Wall clock time and date at job start Fri Apr 10 2020 22:28:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47322 * 2 1 4 4 C 1.50702 * 109.47175 * 180.02562 * 3 2 1 5 5 C 1.32996 * 119.99879 * 124.72294 * 4 3 2 6 6 C 1.47108 * 120.00028 * 180.27629 * 5 4 3 7 7 O 1.21613 * 119.99489 * 0.02562 * 6 5 4 8 8 N 1.34768 * 119.99860 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00476 * 0.02562 * 8 6 5 10 10 C 1.50703 * 109.47468 * 89.99355 * 9 8 6 11 11 H 1.08005 * 119.99703 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00219 * 179.97438 * 10 9 8 13 13 N 1.31506 * 119.99829 * 180.02562 * 12 10 9 14 14 Si 1.86797 * 119.99711 * 0.02562 * 12 10 9 15 15 H 1.48497 * 109.47479 * 89.99543 * 14 12 10 16 16 H 1.48510 * 109.46659 * 209.99696 * 14 12 10 17 17 H 1.48501 * 109.47086 * 329.99221 * 14 12 10 18 18 C 1.46499 * 119.99981 * 179.97438 * 8 6 5 19 19 C 1.53002 * 109.47088 * 89.99984 * 18 8 6 20 20 N 1.46902 * 109.47307 * 180.02562 * 19 18 8 21 21 C 1.47017 * 111.00158 * 293.63923 * 20 19 18 22 22 C 1.53094 * 109.25760 * 177.60796 * 21 20 19 23 23 O 1.43013 * 109.26210 * 56.84953 * 22 21 20 24 24 C 1.43015 * 113.73500 * 301.33015 * 23 22 21 25 25 C 1.47009 * 110.99959 * 170.00324 * 20 19 18 26 26 H 1.09000 * 109.47568 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46801 * 300.00030 * 1 2 3 28 28 H 1.08997 * 109.47649 * 59.99665 * 1 2 3 29 29 H 1.09002 * 109.46801 * 239.99970 * 2 1 3 30 30 H 1.08999 * 109.47131 * 120.00362 * 2 1 3 31 31 H 1.09002 * 109.47207 * 60.00218 * 3 2 1 32 32 H 1.08999 * 109.47313 * 300.00250 * 3 2 1 33 33 H 1.08002 * 120.00299 * 305.00583 * 4 3 2 34 34 H 1.08001 * 120.00297 * 0.27681 * 5 4 3 35 35 H 1.08997 * 109.47484 * 209.99670 * 9 8 6 36 36 H 1.09004 * 109.47079 * 329.99527 * 9 8 6 37 37 H 0.96999 * 119.99901 * 180.02562 * 13 12 10 38 38 H 1.08995 * 109.47940 * 210.00308 * 18 8 6 39 39 H 1.09005 * 109.47076 * 330.00568 * 18 8 6 40 40 H 1.08999 * 109.47707 * 300.00330 * 19 18 8 41 41 H 1.09005 * 109.46685 * 60.00344 * 19 18 8 42 42 H 1.09001 * 109.50375 * 297.54475 * 21 20 19 43 43 H 1.08997 * 109.50611 * 57.66529 * 21 20 19 44 44 H 1.08995 * 109.50682 * 296.91248 * 22 21 20 45 45 H 1.09004 * 109.54199 * 176.80539 * 22 21 20 46 46 H 1.08999 * 109.50749 * 298.73579 * 24 23 22 47 47 H 1.08999 * 109.54065 * 178.62437 * 24 23 22 48 48 H 1.09001 * 109.50751 * 302.32673 * 25 20 19 49 49 H 1.08998 * 109.51009 * 62.41790 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 6 4.2116 2.0986 -0.9475 6 6 5.6826 2.0935 -0.9517 7 8 6.2910 1.4889 -0.0895 8 7 6.3560 2.7581 -1.9114 9 6 5.6232 3.4859 -2.9503 10 6 5.3786 4.9014 -2.4945 11 1 5.7339 5.2264 -1.5278 12 6 4.7021 5.7818 -3.3121 13 7 4.4891 7.0171 -2.9145 14 14 4.0882 5.2198 -4.9844 15 1 2.7131 4.6757 -4.8497 16 1 4.0749 6.3731 -5.9199 17 1 4.9887 4.1639 -5.5130 18 6 7.8210 2.7535 -1.9153 19 6 8.3252 1.5679 -2.7405 20 7 9.7942 1.5629 -2.7439 21 6 10.3234 2.7311 -3.4627 22 6 11.8526 2.7181 -3.3907 23 8 12.3397 1.4855 -3.9279 24 6 11.8448 0.3270 -3.2511 25 6 10.3154 0.3157 -3.3217 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6766 1.9563 -0.8899 33 1 4.0874 0.9057 0.7652 34 1 3.6713 2.6352 -1.7134 35 1 6.2095 3.4963 -3.8691 36 1 4.6683 2.9933 -3.1342 37 1 4.0129 7.6363 -3.4895 38 1 8.1862 3.6824 -2.3532 39 1 8.1868 2.6657 -0.8922 40 1 7.9601 0.6389 -2.3026 41 1 7.9594 1.6556 -3.7636 42 1 10.0077 2.6906 -4.5052 43 1 9.9449 3.6438 -3.0024 44 1 12.1688 2.8126 -2.3519 45 1 12.2519 3.5507 -3.9698 46 1 12.1608 0.3519 -2.2082 47 1 12.2378 -0.5703 -3.7292 48 1 9.9314 -0.5348 -2.7585 49 1 9.9991 0.2362 -4.3618 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729352446.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:36 Heat of formation + Delta-G solvation = -87.367236 kcal Electronic energy + Delta-G solvation = -26195.861515 eV Core-core repulsion = 22543.330540 eV Total energy + Delta-G solvation = -3652.530975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.04047 -40.38722 -37.60922 -36.81417 -36.41613 -34.56912 -33.29277 -32.22584 -31.39500 -29.59762 -28.28787 -26.88745 -25.04815 -24.57854 -23.85207 -22.48351 -21.43901 -21.22698 -19.61764 -19.08017 -18.28068 -17.81062 -17.19883 -17.01128 -16.39125 -16.28684 -16.00500 -15.89783 -15.83934 -15.42804 -15.10303 -14.88396 -14.62052 -14.41278 -14.17217 -14.13195 -13.78541 -13.54878 -13.28844 -13.19696 -12.94297 -12.66892 -12.50202 -12.41000 -12.32845 -12.21942 -12.11079 -12.05679 -11.87175 -11.72369 -11.55457 -11.48179 -10.88638 -10.76910 -10.70285 -10.29528 -9.58857 -9.39781 -8.31749 -6.39534 0.46615 1.37531 1.39008 1.48328 2.09813 2.31824 2.36835 2.81887 2.96881 3.02023 3.61163 3.80812 3.88882 3.96134 4.02709 4.04943 4.17211 4.21249 4.25026 4.28499 4.33380 4.35021 4.41342 4.55750 4.61434 4.68275 4.70007 4.73421 4.75536 4.78915 4.80726 4.87957 4.91186 4.94861 4.99501 5.02358 5.20429 5.27674 5.40818 5.43790 5.47891 5.59437 5.67193 5.86593 5.89888 6.14405 6.15854 6.56223 6.66828 7.20602 7.30914 8.84836 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.009599 B = 0.003984 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2916.249020 B = 7027.160078 C = 9205.683076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.097 4.097 4 C -0.057 4.057 5 C -0.226 4.226 6 C 0.542 3.458 7 O -0.596 6.596 8 N -0.592 5.592 9 C 0.219 3.781 10 C -0.540 4.540 11 H 0.027 0.973 12 C 0.022 3.978 13 N -0.941 5.941 14 Si 0.939 3.061 15 H -0.258 1.258 16 H -0.284 1.284 17 H -0.242 1.242 18 C 0.127 3.873 19 C 0.061 3.939 20 N -0.542 5.542 21 C 0.011 3.989 22 C 0.067 3.933 23 O -0.402 6.402 24 C 0.065 3.935 25 C 0.018 3.982 26 H 0.064 0.936 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.070 0.930 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.118 0.882 34 H 0.130 0.870 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.036 0.964 42 H 0.039 0.961 43 H 0.086 0.914 44 H 0.062 0.938 45 H 0.115 0.885 46 H 0.062 0.938 47 H 0.121 0.879 48 H 0.094 0.906 49 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -14.903 -1.680 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.134 4.134 4 C -0.077 4.077 5 C -0.246 4.246 6 C 0.334 3.666 7 O -0.480 6.480 8 N -0.320 5.320 9 C 0.098 3.902 10 C -0.579 4.579 11 H 0.046 0.954 12 C -0.177 4.177 13 N -0.580 5.580 14 Si 0.761 3.239 15 H -0.183 1.183 16 H -0.210 1.210 17 H -0.166 1.166 18 C 0.004 3.996 19 C -0.068 4.068 20 N -0.268 5.268 21 C -0.117 4.117 22 C -0.009 4.009 23 O -0.321 6.321 24 C -0.011 4.011 25 C -0.110 4.110 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.136 0.864 34 H 0.148 0.852 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.081 0.919 45 H 0.133 0.867 46 H 0.080 0.920 47 H 0.139 0.861 48 H 0.112 0.888 49 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.694 -15.005 -1.002 15.485 hybrid contribution -0.782 0.741 -1.108 1.545 sum 2.911 -14.264 -2.110 14.710 Atomic orbital electron populations 1.21770 0.94472 1.02355 1.02196 1.21453 0.96740 0.94655 1.02579 1.20932 0.89694 0.98986 1.03764 1.23846 0.97226 0.92088 0.94535 1.22783 0.92368 1.05549 1.03940 1.18977 0.89452 0.77873 0.80306 1.90655 1.71282 1.47080 1.39012 1.47801 1.06570 1.49280 1.28382 1.19666 0.93071 0.90414 0.87083 1.21476 1.37164 0.95758 1.03479 0.95433 1.25759 0.95284 0.94404 1.02271 1.70048 1.42296 1.06251 1.39417 0.85845 0.80297 0.78905 0.78816 1.18266 1.20979 1.16554 1.21208 0.79297 0.98198 1.00907 1.22224 0.87205 0.98977 0.98351 1.62121 1.07017 1.03313 1.54326 1.22923 0.97342 0.94588 0.96881 1.22733 0.91138 0.87021 1.00046 1.87943 1.70330 1.14956 1.58851 1.22792 0.91203 0.89002 0.98148 1.22862 0.97272 0.92510 0.98379 0.91655 0.92140 0.92752 0.92108 0.91119 0.89023 0.91028 0.86384 0.85240 0.93980 0.93325 0.92192 0.90745 0.91420 0.91156 0.94576 0.94271 0.89569 0.91921 0.86657 0.91993 0.86132 0.88808 0.94209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 9.91 71.98 0.71 -1.67 16 2 C -0.12 -2.22 5.92 30.59 0.18 -2.04 16 3 C -0.10 -2.28 5.67 29.85 0.17 -2.11 16 4 C -0.06 -1.75 9.09 24.52 0.22 -1.53 16 5 C -0.23 -8.43 8.82 23.43 0.21 -8.22 16 6 C 0.54 23.14 7.62 86.57 0.66 23.80 16 7 O -0.60 -27.44 15.80 -4.07 -0.06 -27.50 16 8 N -0.59 -24.89 2.46 -830.45 -2.04 -26.93 16 9 C 0.22 9.61 3.94 85.63 0.34 9.94 16 10 C -0.54 -29.08 9.94 25.60 0.25 -28.83 16 11 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 12 C 0.02 1.18 5.47 84.66 0.46 1.65 16 13 N -0.94 -55.72 13.96 21.45 0.30 -55.42 16 14 Si 0.94 39.61 27.47 68.60 1.88 41.49 16 15 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 16 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 17 H -0.24 -9.26 6.54 99.48 0.65 -8.61 16 18 C 0.13 4.81 5.34 86.38 0.46 5.27 16 19 C 0.06 1.94 5.28 86.30 0.46 2.40 16 20 N -0.54 -14.97 4.73 -895.21 -4.23 -19.20 16 21 C 0.01 0.28 5.44 86.31 0.47 0.75 16 22 C 0.07 1.47 7.01 72.01 0.50 1.98 16 23 O -0.40 -9.48 10.83 -148.98 -1.61 -11.09 16 24 C 0.07 1.27 7.01 72.02 0.50 1.78 16 25 C 0.02 0.40 5.64 86.32 0.49 0.89 16 26 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 1.74 7.82 -2.39 -0.02 1.72 16 33 H 0.12 3.69 7.49 -2.91 -0.02 3.67 16 34 H 0.13 4.89 6.04 -2.91 -0.02 4.87 16 35 H 0.04 1.76 7.13 -2.39 -0.02 1.75 16 36 H 0.05 2.00 5.52 -2.38 -0.01 1.98 16 37 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 38 H 0.07 2.83 6.45 -2.39 -0.02 2.82 16 39 H 0.07 2.76 7.42 -2.38 -0.02 2.74 16 40 H 0.07 2.32 8.04 -2.39 -0.02 2.30 16 41 H 0.04 1.14 8.12 -2.38 -0.02 1.12 16 42 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.09 2.33 6.38 -2.39 -0.02 2.31 16 44 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 46 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 48 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 49 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -67.21 390.66 1.17 -66.04 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.84 Total: 28.55 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: 6.09 Total: 4.06 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -5.97 Total: -101.55 kcal Atomic # 8 Polarization: -36.91 SS G_CDS: -1.68 Total: -38.59 kcal Atomic # 14 Polarization: 39.61 SS G_CDS: 1.88 Total: 41.49 kcal Total: -67.21 1.17 -66.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352446.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.327 kcal (2) G-P(sol) polarization free energy of solvation -67.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds