Wall clock time and date at job start Fri Apr 10 2020 22:28:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47107 * 2 1 4 4 N 1.46903 * 109.47285 * 239.99818 * 2 1 3 5 5 C 1.46901 * 110.99656 * 69.54177 * 4 2 1 6 6 C 1.50701 * 109.46803 * 195.73358 * 5 4 2 7 7 H 1.07997 * 120.00566 * 355.21054 * 6 5 4 8 8 C 1.37877 * 119.99700 * 175.20884 * 6 5 4 9 9 N 1.31514 * 120.00283 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 120.00077 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46856 * 0.02562 * 10 8 6 12 12 H 1.48498 * 109.47114 * 119.99862 * 10 8 6 13 13 H 1.48500 * 109.47348 * 240.00452 * 10 8 6 14 14 C 1.46896 * 111.00101 * 193.49975 * 4 2 1 15 15 N 1.46499 * 109.47123 * 81.04695 * 14 4 2 16 16 C 1.33874 * 122.76251 * 90.02630 * 15 14 4 17 17 O 1.21229 * 125.39610 * 359.97230 * 16 15 14 18 18 C 1.51318 * 109.20831 * 179.97438 * 16 15 14 19 19 C 1.54230 * 103.55322 * 359.97438 * 18 16 15 20 20 C 1.52998 * 110.60458 * 118.51572 * 19 18 16 21 21 C 1.52993 * 110.60817 * 241.32891 * 19 18 16 22 22 C 1.53002 * 109.47513 * 179.97438 * 21 19 18 23 23 C 1.52999 * 109.47126 * 300.00346 * 21 19 18 24 24 C 1.33870 * 122.76135 * 269.72993 * 15 14 4 25 25 O 1.21230 * 125.39670 * 359.97438 * 24 15 14 26 26 H 1.08997 * 109.47250 * 183.44643 * 1 2 3 27 27 H 1.09001 * 109.47076 * 303.44134 * 1 2 3 28 28 H 1.08995 * 109.47426 * 63.44024 * 1 2 3 29 29 H 1.09000 * 109.47183 * 119.99709 * 2 1 3 30 30 H 1.09000 * 109.46862 * 299.99906 * 3 2 1 31 31 H 1.08991 * 109.47421 * 59.99735 * 3 2 1 32 32 H 1.09001 * 109.47281 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47601 * 315.73685 * 5 4 2 34 34 H 1.08998 * 109.47068 * 75.73902 * 5 4 2 35 35 H 0.96999 * 120.00311 * 179.97438 * 9 8 6 36 36 H 1.09000 * 109.46674 * 201.04672 * 14 4 2 37 37 H 1.08999 * 109.46829 * 321.04250 * 14 4 2 38 38 H 1.08994 * 110.60751 * 118.51213 * 18 16 15 39 39 H 1.08992 * 110.60460 * 241.32355 * 18 16 15 40 40 H 1.08997 * 109.47290 * 60.70334 * 20 19 18 41 41 H 1.09004 * 109.46845 * 180.70009 * 20 19 18 42 42 H 1.08996 * 109.47617 * 300.69731 * 20 19 18 43 43 H 1.09008 * 109.47103 * 59.99914 * 21 19 18 44 44 H 1.08995 * 109.46872 * 60.00152 * 22 21 19 45 45 H 1.09001 * 109.47268 * 180.02562 * 22 21 19 46 46 H 1.08997 * 109.46792 * 299.99641 * 22 21 19 47 47 H 1.09008 * 109.46777 * 299.99768 * 23 21 19 48 48 H 1.08996 * 109.47221 * 59.99438 * 23 21 19 49 49 H 1.08995 * 109.47472 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.7432 0.0922 -2.4101 6 6 1.8954 -0.7873 -3.6244 7 1 2.2448 -1.8033 -3.5149 8 6 1.5886 -0.2947 -4.8751 9 7 1.1636 0.9427 -5.0085 10 14 1.7767 -1.3850 -6.3802 11 1 2.2670 -2.7234 -5.9637 12 1 0.4617 -1.5281 -7.0552 13 1 2.7503 -0.7705 -7.3181 14 6 3.4524 -0.9957 -1.0842 15 7 3.6321 -2.2070 -0.2800 16 6 3.6636 -3.4337 -0.8151 17 8 3.5505 -3.6883 -1.9949 18 6 3.8628 -4.4522 0.2862 19 6 3.9424 -3.5921 1.5639 20 6 2.8071 -3.9496 2.5252 21 6 5.2998 -3.7674 2.2474 22 6 5.3509 -2.9037 3.5093 23 6 5.4940 -5.2369 2.6263 24 6 3.7841 -2.1777 1.0497 25 8 3.7922 -1.1769 1.7337 26 1 -0.3633 -1.0258 0.0618 27 1 -0.3633 0.5663 0.8575 28 1 -0.3634 0.4595 -0.9192 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4426 -0.0005 33 1 0.7253 0.4797 -2.3674 34 1 2.4459 0.9230 -2.4729 35 1 0.9482 1.2893 -5.8884 36 1 3.8713 -1.1538 -2.0780 37 1 3.9627 -0.1612 -0.6034 38 1 3.0146 -5.1350 0.3352 39 1 4.7901 -5.0045 0.1348 40 1 2.8903 -4.9979 2.8119 41 1 2.8735 -3.3232 3.4148 42 1 1.8486 -3.7822 2.0339 43 1 6.0926 -3.4603 1.5651 44 1 4.5583 -3.2104 4.1917 45 1 6.3182 -3.0283 3.9960 46 1 5.2129 -1.8569 3.2389 47 1 4.7013 -5.5440 3.3086 48 1 5.4578 -5.8519 1.7271 49 1 6.4613 -5.3620 3.1129 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841459.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:41 Heat of formation + Delta-G solvation = -88.190749 kcal Electronic energy + Delta-G solvation = -28332.121177 eV Core-core repulsion = 24679.554491 eV Total energy + Delta-G solvation = -3652.566685 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.18281 -39.72375 -39.47731 -37.83234 -36.50297 -34.91771 -33.17717 -31.92458 -29.64697 -28.87285 -28.11207 -27.82005 -26.44852 -25.66520 -24.32996 -23.35504 -21.42404 -20.19726 -19.79512 -18.78781 -18.14807 -17.79693 -17.30659 -16.68807 -16.53505 -16.08130 -15.92496 -15.80108 -15.37493 -15.09605 -14.79793 -14.63364 -14.34308 -14.17706 -13.88719 -13.78828 -13.60858 -13.31988 -13.20584 -13.00972 -12.97427 -12.85282 -12.80970 -12.64033 -12.41413 -12.35227 -12.22038 -12.19171 -12.06781 -11.72936 -11.51627 -11.39226 -11.34457 -11.20925 -10.84970 -10.66762 -10.59969 -9.17404 -8.22123 -6.29891 0.56784 1.35116 1.36428 1.51041 1.53579 1.82013 2.38822 3.04576 3.06749 3.16508 3.29750 3.43969 3.68591 3.88396 3.98286 4.00725 4.16756 4.32578 4.33168 4.35762 4.41991 4.53799 4.53841 4.66281 4.67466 4.68583 4.80669 4.82847 4.90870 4.93407 4.93843 4.96190 5.05475 5.10281 5.16443 5.21270 5.25887 5.29434 5.30726 5.32912 5.56963 5.59271 5.66914 5.91827 6.05102 6.19031 6.43792 6.53991 6.79959 6.91100 7.39085 8.88220 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.016780 B = 0.004746 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.290948 B = 5897.858882 C = 6992.491863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.069 3.931 3 C -0.169 4.169 4 N -0.546 5.546 5 C 0.219 3.781 6 C -0.522 4.522 7 H 0.054 0.946 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.275 1.275 12 H -0.275 1.275 13 H -0.275 1.275 14 C 0.275 3.725 15 N -0.568 5.568 16 C 0.517 3.483 17 O -0.517 6.517 18 C -0.137 4.137 19 C -0.078 4.078 20 C -0.133 4.133 21 C -0.072 4.072 22 C -0.155 4.155 23 C -0.145 4.145 24 C 0.529 3.471 25 O -0.501 6.501 26 H 0.053 0.947 27 H 0.078 0.922 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.076 0.924 32 H 0.042 0.958 33 H 0.023 0.977 34 H -0.029 1.029 35 H 0.264 0.736 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.144 0.856 39 H 0.148 0.852 40 H 0.109 0.891 41 H 0.073 0.927 42 H 0.051 0.949 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.043 0.957 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 -12.480 19.789 24.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.039 4.039 3 C -0.228 4.228 4 N -0.271 5.271 5 C 0.094 3.906 6 C -0.560 4.560 7 H 0.072 0.928 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.784 3.216 11 H -0.200 1.200 12 H -0.200 1.200 13 H -0.201 1.201 14 C 0.063 3.937 15 N -0.311 5.311 16 C 0.307 3.693 17 O -0.391 6.391 18 C -0.176 4.176 19 C -0.082 4.082 20 C -0.190 4.190 21 C -0.091 4.091 22 C -0.212 4.212 23 C -0.202 4.202 24 C 0.319 3.681 25 O -0.374 6.374 26 H 0.072 0.928 27 H 0.097 0.903 28 H 0.058 0.942 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.041 0.959 34 H -0.011 1.011 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.162 0.838 39 H 0.165 0.835 40 H 0.128 0.872 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.094 0.906 48 H 0.089 0.911 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.882 -12.366 19.326 23.954 hybrid contribution 0.304 1.215 -1.515 1.965 sum 7.185 -11.151 17.812 22.209 Atomic orbital electron populations 1.21734 0.93892 1.01747 1.01489 1.21884 0.96495 0.92860 0.92701 1.22290 1.00367 0.98043 1.02061 1.61940 1.14280 1.47321 1.03593 1.19296 0.95023 0.90686 0.85645 1.21519 1.43603 0.98998 0.91875 0.92760 1.25716 0.94923 0.96336 1.01832 1.70058 1.46387 1.16103 1.24377 0.85499 0.78031 0.78929 0.79185 1.19998 1.20004 1.20078 1.21815 0.90859 0.85635 0.95401 1.47127 1.63618 1.09847 1.10488 1.21732 0.72966 0.84448 0.90117 1.90799 1.46462 1.82738 1.19063 1.22874 1.08993 0.96873 0.88823 1.21595 1.01242 0.88641 0.96678 1.21889 0.94484 1.04691 0.97968 1.21031 0.92009 0.98920 0.97103 1.21987 1.02735 0.99495 0.97032 1.21928 1.03145 0.92431 1.02711 1.21477 0.72704 0.93359 0.80556 1.90664 1.47247 1.38718 1.60811 0.92774 0.90293 0.94236 0.90006 0.93892 0.90462 0.93852 0.95892 1.01114 0.92677 0.90102 0.91977 0.83849 0.83481 0.87240 0.90819 0.92938 0.91589 0.91030 0.91428 0.93777 0.90614 0.91102 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 9.28 71.98 0.67 -4.01 16 2 C 0.07 2.64 2.86 44.91 0.13 2.77 16 3 C -0.17 -6.24 8.45 71.98 0.61 -5.63 16 4 N -0.55 -24.75 4.47 -887.83 -3.97 -28.72 16 5 C 0.22 11.89 3.31 85.56 0.28 12.17 16 6 C -0.52 -31.02 8.38 25.60 0.21 -30.81 16 7 H 0.05 3.37 7.61 -2.91 -0.02 3.34 16 8 C 0.01 0.61 5.46 84.65 0.46 1.07 16 9 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 10 Si 0.96 47.09 29.54 68.60 2.03 49.11 16 11 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 12 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 13 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 14 C 0.27 11.58 5.08 170.81 0.87 12.45 16 15 N -0.57 -19.51 2.77 -767.03 -2.12 -21.64 16 16 C 0.52 16.96 8.08 87.99 0.71 17.67 16 17 O -0.52 -22.31 17.48 -2.87 -0.05 -22.36 16 18 C -0.14 -2.49 5.77 30.46 0.18 -2.31 16 19 C -0.08 -1.41 0.49 -52.32 -0.03 -1.44 16 20 C -0.13 -1.86 7.73 71.98 0.56 -1.31 16 21 C -0.07 -1.00 2.16 -10.80 -0.02 -1.03 16 22 C -0.16 -2.38 8.55 71.98 0.62 -1.76 16 23 C -0.15 -1.12 8.67 71.98 0.62 -0.50 16 24 C 0.53 15.06 5.89 87.99 0.52 15.58 16 25 O -0.50 -16.23 13.67 -2.87 -0.04 -16.27 16 26 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 27 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 28 H 0.04 1.60 6.32 -2.39 -0.02 1.58 16 29 H 0.08 3.03 5.24 -2.39 -0.01 3.02 16 30 H 0.04 1.77 6.65 -2.39 -0.02 1.75 16 31 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 32 H 0.04 1.61 6.62 -2.39 -0.02 1.60 16 33 H 0.02 1.34 6.08 -2.39 -0.01 1.32 16 34 H -0.03 -1.66 7.14 -2.39 -0.02 -1.68 16 35 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 36 H 0.08 3.90 6.64 -2.39 -0.02 3.89 16 37 H 0.06 2.55 6.01 -2.39 -0.01 2.53 16 38 H 0.14 1.99 7.74 -2.39 -0.02 1.97 16 39 H 0.15 1.86 6.46 -2.39 -0.02 1.84 16 40 H 0.11 0.81 6.72 -2.39 -0.02 0.79 16 41 H 0.07 1.07 6.37 -2.38 -0.02 1.05 16 42 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 44 H 0.07 0.93 6.42 -2.39 -0.02 0.91 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.04 0.95 6.08 -2.39 -0.01 0.93 16 47 H 0.07 0.42 6.64 -2.38 -0.02 0.41 16 48 H 0.07 0.43 6.53 -2.39 -0.02 0.42 16 49 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 Total: -1.00 -74.63 369.26 3.45 -71.18 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: 0.94 Total: 12.19 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 6.38 Total: 12.91 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -5.81 Total: -106.76 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.09 Total: -38.63 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.11 kcal Total: -74.63 3.45 -71.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841459.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.015 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds