Wall clock time and date at job start Fri Apr 10 2020 22:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46774 * 2 1 4 4 C 1.50703 * 109.47005 * 179.97438 * 3 2 1 5 5 C 1.32994 * 120.00345 * 135.66987 * 4 3 2 6 6 C 1.47100 * 119.99440 * 15.23605 * 5 4 3 7 7 O 1.21612 * 120.00772 * 6.81308 * 6 5 4 8 8 N 1.34778 * 119.99637 * 186.80955 * 6 5 4 9 9 C 1.46504 * 120.00129 * 0.27699 * 8 6 5 10 10 C 1.50698 * 109.46977 * 269.72274 * 9 8 6 11 11 H 1.08007 * 120.00442 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99920 * 0.02562 * 12 10 9 14 14 Si 1.86806 * 120.00064 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47417 * 90.00334 * 14 12 10 16 16 H 1.48506 * 109.47128 * 210.00180 * 14 12 10 17 17 H 1.48496 * 109.47022 * 329.99676 * 14 12 10 18 18 C 1.46504 * 119.99920 * 180.02562 * 8 6 5 19 19 C 1.53004 * 109.46919 * 90.00370 * 18 8 6 20 20 N 1.46906 * 109.47095 * 180.02562 * 19 18 8 21 21 C 1.47024 * 110.99299 * 293.63068 * 20 19 18 22 22 C 1.53100 * 109.25113 * 177.61008 * 21 20 19 23 23 O 1.43009 * 109.26185 * 56.84935 * 22 21 20 24 24 C 1.43019 * 113.73707 * 301.32872 * 23 22 21 25 25 C 1.47012 * 111.00177 * 169.99922 * 20 19 18 26 26 H 1.08998 * 109.46944 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47357 * 300.00324 * 1 2 3 28 28 H 1.09007 * 109.47116 * 60.00239 * 1 2 3 29 29 H 1.08994 * 109.47078 * 240.00147 * 2 1 3 30 30 H 1.08997 * 109.47023 * 119.99632 * 2 1 3 31 31 H 1.08994 * 109.47443 * 59.99728 * 3 2 1 32 32 H 1.09007 * 109.47104 * 299.99768 * 3 2 1 33 33 H 1.07997 * 119.99651 * 315.67421 * 4 3 2 34 34 H 1.07997 * 120.00019 * 195.23656 * 5 4 3 35 35 H 1.08994 * 109.47099 * 29.72374 * 9 8 6 36 36 H 1.08994 * 109.47198 * 149.72809 * 9 8 6 37 37 H 0.97002 * 119.99771 * 180.02562 * 13 12 10 38 38 H 1.09002 * 109.47373 * 209.99733 * 18 8 6 39 39 H 1.08994 * 109.47410 * 330.00230 * 18 8 6 40 40 H 1.09003 * 109.47167 * 299.99370 * 19 18 8 41 41 H 1.08995 * 109.47701 * 59.99617 * 19 18 8 42 42 H 1.08995 * 109.50258 * 297.53907 * 21 20 19 43 43 H 1.08998 * 109.50605 * 57.67569 * 21 20 19 44 44 H 1.09001 * 109.50321 * 296.90847 * 22 21 20 45 45 H 1.09002 * 109.53363 * 176.80567 * 22 21 20 46 46 H 1.09000 * 109.50394 * 298.73406 * 24 23 22 47 47 H 1.09001 * 109.54298 * 178.62953 * 24 23 22 48 48 H 1.08997 * 109.50560 * 302.32263 * 25 20 19 49 49 H 1.08996 * 109.50542 * 62.40539 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 6 4.2123 2.2664 -0.8040 6 6 3.5158 3.3954 -1.4395 7 8 2.3663 3.6502 -1.1349 8 7 4.1516 4.1477 -2.3595 9 6 5.5343 3.8372 -2.7310 10 6 6.4779 4.5967 -1.8345 11 1 6.0868 5.2455 -1.0647 12 6 7.8405 4.4626 -1.9963 13 7 8.3168 3.6722 -2.9334 14 14 9.0102 5.4036 -0.8846 15 1 9.3223 4.5832 0.3132 16 1 10.2646 5.6990 -1.6226 17 1 8.3739 6.6766 -0.4608 18 6 3.4581 5.2725 -2.9921 19 6 3.6883 6.5416 -2.1689 20 7 2.9924 7.6694 -2.8029 21 6 3.5913 7.9924 -4.1062 22 6 2.8007 9.1306 -4.7568 23 8 2.7827 10.2566 -3.8753 24 6 2.2055 9.9776 -2.5968 25 6 2.9900 8.8481 -1.9242 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8901 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6766 1.9564 0.8899 32 1 1.6766 1.9564 -0.8901 33 1 4.0867 0.7736 0.6545 34 1 5.2639 2.1063 -0.9908 35 1 5.7090 2.7672 -2.6192 36 1 5.7058 4.1270 -3.7677 37 1 9.2755 3.5776 -3.0470 38 1 3.8461 5.4181 -4.0002 39 1 2.3902 5.0599 -3.0410 40 1 3.3002 6.3961 -1.1608 41 1 4.7562 6.7542 -2.1200 42 1 4.6263 8.3030 -3.9641 43 1 3.5594 7.1130 -4.7494 44 1 1.7792 8.8014 -4.9479 45 1 3.2743 9.4122 -5.6974 46 1 1.1668 9.6732 -2.7250 47 1 2.2486 10.8714 -1.9745 48 1 2.5194 8.5933 -0.9747 49 1 4.0156 9.1718 -1.7468 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729352447.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:38 Heat of formation + Delta-G solvation = -79.348294 kcal Electronic energy + Delta-G solvation = -26651.844655 eV Core-core repulsion = 22999.661407 eV Total energy + Delta-G solvation = -3652.183248 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.05314 -40.40074 -37.72024 -36.55397 -36.17781 -34.53266 -33.25530 -32.21924 -31.13496 -29.13947 -28.10635 -26.84939 -25.09750 -24.90119 -23.82716 -22.34087 -21.82446 -21.34966 -19.30675 -18.66792 -18.10874 -17.53789 -17.18068 -16.80732 -16.39392 -16.32090 -16.16107 -15.98019 -15.81783 -15.27263 -15.03775 -14.82930 -14.38585 -14.18408 -14.12847 -13.91329 -13.74663 -13.50271 -13.32727 -13.15778 -12.89823 -12.86742 -12.67131 -12.53265 -12.34172 -12.21533 -12.17917 -11.86138 -11.73892 -11.67906 -11.49647 -11.43533 -10.72269 -10.66722 -10.37016 -10.09042 -9.53415 -9.37221 -8.22542 -6.35733 0.51483 1.36206 1.38871 1.46915 2.16560 2.38290 2.47339 2.84200 2.98531 3.07702 3.75814 3.87083 3.94256 4.00107 4.02439 4.12754 4.18535 4.21500 4.28408 4.32229 4.40774 4.47152 4.56884 4.62622 4.64826 4.69622 4.78804 4.80708 4.80982 4.84010 4.88475 4.98944 5.01067 5.02596 5.09714 5.16766 5.25209 5.33510 5.47875 5.55990 5.64204 5.76018 5.77279 5.90612 5.94579 6.04324 6.15104 6.56639 6.81014 7.30856 7.42573 8.82988 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.007870 B = 0.004921 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3556.872814 B = 5688.424010 C = 8497.692800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.109 4.109 4 C -0.056 4.056 5 C -0.233 4.233 6 C 0.540 3.460 7 O -0.580 6.580 8 N -0.598 5.598 9 C 0.254 3.746 10 C -0.536 4.536 11 H 0.049 0.951 12 C 0.024 3.976 13 N -0.918 5.918 14 Si 0.950 3.050 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.277 1.277 18 C 0.134 3.866 19 C 0.061 3.939 20 N -0.535 5.535 21 C 0.011 3.989 22 C 0.069 3.931 23 O -0.404 6.404 24 C 0.069 3.931 25 C 0.015 3.985 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.044 0.956 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.124 0.876 35 H 0.032 0.968 36 H 0.019 0.981 37 H 0.268 0.732 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.026 0.974 42 H 0.027 0.973 43 H 0.093 0.907 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.068 0.932 47 H 0.118 0.882 48 H 0.090 0.910 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.688 2.138 1.428 11.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.154 4.154 3 C -0.145 4.145 4 C -0.076 4.076 5 C -0.254 4.254 6 C 0.333 3.667 7 O -0.464 6.464 8 N -0.327 5.327 9 C 0.133 3.867 10 C -0.575 4.575 11 H 0.067 0.933 12 C -0.176 4.176 13 N -0.558 5.558 14 Si 0.776 3.224 15 H -0.197 1.197 16 H -0.206 1.206 17 H -0.202 1.202 18 C 0.010 3.990 19 C -0.068 4.068 20 N -0.260 5.260 21 C -0.117 4.117 22 C -0.008 4.008 23 O -0.322 6.322 24 C -0.007 4.007 25 C -0.113 4.113 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.166 0.834 34 H 0.142 0.858 35 H 0.050 0.950 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.111 0.889 44 H 0.087 0.913 45 H 0.134 0.866 46 H 0.086 0.914 47 H 0.136 0.864 48 H 0.108 0.892 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -12.498 2.267 1.323 12.771 hybrid contribution 2.169 0.394 0.683 2.308 sum -10.329 2.661 2.006 10.853 Atomic orbital electron populations 1.21742 0.95123 1.02112 1.01646 1.21509 0.96457 0.95015 1.02426 1.21165 0.91643 0.97876 1.03858 1.23991 0.96902 0.94516 0.92176 1.22785 1.01516 0.97880 1.03216 1.18909 0.85285 0.83843 0.78670 1.90600 1.18391 1.72917 1.64514 1.48104 1.15206 1.29469 1.39944 1.19109 0.76107 0.96378 0.95083 1.21606 0.91404 1.27231 1.17248 0.93291 1.25564 0.99502 0.96009 0.96522 1.69999 1.14084 1.38413 1.33284 0.85683 0.78533 0.79009 0.79216 1.19749 1.20571 1.20192 1.21175 0.97436 0.84777 0.95598 1.22232 0.95909 0.90917 0.97743 1.62242 1.53839 1.05864 1.04085 1.22932 0.96598 1.00445 0.91718 1.22763 1.00429 0.84672 0.92918 1.87937 1.82861 1.35646 1.25805 1.22753 0.96283 0.97622 0.84072 1.22861 0.99772 0.91256 0.97457 0.91316 0.92525 0.93685 0.92301 0.90603 0.91026 0.90399 0.83424 0.85794 0.95034 0.96283 0.92329 0.90575 0.90373 0.92451 0.95559 0.95457 0.88908 0.91260 0.86570 0.91391 0.86405 0.89171 0.95352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.91 71.98 0.71 -2.25 16 2 C -0.12 -2.58 5.92 30.60 0.18 -2.40 16 3 C -0.11 -3.16 4.55 29.85 0.14 -3.02 16 4 C -0.06 -1.72 9.56 24.52 0.23 -1.48 16 5 C -0.23 -8.90 9.11 23.43 0.21 -8.69 16 6 C 0.54 22.90 7.39 86.57 0.64 23.54 16 7 O -0.58 -25.35 12.97 -4.07 -0.05 -25.40 16 8 N -0.60 -25.66 2.46 -830.44 -2.04 -27.69 16 9 C 0.25 12.21 4.88 85.63 0.42 12.63 16 10 C -0.54 -27.84 8.93 25.60 0.23 -27.61 16 11 H 0.05 2.62 7.42 -2.91 -0.02 2.60 16 12 C 0.02 1.28 5.46 84.65 0.46 1.74 16 13 N -0.92 -50.32 13.29 21.45 0.28 -50.04 16 14 Si 0.95 42.12 29.54 68.60 2.03 44.15 16 15 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 17 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 18 C 0.13 5.08 5.39 86.38 0.47 5.54 16 19 C 0.06 2.27 5.28 86.30 0.46 2.73 16 20 N -0.53 -16.55 4.73 -895.20 -4.23 -20.78 16 21 C 0.01 0.32 5.44 86.31 0.47 0.79 16 22 C 0.07 1.57 7.01 72.02 0.50 2.08 16 23 O -0.40 -10.37 10.83 -148.98 -1.61 -11.99 16 24 C 0.07 1.54 7.01 72.01 0.50 2.04 16 25 C 0.01 0.40 5.64 86.31 0.49 0.89 16 26 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 27 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.04 0.97 8.14 -2.38 -0.02 0.96 16 29 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.08 2.76 5.34 -2.38 -0.01 2.75 16 33 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 34 H 0.12 5.09 6.36 -2.91 -0.02 5.07 16 35 H 0.03 1.58 6.19 -2.39 -0.01 1.56 16 36 H 0.02 0.97 7.89 -2.39 -0.02 0.95 16 37 H 0.27 13.92 8.31 -92.71 -0.77 13.15 16 38 H 0.08 2.73 6.27 -2.39 -0.01 2.72 16 39 H 0.08 2.97 7.42 -2.39 -0.02 2.95 16 40 H 0.06 2.29 8.04 -2.39 -0.02 2.27 16 41 H 0.03 1.12 7.25 -2.39 -0.02 1.10 16 42 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.09 2.50 6.38 -2.39 -0.02 2.49 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.12 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.09 2.31 8.09 -2.39 -0.02 2.29 16 49 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -60.80 387.30 1.39 -59.41 By element: Atomic # 1 Polarization: 24.91 SS G_CDS: 0.90 Total: 25.81 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: 6.11 Total: 6.54 kcal Atomic # 7 Polarization: -92.53 SS G_CDS: -5.99 Total: -98.51 kcal Atomic # 8 Polarization: -35.72 SS G_CDS: -1.67 Total: -37.39 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -60.80 1.39 -59.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729352447.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.941 kcal (2) G-P(sol) polarization free energy of solvation -60.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds