Wall clock time and date at job start Fri Apr 10 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 N 1.46903 * 109.47285 * 239.99818 * 2 1 3 5 5 C 1.46901 * 110.99656 * 69.54177 * 4 2 1 6 6 C 1.50701 * 109.46803 * 195.73358 * 5 4 2 7 7 H 1.07997 * 120.00566 * 355.21054 * 6 5 4 8 8 C 1.37877 * 119.99700 * 175.20884 * 6 5 4 9 9 N 1.31514 * 120.00283 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00077 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46856 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47114 * 119.99862 * 10 8 6 13 13 H 1.48500 * 109.47348 * 240.00452 * 10 8 6 14 14 C 1.46896 * 111.00101 * 193.49975 * 4 2 1 15 15 N 1.46499 * 109.47123 * 81.04695 * 14 4 2 16 16 C 1.33874 * 122.76251 * 90.02630 * 15 14 4 17 17 O 1.21229 * 125.39610 * 359.97230 * 16 15 14 18 18 C 1.51318 * 109.20831 * 179.97438 * 16 15 14 19 19 C 1.54230 * 103.55322 * 359.97438 * 18 16 15 20 20 C 1.52998 * 110.60458 * 118.51572 * 19 18 16 21 21 C 1.52993 * 110.60817 * 241.32891 * 19 18 16 22 22 C 1.53002 * 109.47513 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47126 * 300.00346 * 21 19 18 24 24 C 1.33870 * 122.76135 * 269.72993 * 15 14 4 25 25 O 1.21230 * 125.39670 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47250 * 183.44643 * 1 2 3 27 27 H 1.09001 * 109.47076 * 303.44134 * 1 2 3 28 28 H 1.08995 * 109.47426 * 63.44024 * 1 2 3 29 29 H 1.09000 * 109.47183 * 119.99709 * 2 1 3 30 30 H 1.09000 * 109.46862 * 299.99906 * 3 2 1 31 31 H 1.08991 * 109.47421 * 59.99735 * 3 2 1 32 32 H 1.09001 * 109.47281 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47601 * 315.73685 * 5 4 2 34 34 H 1.08998 * 109.47068 * 75.73902 * 5 4 2 35 35 H 0.96999 * 120.00311 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46674 * 201.04672 * 14 4 2 37 37 H 1.08999 * 109.46829 * 321.04250 * 14 4 2 38 38 H 1.08994 * 110.60751 * 118.51213 * 18 16 15 39 39 H 1.08992 * 110.60460 * 241.32355 * 18 16 15 40 40 H 1.08997 * 109.47290 * 60.70334 * 20 19 18 41 41 H 1.09004 * 109.46845 * 180.70009 * 20 19 18 42 42 H 1.08996 * 109.47617 * 300.69731 * 20 19 18 43 43 H 1.09008 * 109.47103 * 59.99914 * 21 19 18 44 44 H 1.08995 * 109.46872 * 60.00152 * 22 21 19 45 45 H 1.09001 * 109.47268 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.46792 * 299.99641 * 22 21 19 47 47 H 1.09008 * 109.46777 * 299.99768 * 23 21 19 48 48 H 1.08996 * 109.47221 * 59.99438 * 23 21 19 49 49 H 1.08995 * 109.47472 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.7432 0.0922 -2.4101 6 6 1.8954 -0.7873 -3.6244 7 1 2.2448 -1.8033 -3.5149 8 6 1.5886 -0.2947 -4.8751 9 7 1.1636 0.9427 -5.0085 10 14 1.7767 -1.3850 -6.3802 11 1 2.2670 -2.7234 -5.9637 12 1 0.4617 -1.5281 -7.0552 13 1 2.7503 -0.7705 -7.3181 14 6 3.4524 -0.9957 -1.0842 15 7 3.6321 -2.2070 -0.2800 16 6 3.6636 -3.4337 -0.8151 17 8 3.5505 -3.6883 -1.9949 18 6 3.8628 -4.4522 0.2862 19 6 3.9424 -3.5921 1.5639 20 6 2.8071 -3.9496 2.5252 21 6 5.2998 -3.7674 2.2474 22 6 5.3509 -2.9037 3.5093 23 6 5.4940 -5.2369 2.6263 24 6 3.7841 -2.1777 1.0497 25 8 3.7922 -1.1769 1.7337 26 1 -0.3633 -1.0258 0.0618 27 1 -0.3633 0.5663 0.8575 28 1 -0.3634 0.4595 -0.9192 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 0.7253 0.4797 -2.3674 34 1 2.4459 0.9230 -2.4729 35 1 0.9482 1.2893 -5.8884 36 1 3.8713 -1.1538 -2.0780 37 1 3.9627 -0.1612 -0.6034 38 1 3.0146 -5.1350 0.3352 39 1 4.7901 -5.0045 0.1348 40 1 2.8903 -4.9979 2.8119 41 1 2.8735 -3.3232 3.4148 42 1 1.8486 -3.7822 2.0339 43 1 6.0926 -3.4603 1.5651 44 1 4.5583 -3.2104 4.1917 45 1 6.3182 -3.0283 3.9960 46 1 5.2129 -1.8569 3.2389 47 1 4.7013 -5.5440 3.3086 48 1 5.4578 -5.8519 1.7271 49 1 6.4613 -5.3620 3.1129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:41 Heat of formation + Delta-G solvation = -67.011408 kcal Electronic energy + Delta-G solvation = -28331.202772 eV Core-core repulsion = 24679.554491 eV Total energy + Delta-G solvation = -3651.648280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.99497 -38.42965 -37.93614 -36.73669 -35.16984 -32.75982 -32.02479 -30.47165 -28.59649 -27.55465 -26.82296 -26.46811 -25.18536 -24.29825 -22.56604 -22.14662 -20.25247 -18.85072 -18.51568 -16.97029 -16.75647 -16.33488 -16.17880 -15.20615 -14.93417 -14.84086 -14.57001 -14.23433 -14.16216 -13.78984 -13.61113 -13.24058 -13.06163 -13.01042 -12.57996 -12.49139 -12.34095 -12.27825 -12.05213 -11.89410 -11.70449 -11.67306 -11.40803 -11.16168 -11.00060 -10.97210 -10.82437 -10.73071 -10.58538 -10.51890 -10.25949 -10.03670 -9.76009 -9.56818 -9.35763 -9.06148 -8.39549 -7.36643 -5.98775 -3.99096 1.79128 2.81295 3.04813 3.35947 3.43447 3.53666 4.00633 4.23272 4.32787 4.48340 4.49370 4.76044 4.88030 4.98111 5.06931 5.20121 5.34252 5.37441 5.41111 5.46441 5.48007 5.56766 5.58545 5.62860 5.68871 5.70426 5.74039 5.81920 5.89801 5.91072 6.02618 6.10537 6.12685 6.16460 6.24709 6.32918 6.39036 6.46713 6.78084 6.81715 7.09933 7.27887 7.31797 7.63276 7.88696 8.02077 8.09695 8.21699 8.53293 9.12592 9.65898 11.11689 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.004746 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.290948 B = 5897.858882 C = 6992.491863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 C -0.178 4.178 4 N -0.539 5.539 5 C 0.197 3.803 6 C -0.508 4.508 7 H 0.071 0.929 8 C 0.057 3.943 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.269 1.269 12 H -0.285 1.285 13 H -0.286 1.286 14 C 0.267 3.733 15 N -0.560 5.560 16 C 0.526 3.474 17 O -0.462 6.462 18 C -0.155 4.155 19 C -0.092 4.092 20 C -0.134 4.134 21 C -0.074 4.074 22 C -0.157 4.157 23 C -0.149 4.149 24 C 0.535 3.465 25 O -0.482 6.482 26 H 0.052 0.948 27 H 0.046 0.954 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.044 0.956 34 H -0.006 1.006 35 H 0.260 0.740 36 H 0.113 0.887 37 H 0.061 0.939 38 H 0.117 0.883 39 H 0.116 0.884 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.890 -9.992 17.650 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.039 4.039 3 C -0.236 4.236 4 N -0.264 5.264 5 C 0.073 3.927 6 C -0.547 4.547 7 H 0.089 0.911 8 C -0.144 4.144 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.193 1.193 12 H -0.211 1.211 13 H -0.212 1.212 14 C 0.057 3.943 15 N -0.303 5.303 16 C 0.313 3.687 17 O -0.331 6.331 18 C -0.194 4.194 19 C -0.096 4.096 20 C -0.192 4.192 21 C -0.093 4.093 22 C -0.214 4.214 23 C -0.206 4.206 24 C 0.323 3.677 25 O -0.354 6.354 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.012 0.988 35 H 0.069 0.931 36 H 0.131 0.869 37 H 0.079 0.921 38 H 0.135 0.865 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.082 0.918 43 H 0.092 0.908 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.092 0.908 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.504 -9.870 17.134 20.815 hybrid contribution 0.377 0.379 -0.938 1.079 sum 6.881 -9.491 16.196 19.993 Atomic orbital electron populations 1.21778 0.94912 1.01406 1.01402 1.21782 0.95695 0.92593 0.93854 1.22390 1.00773 0.98571 1.01899 1.62022 1.13034 1.47526 1.03840 1.19755 0.96989 0.91531 0.84457 1.21353 1.43534 0.99435 0.90355 0.91126 1.24945 0.95325 0.95048 0.99062 1.69966 1.45818 1.14771 1.23456 0.86489 0.77580 0.81152 0.82623 1.19331 1.21138 1.21214 1.22198 0.92030 0.83872 0.96200 1.46978 1.63218 1.10549 1.09528 1.20649 0.74757 0.83701 0.89607 1.90832 1.43835 1.82024 1.16407 1.22742 1.06423 0.98324 0.91945 1.21505 0.99191 0.92485 0.96370 1.21817 0.96068 1.02493 0.98772 1.20986 0.93718 0.96919 0.97668 1.22011 1.01534 1.01290 0.96583 1.21931 1.02074 0.94787 1.01821 1.20594 0.73873 0.91432 0.81755 1.90677 1.46656 1.37347 1.60744 0.92850 0.93494 0.91735 0.90902 0.91619 0.93221 0.93332 0.93852 0.98838 0.93086 0.86866 0.92119 0.86460 0.86557 0.90755 0.90829 0.91807 0.90823 0.92135 0.92723 0.90793 0.91957 0.92166 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 9.28 37.15 0.34 -2.12 16 2 C 0.07 1.32 2.86 -67.71 -0.19 1.12 16 3 C -0.18 -3.22 8.45 37.16 0.31 -2.91 16 4 N -0.54 -11.69 4.47 -231.97 -1.04 -12.73 16 5 C 0.20 5.05 3.31 -4.97 -0.02 5.04 16 6 C -0.51 -14.45 8.38 -34.44 -0.29 -14.74 16 7 H 0.07 2.08 7.61 -52.49 -0.40 1.68 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 10 Si 0.89 22.42 29.54 -169.99 -5.02 17.39 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 13 H -0.29 -7.06 7.11 56.52 0.40 -6.65 16 14 C 0.27 5.34 5.08 -63.32 -0.32 5.02 16 15 N -0.56 -9.44 2.77 -118.62 -0.33 -9.77 16 16 C 0.53 8.62 8.08 -11.08 -0.09 8.53 16 17 O -0.46 -9.63 17.48 5.60 0.10 -9.53 16 18 C -0.15 -1.63 5.77 -26.94 -0.16 -1.78 16 19 C -0.09 -0.95 0.49 -154.72 -0.08 -1.03 16 20 C -0.13 -1.18 7.73 37.16 0.29 -0.89 16 21 C -0.07 -0.63 2.16 -90.62 -0.20 -0.83 16 22 C -0.16 -1.39 8.55 37.16 0.32 -1.08 16 23 C -0.15 -0.93 8.67 37.16 0.32 -0.61 16 24 C 0.54 7.80 5.89 -11.09 -0.07 7.74 16 25 O -0.48 -7.88 13.67 5.60 0.08 -7.80 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 1.28 6.32 -51.93 -0.33 0.95 16 29 H 0.07 1.36 5.24 -51.93 -0.27 1.09 16 30 H 0.06 1.30 6.65 -51.93 -0.35 0.96 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.05 0.88 6.62 -51.93 -0.34 0.54 16 33 H 0.04 1.19 6.08 -51.93 -0.32 0.87 16 34 H -0.01 -0.17 7.14 -51.93 -0.37 -0.54 16 35 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.11 2.52 6.64 -51.93 -0.34 2.18 16 37 H 0.06 1.17 6.01 -51.93 -0.31 0.86 16 38 H 0.12 1.06 7.74 -51.93 -0.40 0.65 16 39 H 0.12 0.97 6.46 -51.93 -0.34 0.63 16 40 H 0.07 0.48 6.72 -51.93 -0.35 0.13 16 41 H 0.07 0.66 6.37 -51.93 -0.33 0.32 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 44 H 0.06 0.49 6.42 -51.93 -0.33 0.16 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.84 6.08 -51.93 -0.32 0.52 16 47 H 0.06 0.35 6.64 -51.92 -0.34 0.00 16 48 H 0.06 0.34 6.53 -51.93 -0.34 0.00 16 49 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 369.26 15.07 5.56 5.56 Total: -1.00 -32.39 369.26 -7.70 -40.09 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.88 Total: -0.19 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 0.09 Total: 3.01 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: -0.63 Total: -48.54 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: 0.17 Total: -17.34 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.39 -7.70 -40.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.921 kcal (2) G-P(sol) polarization free energy of solvation -32.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds