Wall clock time and date at job start Fri Apr 10 2020 22:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 C 1.50703 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.32994 * 120.00345 * 135.66987 * 4 3 2 6 6 C 1.47100 * 119.99440 * 15.23605 * 5 4 3 7 7 O 1.21612 * 120.00772 * 6.81308 * 6 5 4 8 8 N 1.34778 * 119.99637 * 186.80955 * 6 5 4 9 9 C 1.46504 * 120.00129 * 0.27699 * 8 6 5 10 10 C 1.50698 * 109.46977 * 269.72274 * 9 8 6 11 11 H 1.08007 * 120.00442 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99920 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00064 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47417 * 90.00334 * 14 12 10 16 16 H 1.48506 * 109.47128 * 210.00180 * 14 12 10 17 17 H 1.48496 * 109.47022 * 329.99676 * 14 12 10 18 18 C 1.46504 * 119.99920 * 180.02562 * 8 6 5 19 19 C 1.53004 * 109.46919 * 90.00370 * 18 8 6 20 20 N 1.46906 * 109.47095 * 180.02562 * 19 18 8 21 21 C 1.47024 * 110.99299 * 293.63068 * 20 19 18 22 22 C 1.53100 * 109.25113 * 177.61008 * 21 20 19 23 23 O 1.43009 * 109.26185 * 56.84935 * 22 21 20 24 24 C 1.43019 * 113.73707 * 301.32872 * 23 22 21 25 25 C 1.47012 * 111.00177 * 169.99922 * 20 19 18 26 26 H 1.08998 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47357 * 300.00324 * 1 2 3 28 28 H 1.09007 * 109.47116 * 60.00239 * 1 2 3 29 29 H 1.08994 * 109.47078 * 240.00147 * 2 1 3 30 30 H 1.08997 * 109.47023 * 119.99632 * 2 1 3 31 31 H 1.08994 * 109.47443 * 59.99728 * 3 2 1 32 32 H 1.09007 * 109.47104 * 299.99768 * 3 2 1 33 33 H 1.07997 * 119.99651 * 315.67421 * 4 3 2 34 34 H 1.07997 * 120.00019 * 195.23656 * 5 4 3 35 35 H 1.08994 * 109.47099 * 29.72374 * 9 8 6 36 36 H 1.08994 * 109.47198 * 149.72809 * 9 8 6 37 37 H 0.97002 * 119.99771 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47373 * 209.99733 * 18 8 6 39 39 H 1.08994 * 109.47410 * 330.00230 * 18 8 6 40 40 H 1.09003 * 109.47167 * 299.99370 * 19 18 8 41 41 H 1.08995 * 109.47701 * 59.99617 * 19 18 8 42 42 H 1.08995 * 109.50258 * 297.53907 * 21 20 19 43 43 H 1.08998 * 109.50605 * 57.67569 * 21 20 19 44 44 H 1.09001 * 109.50321 * 296.90847 * 22 21 20 45 45 H 1.09002 * 109.53363 * 176.80567 * 22 21 20 46 46 H 1.09000 * 109.50394 * 298.73406 * 24 23 22 47 47 H 1.09001 * 109.54298 * 178.62953 * 24 23 22 48 48 H 1.08997 * 109.50560 * 302.32263 * 25 20 19 49 49 H 1.08996 * 109.50542 * 62.40539 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2123 2.2664 -0.8040 6 6 3.5158 3.3954 -1.4395 7 8 2.3663 3.6502 -1.1349 8 7 4.1516 4.1477 -2.3595 9 6 5.5343 3.8372 -2.7310 10 6 6.4779 4.5967 -1.8345 11 1 6.0868 5.2455 -1.0647 12 6 7.8405 4.4626 -1.9963 13 7 8.3168 3.6722 -2.9334 14 14 9.0102 5.4036 -0.8846 15 1 9.3223 4.5832 0.3132 16 1 10.2646 5.6990 -1.6226 17 1 8.3739 6.6766 -0.4608 18 6 3.4581 5.2725 -2.9921 19 6 3.6883 6.5416 -2.1689 20 7 2.9924 7.6694 -2.8029 21 6 3.5913 7.9924 -4.1062 22 6 2.8007 9.1306 -4.7568 23 8 2.7827 10.2566 -3.8753 24 6 2.2055 9.9776 -2.5968 25 6 2.9900 8.8481 -1.9242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 4.0867 0.7736 0.6545 34 1 5.2639 2.1063 -0.9908 35 1 5.7090 2.7672 -2.6192 36 1 5.7058 4.1270 -3.7677 37 1 9.2755 3.5776 -3.0470 38 1 3.8461 5.4181 -4.0002 39 1 2.3902 5.0599 -3.0410 40 1 3.3002 6.3961 -1.1608 41 1 4.7562 6.7542 -2.1200 42 1 4.6263 8.3030 -3.9641 43 1 3.5594 7.1130 -4.7494 44 1 1.7792 8.8014 -4.9479 45 1 3.2743 9.4122 -5.6974 46 1 1.1668 9.6732 -2.7250 47 1 2.2486 10.8714 -1.9745 48 1 2.5194 8.5933 -0.9747 49 1 4.0156 9.1718 -1.7468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729352447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:39 Heat of formation + Delta-G solvation = -63.100115 kcal Electronic energy + Delta-G solvation = -26651.140081 eV Core-core repulsion = 22999.661407 eV Total energy + Delta-G solvation = -3651.478674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.61922 -39.11230 -36.34073 -35.32869 -34.61975 -32.63890 -31.98504 -31.15869 -29.71402 -27.31294 -26.88828 -25.57433 -23.95567 -23.12963 -22.40348 -21.24300 -20.49410 -20.11399 -17.67858 -16.87333 -16.49770 -16.20360 -16.08813 -15.36216 -15.10446 -15.01666 -14.86219 -14.59247 -14.41401 -13.97003 -13.74369 -13.48767 -12.95700 -12.90792 -12.67019 -12.40982 -12.33010 -12.17054 -11.88440 -11.70290 -11.50013 -11.33433 -11.23501 -11.13472 -11.08983 -10.88602 -10.69537 -10.60972 -10.44862 -10.32777 -9.98219 -9.79501 -9.60629 -8.90037 -8.66546 -8.55986 -8.19937 -7.69748 -6.22546 -4.29583 1.95612 3.18656 3.26308 3.28915 3.65554 3.87847 4.04586 4.22220 4.34209 4.93595 5.08328 5.09407 5.10801 5.11468 5.20150 5.20538 5.30275 5.34014 5.39437 5.54214 5.60377 5.66434 5.75380 5.77208 5.85524 5.86690 5.93061 5.97342 5.98733 6.03516 6.09045 6.13116 6.24711 6.33259 6.42314 6.50750 6.60477 6.77282 6.91700 7.07234 7.08537 7.16629 7.17013 7.19278 7.55573 7.72489 8.01619 8.32682 8.75996 9.02709 9.38358 10.84019 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.004921 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.872814 B = 5688.424010 C = 8497.692800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.092 4.092 5 C -0.195 4.195 6 C 0.545 3.455 7 O -0.567 6.567 8 N -0.592 5.592 9 C 0.237 3.763 10 C -0.534 4.534 11 H 0.060 0.940 12 C 0.066 3.934 13 N -0.891 5.891 14 Si 0.894 3.106 15 H -0.278 1.278 16 H -0.285 1.285 17 H -0.275 1.275 18 C 0.131 3.869 19 C 0.043 3.957 20 N -0.535 5.535 21 C 0.013 3.987 22 C 0.065 3.935 23 O -0.389 6.389 24 C 0.066 3.934 25 C 0.018 3.982 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.054 0.946 29 H 0.058 0.942 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.139 0.861 35 H 0.041 0.959 36 H 0.034 0.966 37 H 0.265 0.735 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.055 0.945 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.095 0.905 46 H 0.058 0.942 47 H 0.094 0.906 48 H 0.084 0.916 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.763 2.222 0.591 11.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.145 4.145 4 C -0.112 4.112 5 C -0.216 4.216 6 C 0.336 3.664 7 O -0.450 6.450 8 N -0.322 5.322 9 C 0.117 3.883 10 C -0.573 4.573 11 H 0.078 0.922 12 C -0.137 4.137 13 N -0.529 5.529 14 Si 0.721 3.279 15 H -0.204 1.204 16 H -0.211 1.211 17 H -0.200 1.200 18 C 0.007 3.993 19 C -0.085 4.085 20 N -0.261 5.261 21 C -0.115 4.115 22 C -0.012 4.012 23 O -0.308 6.308 24 C -0.011 4.011 25 C -0.110 4.110 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.088 0.912 32 H 0.123 0.877 33 H 0.133 0.867 34 H 0.157 0.843 35 H 0.059 0.941 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.113 0.887 46 H 0.076 0.924 47 H 0.112 0.888 48 H 0.102 0.898 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -11.557 2.342 0.487 11.802 hybrid contribution 1.969 0.413 0.904 2.206 sum -9.588 2.755 1.392 10.073 Atomic orbital electron populations 1.21744 0.96077 1.00926 1.01930 1.21541 0.95618 0.97332 1.01457 1.21189 0.92325 0.95848 1.05184 1.23567 0.96302 0.96594 0.94710 1.22962 1.02045 0.96340 1.00209 1.18580 0.85350 0.83500 0.78956 1.90608 1.17992 1.72401 1.64039 1.48130 1.15987 1.28609 1.39431 1.19480 0.75060 0.97319 0.96418 1.21492 0.90805 1.27558 1.17428 0.92156 1.24925 0.98174 0.95263 0.95378 1.69918 1.13702 1.37267 1.32040 0.86559 0.80351 0.80307 0.80646 1.20423 1.21058 1.19953 1.21128 0.97741 0.85186 0.95249 1.22550 0.97656 0.89914 0.98396 1.62202 1.54638 1.05832 1.03421 1.22848 0.97208 0.99277 0.92206 1.22673 1.00003 0.85857 0.92659 1.87950 1.82621 1.35065 1.25156 1.22639 0.96454 0.97523 0.84496 1.22739 1.00023 0.91236 0.97033 0.93235 0.92903 0.92661 0.92276 0.92617 0.91250 0.87698 0.86673 0.84318 0.94114 0.94779 0.92511 0.91360 0.90410 0.90864 0.92702 0.93604 0.89275 0.92413 0.88654 0.92390 0.88788 0.89797 0.93966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.91 37.16 0.37 -1.28 16 2 C -0.12 -1.50 5.92 -26.73 -0.16 -1.65 16 3 C -0.11 -1.65 4.55 -27.88 -0.13 -1.78 16 4 C -0.09 -1.46 9.56 -36.12 -0.35 -1.81 16 5 C -0.20 -3.68 9.11 -37.81 -0.34 -4.02 16 6 C 0.54 11.26 7.39 -12.66 -0.09 11.16 16 7 O -0.57 -12.18 12.97 5.27 0.07 -12.12 16 8 N -0.59 -12.26 2.46 -176.46 -0.43 -12.69 16 9 C 0.24 5.49 4.88 -5.19 -0.03 5.47 16 10 C -0.53 -13.50 8.93 -34.44 -0.31 -13.81 16 11 H 0.06 1.57 7.42 -52.48 -0.39 1.18 16 12 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 13 N -0.89 -24.10 13.29 55.43 0.74 -23.37 16 14 Si 0.89 20.41 29.54 -169.99 -5.02 15.39 16 15 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 18 C 0.13 2.42 5.39 -4.04 -0.02 2.39 16 19 C 0.04 0.77 5.28 -3.82 -0.02 0.75 16 20 N -0.54 -8.24 4.73 -234.30 -1.11 -9.35 16 21 C 0.01 0.18 5.44 -3.70 -0.02 0.16 16 22 C 0.07 0.79 7.01 37.21 0.26 1.05 16 23 O -0.39 -5.33 10.83 -35.23 -0.38 -5.71 16 24 C 0.07 0.79 7.01 37.20 0.26 1.05 16 25 C 0.02 0.25 5.64 -3.72 -0.02 0.23 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 1.86 5.34 -51.93 -0.28 1.59 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.14 2.76 6.36 -52.49 -0.33 2.43 16 35 H 0.04 0.98 6.19 -51.93 -0.32 0.66 16 36 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 37 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 38 H 0.07 1.19 6.27 -51.93 -0.33 0.86 16 39 H 0.08 1.45 7.42 -51.93 -0.39 1.06 16 40 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 41 H 0.05 1.11 7.25 -51.93 -0.38 0.73 16 42 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.09 1.20 6.38 -51.93 -0.33 0.87 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.10 0.98 8.14 -51.93 -0.42 0.55 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.08 1.09 8.09 -51.93 -0.42 0.67 16 49 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 387.30 15.07 5.84 5.84 Total: -1.00 -28.10 387.30 -9.61 -37.71 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -8.62 Total: 4.78 kcal Atomic # 6 Polarization: 0.21 SS G_CDS: -0.69 Total: -0.48 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.80 Total: -45.41 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.31 Total: -17.83 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -28.10 -9.61 -37.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.391 kcal (2) G-P(sol) polarization free energy of solvation -28.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds