Wall clock time and date at job start Fri Apr 10 2020 22:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 N 1.46904 * 109.47228 * 120.00187 * 2 1 3 5 5 C 1.46907 * 110.99704 * 291.07418 * 4 2 1 6 6 C 1.50702 * 109.46781 * 163.32056 * 5 4 2 7 7 H 1.07998 * 120.00292 * 355.77428 * 6 5 4 8 8 C 1.37882 * 119.99434 * 175.77612 * 6 5 4 9 9 N 1.31506 * 120.00276 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99469 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47047 * 269.99900 * 10 8 6 12 12 H 1.48495 * 109.47331 * 29.99843 * 10 8 6 13 13 H 1.48504 * 109.47036 * 149.99845 * 10 8 6 14 14 C 1.46901 * 110.99980 * 167.12739 * 4 2 1 15 15 N 1.46505 * 109.46511 * 278.95007 * 14 4 2 16 16 C 1.33872 * 122.76153 * 90.03032 * 15 14 4 17 17 O 1.21228 * 125.40010 * 0.02562 * 16 15 14 18 18 C 1.51316 * 109.20337 * 179.97438 * 16 15 14 19 19 C 1.54226 * 103.56001 * 359.97438 * 18 16 15 20 20 C 1.52997 * 110.60542 * 241.48404 * 19 18 16 21 21 C 1.52998 * 110.60714 * 118.51543 * 19 18 16 22 22 C 1.52999 * 109.46764 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47347 * 300.00146 * 21 19 18 24 24 C 1.33880 * 122.75880 * 269.73085 * 15 14 4 25 25 O 1.21223 * 125.40050 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47034 * 305.45288 * 1 2 3 27 27 H 1.08997 * 109.47617 * 65.45722 * 1 2 3 28 28 H 1.09000 * 109.47114 * 185.45524 * 1 2 3 29 29 H 1.09002 * 109.47037 * 239.99703 * 2 1 3 30 30 H 1.08999 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47033 * 299.99987 * 3 2 1 32 32 H 1.09002 * 109.47395 * 59.99922 * 3 2 1 33 33 H 1.09002 * 109.46780 * 43.32130 * 5 4 2 34 34 H 1.08999 * 109.47267 * 283.31889 * 5 4 2 35 35 H 0.96999 * 120.00073 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47783 * 38.94765 * 14 4 2 37 37 H 1.08998 * 109.47198 * 158.95245 * 14 4 2 38 38 H 1.09003 * 110.60402 * 118.51810 * 18 16 15 39 39 H 1.08995 * 110.60745 * 241.32131 * 18 16 15 40 40 H 1.09004 * 109.47547 * 59.29424 * 20 19 18 41 41 H 1.08999 * 109.47244 * 179.29613 * 20 19 18 42 42 H 1.09002 * 109.47257 * 299.29568 * 20 19 18 43 43 H 1.09001 * 109.47133 * 60.00389 * 21 19 18 44 44 H 1.09002 * 109.47488 * 60.00199 * 22 21 19 45 45 H 1.09007 * 109.47192 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47645 * 300.00283 * 22 21 19 47 47 H 1.08997 * 109.46890 * 59.99803 * 23 21 19 48 48 H 1.08997 * 109.46933 * 180.02562 * 23 21 19 49 49 H 1.09004 * 109.46826 * 300.00555 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7302 0.0854 2.4115 6 6 1.8614 -0.8030 3.6218 7 1 2.0654 -1.8564 3.4989 8 6 1.7209 -0.2708 4.8860 9 7 1.4729 1.0120 5.0356 10 14 1.8828 -1.3721 6.3861 11 1 0.5507 -1.9246 6.7406 12 1 2.8164 -2.4865 6.0836 13 1 2.4098 -0.5805 7.5267 14 6 3.4556 -0.9825 1.0905 15 7 3.6502 -2.1892 0.2829 16 6 3.8040 -2.1542 -1.0465 17 8 3.8021 -1.1513 -1.7275 18 6 3.9818 -3.5649 -1.5643 19 6 3.9039 -4.4303 -0.2901 20 6 5.2133 -5.1922 -0.0759 21 6 2.7222 -5.3988 -0.3683 22 6 2.6699 -6.2435 0.9063 23 6 1.4213 -4.6059 -0.5091 24 6 3.6946 -3.4172 0.8143 25 8 3.5834 -3.6766 1.9932 26 1 -0.3633 0.5961 0.8371 27 1 -0.3634 0.4268 -0.9348 28 1 -0.3633 -1.0230 0.0977 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7148 0.4780 2.3573 34 1 2.4359 0.9124 2.4897 35 1 1.3744 1.3864 5.9250 36 1 3.9611 -0.1419 0.6152 37 1 3.8709 -1.1405 2.0858 38 1 3.1788 -3.8243 -2.2543 39 1 4.9523 -3.6766 -2.0476 40 1 6.0357 -4.4827 0.0165 41 1 5.1427 -5.7871 0.8347 42 1 5.3944 -5.8496 -0.9262 43 1 2.8446 -6.0524 -1.2320 44 1 2.5476 -5.5902 1.7704 45 1 1.8282 -6.9339 0.8505 46 1 3.5967 -6.8084 1.0063 47 1 1.4589 -4.0045 -1.4174 48 1 0.5794 -5.2960 -0.5644 49 1 1.2989 -3.9523 0.3546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739841460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:44 Heat of formation + Delta-G solvation = -67.444681 kcal Electronic energy + Delta-G solvation = -28781.047512 eV Core-core repulsion = 25129.380444 eV Total energy + Delta-G solvation = -3651.667068 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.02547 -38.59077 -37.67369 -36.49380 -35.13270 -32.76524 -32.03685 -30.59565 -29.00967 -27.18048 -26.59479 -26.40830 -24.97094 -24.05434 -22.46066 -22.21339 -20.61478 -18.99687 -18.34518 -16.94962 -16.80513 -16.17961 -15.90343 -15.18650 -14.90321 -14.63393 -14.46789 -14.42935 -14.00383 -13.88974 -13.54616 -13.44661 -13.09004 -12.60282 -12.50671 -12.33050 -12.24791 -12.13428 -12.00066 -11.87923 -11.85265 -11.64992 -11.24853 -11.09926 -11.01742 -10.86598 -10.80776 -10.67292 -10.59828 -10.46806 -10.26284 -10.01428 -9.79153 -9.48978 -9.35517 -9.10842 -8.39026 -7.36722 -5.98972 -3.99539 1.80552 2.82752 3.07301 3.36699 3.42353 3.50675 4.04665 4.24865 4.37861 4.47446 4.55957 4.84857 4.91133 5.02450 5.22961 5.35219 5.36015 5.37157 5.42518 5.49696 5.58139 5.61383 5.68803 5.70524 5.72571 5.82063 5.85984 5.92563 5.99964 6.03850 6.11165 6.11388 6.16329 6.33082 6.35386 6.39829 6.47023 6.47865 6.78029 6.81101 7.10969 7.30508 7.32404 7.63863 7.88967 8.01146 8.10392 8.22119 8.53498 9.12602 9.65605 11.11255 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.006160 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.322417 B = 4544.519880 C = 5883.474258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.069 3.931 3 C -0.178 4.178 4 N -0.538 5.538 5 C 0.198 3.802 6 C -0.507 4.507 7 H 0.070 0.930 8 C 0.057 3.943 9 N -0.901 5.901 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.271 1.271 13 H -0.289 1.289 14 C 0.268 3.732 15 N -0.559 5.559 16 C 0.527 3.473 17 O -0.492 6.492 18 C -0.155 4.155 19 C -0.095 4.095 20 C -0.134 4.134 21 C -0.069 4.069 22 C -0.159 4.159 23 C -0.161 4.161 24 C 0.538 3.462 25 O -0.454 6.454 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.056 0.944 29 H 0.073 0.927 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.065 0.935 33 H 0.037 0.963 34 H 0.000 1.000 35 H 0.260 0.740 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.061 0.939 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.848 -11.503 -14.560 19.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.039 4.039 3 C -0.237 4.237 4 N -0.263 5.263 5 C 0.073 3.927 6 C -0.546 4.546 7 H 0.088 0.912 8 C -0.144 4.144 9 N -0.540 5.540 10 Si 0.722 3.278 11 H -0.208 1.208 12 H -0.195 1.195 13 H -0.215 1.215 14 C 0.057 3.943 15 N -0.302 5.302 16 C 0.315 3.685 17 O -0.365 6.365 18 C -0.195 4.195 19 C -0.099 4.099 20 C -0.192 4.192 21 C -0.088 4.088 22 C -0.216 4.216 23 C -0.218 4.218 24 C 0.324 3.676 25 O -0.322 6.322 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.075 0.925 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.055 0.945 34 H 0.018 0.982 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.132 0.868 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.074 0.926 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.080 0.920 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.495 -11.373 -14.033 18.614 hybrid contribution 0.379 0.440 0.799 0.988 sum 4.875 -10.933 -13.233 17.844 Atomic orbital electron populations 1.21769 0.94922 1.02009 1.00685 1.21780 0.95641 0.92606 0.93909 1.22393 1.00826 0.98561 1.01871 1.62031 1.12640 1.47891 1.03775 1.19739 0.96688 0.91829 0.84440 1.21299 1.47665 0.95897 0.89745 0.91203 1.24950 0.95461 0.94946 0.99051 1.69956 1.49703 1.11558 1.22827 0.86547 0.78438 0.80665 0.82168 1.20757 1.19550 1.21483 1.22193 0.91949 0.83958 0.96177 1.46970 1.63094 1.10537 1.09594 1.20704 0.74015 0.91705 0.82039 1.90731 1.47342 1.37280 1.61127 1.22713 1.06297 0.91871 0.98584 1.21594 0.99221 0.95778 0.93286 1.21798 0.93727 1.00196 1.03439 1.20984 0.92554 0.95465 0.99757 1.22030 1.01466 1.00005 0.98124 1.22022 0.96544 1.00461 1.02743 1.20447 0.74522 0.83121 0.89476 1.90777 1.43622 1.81492 1.16326 0.92123 0.93557 0.92497 0.90910 0.93303 0.93239 0.91632 0.94500 0.98215 0.93036 0.92151 0.86824 0.86415 0.86726 0.92110 0.90591 0.91010 0.90006 0.90407 0.92645 0.92383 0.92695 0.91997 0.91294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 9.10 37.16 0.34 -2.07 16 2 C 0.07 1.31 2.87 -67.71 -0.19 1.11 16 3 C -0.18 -3.24 8.47 37.16 0.31 -2.92 16 4 N -0.54 -11.49 4.47 -231.96 -1.04 -12.53 16 5 C 0.20 5.02 3.30 -4.97 -0.02 5.00 16 6 C -0.51 -14.28 8.34 -34.44 -0.29 -14.56 16 7 H 0.07 2.03 7.81 -52.49 -0.41 1.62 16 8 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 9 N -0.90 -26.70 13.29 55.43 0.74 -25.96 16 10 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 11 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.38 16 13 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 14 C 0.27 5.33 5.10 -63.31 -0.32 5.01 16 15 N -0.56 -9.36 2.77 -118.61 -0.33 -9.69 16 16 C 0.53 7.76 7.35 -11.09 -0.08 7.68 16 17 O -0.49 -8.42 15.72 5.60 0.09 -8.34 16 18 C -0.15 -1.55 5.77 -26.94 -0.16 -1.70 16 19 C -0.10 -1.05 0.60 -154.72 -0.09 -1.15 16 20 C -0.13 -1.19 8.07 37.16 0.30 -0.89 16 21 C -0.07 -0.70 2.27 -90.62 -0.21 -0.91 16 22 C -0.16 -1.78 8.55 37.16 0.32 -1.46 16 23 C -0.16 -1.89 8.63 37.16 0.32 -1.57 16 24 C 0.54 8.67 5.16 -11.08 -0.06 8.61 16 25 O -0.45 -9.05 15.46 5.61 0.09 -8.96 16 26 H 0.06 1.16 6.60 -51.93 -0.34 0.81 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 1.36 5.24 -51.93 -0.27 1.09 16 30 H 0.05 0.89 6.59 -51.93 -0.34 0.55 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 1.30 6.67 -51.93 -0.35 0.95 16 33 H 0.04 1.00 6.16 -51.93 -0.32 0.68 16 34 H 0.00 0.00 7.19 -51.93 -0.37 -0.37 16 35 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 36 H 0.06 1.18 5.98 -51.93 -0.31 0.87 16 37 H 0.11 2.54 6.79 -51.93 -0.35 2.18 16 38 H 0.12 0.99 6.45 -51.93 -0.33 0.66 16 39 H 0.11 0.86 7.74 -51.93 -0.40 0.46 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.73 6.37 -51.93 -0.33 0.40 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.15 6.10 -51.93 -0.32 0.83 16 45 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.56 6.42 -51.93 -0.33 0.23 16 47 H 0.05 0.60 6.53 -51.93 -0.34 0.26 16 48 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.08 7.13 -51.93 -0.37 0.71 16 LS Contribution 370.82 15.07 5.59 5.59 Total: -1.00 -31.86 370.82 -7.82 -39.68 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -8.01 Total: 1.21 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 0.08 Total: 1.70 kcal Atomic # 7 Polarization: -47.55 SS G_CDS: -0.63 Total: -48.18 kcal Atomic # 8 Polarization: -17.47 SS G_CDS: 0.17 Total: -17.30 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.86 -7.82 -39.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.763 kcal (2) G-P(sol) polarization free energy of solvation -31.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds