5.586 9 C 0.209 3.791 10 C -0.539 4.539 11 H 0.079 0.921 12 C 0.077 3.923 13 N -0.890 5.890 14 Si 0.869 3.131 15 H -0.272 1.272 16 H -0.283 1.283 17 H -0.265 1.265 18 C 0.126 3.874 19 C 0.044 3.956 20 N -0.533 5.533 21 C 0.011 3.989 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.019 3.981 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.120 0.880 34 H 0.134 0.866 35 H 0.031 0.969 36 H 0.032 0.968 37 H 0.267 0.733 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.036 0.964 42 H 0.043 0.957 43 H 0.094 0.906 44 H 0.060 0.940 45 H 0.098 0.902 46 H 0.059 0.941 47 H 0.095 0.905 48 H 0.085 0.915 49 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -12.838 -0.404 13.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.134 4.134 4 C -0.112 4.112 5 C -0.209 4.209 6 C 0.339 3.661 7 O -0.454 6.454 8 N -0.315 5.315 9 C 0.087 3.913 10 C -0.578 4.578 11 H 0.097 0.903 12 C -0.127 4.127 13 N -0.527 5.527 14 Si 0.696 3.304 15 H -0.198 1.198 16 H -0.208 1.208 17 H -0.190 1.190 18 C 0.002 3.998 19 C -0.084 4.084 20 N -0.258 5.258 21 C -0.117 4.117 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.138 0.862 34 H 0.152 0.848 35 H 0.049 0.951 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.097 0.903 39 H 0.102 0.898 40 H 0.095 0.905 41 H 0.054 0.946 42 H 0.062 0.938 43 H 0.113 0.887 44 H 0.078 0.922 45 H 0.116 0.884 46 H 0.078 0.922 47 H 0.113 0.887 48 H 0.103 0.897 49 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.305 -12.916 0.272 13.617 hybrid contribution -0.992 0.087 -1.677 1.950 sum 3.312 -12.829 -1.404 13.323 Atomic orbital electron populations 1.21786 0.95856 1.01407 1.01945 1.21471 0.95586 0.96423 1.02278 1.20823 0.92214 0.97170 1.03151 1.23535 0.95413 0.95470 0.96783 1.22903 0.93706 1.02448 1.01874 1.18545 0.88383 0.78392 0.80801 1.90686 1.70580 1.45861 1.38263 1.47749 1.05744 1.49505 1.28498 1.19849 0.91971 0.92745 0.86690 1.21383 1.37521 0.93429 1.05440 0.90314 1.24866 0.95289 0.94682 0.97824 1.69886 1.40826 1.04575 1.37413 0.86963 0.79978 0.78896 0.84604 1.19787 1.20811 1.18999 1.21192 0.80236 0.97049 1.01353 1.22516 0.85822 1.00864 0.99232 1.62127 1.08325 1.01932 1.53456 1.22897 0.96071 0.95249 0.97473 1.22683 0.92511 0.86570 0.99476 1.87956 1.70168 1.14343 1.58308 1.22642 0.92261 0.88612 0.97683 1.22764 0.96320 0.93407 0.98498 0.92907 0.92718 0.92627 0.91873 0.91865 0.90452 0.90917 0.86248 0.84845 0.95100 0.95035 0.92341 0.90291 0.89785 0.90489 0.94605 0.93842 0.88744 0.92159 0.88435 0.92231 0.88695 0.89686 0.94123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.91 37.15 0.37 -1.04 16 2 C -0.12 -1.29 5.92 -26.74 -0.16 -1.45 16 3 C -0.10 -1.23 5.67 -27.88 -0.16 -1.38 16 4 C -0.09 -1.46 9.09 -36.12 -0.33 -1.78 16 5 C -0.19 -3.52 8.82 -37.80 -0.33 -3.85 16 6 C 0.55 11.49 7.62 -12.67 -0.10 11.39 16 7 O -0.57 -12.89 15.80 5.27 0.08 -12.81 16 8 N -0.59 -12.09 2.46 -176.46 -0.43 -12.52 16 9 C 0.21 4.59 3.94 -5.19 -0.02 4.57 16 10 C -0.54 -14.13 9.94 -34.44 -0.34 -14.47 16 11 H 0.08 2.33 8.06 -52.48 -0.42 1.91 16 12 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 13 N -0.89 -25.65 13.96 55.43 0.77 -24.88 16 14 Si 0.87 19.57 27.47 -169.99 -4.67 14.90 16 15 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.27 -5.68 6.54 56.52 0.37 -5.31 16 18 C 0.13 2.31 5.34 -4.04 -0.02 2.29 16 19 C 0.04 0.70 5.28 -3.82 -0.02 0.68 16 20 N -0.53 -7.50 4.73 -234.31 -1.11 -8.61 16 21 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 22 C 0.06 0.74 7.01 37.21 0.26 1.00 16 23 O -0.39 -4.94 10.83 -35.23 -0.38 -5.32 16 24 C 0.07 0.70 7.01 37.21 0.26 0.96 16 25 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.94 7.82 -51.93 -0.41 0.54 16 33 H 0.12 1.92 7.49 -52.49 -0.39 1.53 16 34 H 0.13 2.52 6.04 -52.49 -0.32 2.21 16 35 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 36 H 0.03 0.67 5.52 -51.93 -0.29 0.38 16 37 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 38 H 0.08 1.45 6.45 -51.93 -0.33 1.11 16 39 H 0.08 1.64 7.42 -51.93 -0.39 1.25 16 40 H 0.08 1.28 8.04 -51.93 -0.42 0.86 16 41 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 42 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 1.26 6.38 -51.93 -0.33 0.92 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 49 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 390.66 15.07 5.89 5.89 Total: -1.00 -30.42 390.66 -9.32 -39.74 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -8.75 Total: 4.39 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: -0.73 Total: -0.79 kcal Atomic # 7 Polarization: -45.24 SS G_CDS: -0.77 Total: -46.01 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.30 Total: -18.13 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.67 Total: 14.90 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.42 -9.32 -39.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.329 kcal (2) G-P(sol) polarization free energy of solvation -30.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds