Wall clock time and date at job start Fri Apr 10 2020 22:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47148 * 2 1 4 4 N 1.46904 * 109.47228 * 120.00187 * 2 1 3 5 5 C 1.46907 * 110.99704 * 291.07418 * 4 2 1 6 6 C 1.50702 * 109.46781 * 163.32056 * 5 4 2 7 7 H 1.07998 * 120.00292 * 355.77428 * 6 5 4 8 8 C 1.37882 * 119.99434 * 175.77612 * 6 5 4 9 9 N 1.31506 * 120.00276 * 359.97438 * 8 6 5 10 10 Si 1.86798 * 119.99469 * 179.97438 * 8 6 5 11 11 H 1.48504 * 109.47047 * 269.99900 * 10 8 6 12 12 H 1.48495 * 109.47331 * 29.99843 * 10 8 6 13 13 H 1.48504 * 109.47036 * 149.99845 * 10 8 6 14 14 C 1.46901 * 110.99980 * 167.12739 * 4 2 1 15 15 N 1.46505 * 109.46511 * 278.95007 * 14 4 2 16 16 C 1.33872 * 122.76153 * 90.03032 * 15 14 4 17 17 O 1.21228 * 125.40010 * 0.02562 * 16 15 14 18 18 C 1.51316 * 109.20337 * 179.97438 * 16 15 14 19 19 C 1.54226 * 103.56001 * 359.97438 * 18 16 15 20 20 C 1.52997 * 110.60542 * 241.48404 * 19 18 16 21 21 C 1.52998 * 110.60714 * 118.51543 * 19 18 16 22 22 C 1.52999 * 109.46764 * 179.97438 * 21 19 18 23 23 C 1.52998 * 109.47347 * 300.00146 * 21 19 18 24 24 C 1.33880 * 122.75880 * 269.73085 * 15 14 4 25 25 O 1.21223 * 125.40050 * 359.97438 * 24 15 14 26 26 H 1.09000 * 109.47034 * 305.45288 * 1 2 3 27 27 H 1.08997 * 109.47617 * 65.45722 * 1 2 3 28 28 H 1.09000 * 109.47114 * 185.45524 * 1 2 3 29 29 H 1.09002 * 109.47037 * 239.99703 * 2 1 3 30 30 H 1.08999 * 109.47054 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47033 * 299.99987 * 3 2 1 32 32 H 1.09002 * 109.47395 * 59.99922 * 3 2 1 33 33 H 1.09002 * 109.46780 * 43.32130 * 5 4 2 34 34 H 1.08999 * 109.47267 * 283.31889 * 5 4 2 35 35 H 0.96999 * 120.00073 * 180.02562 * 9 8 6 36 36 H 1.08994 * 109.47783 * 38.94765 * 14 4 2 37 37 H 1.08998 * 109.47198 * 158.95245 * 14 4 2 38 38 H 1.09003 * 110.60402 * 118.51810 * 18 16 15 39 39 H 1.08995 * 110.60745 * 241.32131 * 18 16 15 40 40 H 1.09004 * 109.47547 * 59.29424 * 20 19 18 41 41 H 1.08999 * 109.47244 * 179.29613 * 20 19 18 42 42 H 1.09002 * 109.47257 * 299.29568 * 20 19 18 43 43 H 1.09001 * 109.47133 * 60.00389 * 21 19 18 44 44 H 1.09002 * 109.47488 * 60.00199 * 22 21 19 45 45 H 1.09007 * 109.47192 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.47645 * 300.00283 * 22 21 19 47 47 H 1.08997 * 109.46890 * 59.99803 * 23 21 19 48 48 H 1.08997 * 109.46933 * 180.02562 * 23 21 19 49 49 H 1.09004 * 109.46826 * 300.00555 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 1.7302 0.0854 2.4115 6 6 1.8614 -0.8030 3.6218 7 1 2.0654 -1.8564 3.4989 8 6 1.7209 -0.2708 4.8860 9 7 1.4729 1.0120 5.0356 10 14 1.8828 -1.3721 6.3861 11 1 0.5507 -1.9246 6.7406 12 1 2.8164 -2.4865 6.0836 13 1 2.4098 -0.5805 7.5267 14 6 3.4556 -0.9825 1.0905 15 7 3.6502 -2.1892 0.2829 16 6 3.8040 -2.1542 -1.0465 17 8 3.8021 -1.1513 -1.7275 18 6 3.9818 -3.5649 -1.5643 19 6 3.9039 -4.4303 -0.2901 20 6 5.2133 -5.1922 -0.0759 21 6 2.7222 -5.3988 -0.3683 22 6 2.6699 -6.2435 0.9063 23 6 1.4213 -4.6059 -0.5091 24 6 3.6946 -3.4172 0.8143 25 8 3.5834 -3.6766 1.9932 26 1 -0.3633 0.5961 0.8371 27 1 -0.3634 0.4268 -0.9348 28 1 -0.3633 -1.0230 0.0977 29 1 1.8933 -0.5139 -0.8900 30 1 3.1299 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.6766 1.9564 0.8900 33 1 0.7148 0.4780 2.3573 34 1 2.4359 0.9124 2.4897 35 1 1.3744 1.3864 5.9250 36 1 3.9611 -0.1419 0.6152 37 1 3.8709 -1.1405 2.0858 38 1 3.1788 -3.8243 -2.2543 39 1 4.9523 -3.6766 -2.0476 40 1 6.0357 -4.4827 0.0165 41 1 5.1427 -5.7871 0.8347 42 1 5.3944 -5.8496 -0.9262 43 1 2.8446 -6.0524 -1.2320 44 1 2.5476 -5.5902 1.7704 45 1 1.8282 -6.9339 0.8505 46 1 3.5967 -6.8084 1.0063 47 1 1.4589 -4.0045 -1.4174 48 1 0.5794 -5.2960 -0.5644 49 1 1.2989 -3.9523 0.3546 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739841460.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:43 Heat of formation + Delta-G solvation = -88.552568 kcal Electronic energy + Delta-G solvation = -28781.962819 eV Core-core repulsion = 25129.380444 eV Total energy + Delta-G solvation = -3652.582375 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.20818 -39.89195 -39.23474 -37.65393 -36.43488 -34.93233 -33.16682 -32.09051 -30.07744 -28.89716 -28.10109 -27.46011 -26.49393 -25.24387 -24.34809 -23.29339 -21.76574 -20.51604 -19.60889 -18.79365 -18.11901 -17.77444 -17.15660 -16.69928 -16.45953 -16.06169 -15.80925 -15.60622 -15.40483 -15.08301 -14.90299 -14.63255 -14.34110 -14.24963 -14.12484 -13.82080 -13.33867 -13.26016 -13.13979 -13.08710 -12.98915 -12.88261 -12.82503 -12.65783 -12.64496 -12.39186 -12.20886 -12.17078 -12.04282 -11.71544 -11.55986 -11.47789 -11.36785 -11.16283 -10.80640 -10.69325 -10.57958 -9.16407 -8.22901 -6.30722 0.61012 1.34044 1.34426 1.47947 1.55456 1.87453 2.37004 3.06812 3.09600 3.17882 3.27297 3.47534 3.74355 3.89757 3.97343 3.99557 4.16814 4.19397 4.33610 4.37698 4.42975 4.55614 4.61639 4.68313 4.69181 4.69892 4.80697 4.81631 4.83009 4.92917 4.94552 4.94810 5.05290 5.07075 5.09258 5.19221 5.21982 5.29260 5.31951 5.32928 5.45236 5.57889 5.66453 5.95237 6.06031 6.17402 6.46819 6.55036 6.82051 6.93777 7.38321 8.86947 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.012132 B = 0.006160 C = 0.004758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2307.322417 B = 4544.519880 C = 5883.474258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.069 3.931 3 C -0.169 4.169 4 N -0.543 5.543 5 C 0.220 3.780 6 C -0.519 4.519 7 H 0.052 0.948 8 C 0.010 3.990 9 N -0.929 5.929 10 Si 0.956 3.044 11 H -0.273 1.273 12 H -0.276 1.276 13 H -0.277 1.277 14 C 0.275 3.725 15 N -0.567 5.567 16 C 0.520 3.480 17 O -0.517 6.517 18 C -0.137 4.137 19 C -0.083 4.083 20 C -0.133 4.133 21 C -0.064 4.064 22 C -0.159 4.159 23 C -0.159 4.159 24 C 0.527 3.473 25 O -0.505 6.505 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.051 0.949 29 H 0.082 0.918 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.042 0.958 33 H 0.018 0.982 34 H -0.025 1.025 35 H 0.264 0.736 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.115 0.885 43 H 0.131 0.869 44 H 0.031 0.969 45 H 0.066 0.934 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.439 -14.017 -17.511 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.039 4.039 3 C -0.228 4.228 4 N -0.268 5.268 5 C 0.094 3.906 6 C -0.557 4.557 7 H 0.070 0.930 8 C -0.188 4.188 9 N -0.569 5.569 10 Si 0.781 3.219 11 H -0.198 1.198 12 H -0.201 1.201 13 H -0.202 1.202 14 C 0.064 3.936 15 N -0.310 5.310 16 C 0.312 3.688 17 O -0.392 6.392 18 C -0.175 4.175 19 C -0.086 4.086 20 C -0.190 4.190 21 C -0.082 4.082 22 C -0.216 4.216 23 C -0.216 4.216 24 C 0.317 3.683 25 O -0.377 6.377 26 H 0.058 0.942 27 H 0.098 0.902 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.095 0.905 32 H 0.061 0.939 33 H 0.036 0.964 34 H -0.007 1.007 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.096 0.904 38 H 0.165 0.835 39 H 0.172 0.828 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.133 0.867 43 H 0.149 0.851 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.086 0.914 48 H 0.093 0.907 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 5.094 -13.905 -17.022 22.562 hybrid contribution 0.195 1.243 1.689 2.106 sum 5.289 -12.663 -15.333 20.577 Atomic orbital electron populations 1.21722 0.93858 1.01597 1.01542 1.21885 0.96482 0.92802 0.92771 1.22295 1.00365 0.98104 1.02035 1.61949 1.13807 1.47633 1.03456 1.19273 0.94748 0.90873 0.85665 1.21458 1.47651 0.95362 0.91276 0.92954 1.25702 0.95073 0.96261 1.01763 1.70048 1.50329 1.12890 1.23677 0.85585 0.78545 0.78771 0.78963 1.19806 1.20124 1.20182 1.21779 0.90814 0.85779 0.95261 1.47122 1.63501 1.09786 1.10590 1.21612 0.72713 0.93694 0.80796 1.90715 1.48398 1.38825 1.61251 1.22862 1.09537 0.87038 0.98107 1.21710 1.01039 0.94741 0.91135 1.21877 0.91966 1.00357 1.04830 1.21094 0.90951 0.95286 1.00892 1.22009 1.02899 0.99660 0.97011 1.22008 0.98317 1.00308 1.00958 1.21562 0.72819 0.83782 0.90106 1.90748 1.45831 1.82147 1.18972 0.94227 0.90202 0.92950 0.89963 0.93901 0.90457 0.93934 0.96384 1.00722 0.92676 0.92085 0.90400 0.83488 0.82780 0.92287 0.91717 0.86690 0.85102 0.94976 0.91482 0.90668 0.91427 0.90711 0.96293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 9.10 71.98 0.65 -3.94 16 2 C 0.07 2.64 2.87 44.91 0.13 2.76 16 3 C -0.17 -6.27 8.47 71.98 0.61 -5.66 16 4 N -0.54 -24.53 4.47 -887.79 -3.97 -28.50 16 5 C 0.22 11.95 3.30 85.56 0.28 12.23 16 6 C -0.52 -30.95 8.34 25.60 0.21 -30.74 16 7 H 0.05 3.26 7.81 -2.91 -0.02 3.24 16 8 C 0.01 0.61 5.46 84.66 0.46 1.08 16 9 N -0.93 -56.95 13.29 21.45 0.28 -56.66 16 10 Si 0.96 47.38 29.54 68.60 2.03 49.41 16 11 H -0.27 -13.07 7.11 99.48 0.71 -12.36 16 12 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 13 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 14 C 0.28 11.68 5.10 170.80 0.87 12.55 16 15 N -0.57 -19.38 2.77 -767.02 -2.13 -21.50 16 16 C 0.52 14.49 7.35 87.99 0.65 15.13 16 17 O -0.52 -16.92 15.72 -2.87 -0.05 -16.97 16 18 C -0.14 -2.12 5.77 30.46 0.18 -1.94 16 19 C -0.08 -1.60 0.60 -52.32 -0.03 -1.63 16 20 C -0.13 -1.86 8.07 71.98 0.58 -1.28 16 21 C -0.06 -1.08 2.27 -10.80 -0.02 -1.11 16 22 C -0.16 -3.30 8.55 71.98 0.62 -2.69 16 23 C -0.16 -3.45 8.63 71.98 0.62 -2.82 16 24 C 0.53 17.33 5.16 87.99 0.45 17.78 16 25 O -0.51 -21.53 15.46 -2.85 -0.04 -21.58 16 26 H 0.04 1.55 6.60 -2.39 -0.02 1.54 16 27 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.08 3.03 5.24 -2.39 -0.01 3.02 16 30 H 0.04 1.61 6.59 -2.39 -0.02 1.59 16 31 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 32 H 0.04 1.75 6.67 -2.39 -0.02 1.74 16 33 H 0.02 1.04 6.16 -2.39 -0.01 1.03 16 34 H -0.02 -1.46 7.19 -2.39 -0.02 -1.47 16 35 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 36 H 0.06 2.53 5.98 -2.39 -0.01 2.51 16 37 H 0.08 3.82 6.79 -2.39 -0.02 3.80 16 38 H 0.15 1.57 6.45 -2.39 -0.02 1.55 16 39 H 0.15 1.33 7.74 -2.39 -0.02 1.31 16 40 H 0.06 0.86 8.14 -2.38 -0.02 0.85 16 41 H 0.06 1.08 6.37 -2.39 -0.02 1.07 16 42 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.03 0.97 6.10 -2.39 -0.01 0.96 16 45 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 46 H 0.07 1.28 6.42 -2.39 -0.02 1.26 16 47 H 0.07 1.26 6.53 -2.39 -0.02 1.25 16 48 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 49 H 0.02 0.59 7.13 -2.39 -0.02 0.57 16 Total: -1.00 -76.16 370.82 3.32 -72.84 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: 0.94 Total: 13.24 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: 6.26 Total: 9.73 kcal Atomic # 7 Polarization: -100.86 SS G_CDS: -5.81 Total: -106.67 kcal Atomic # 8 Polarization: -38.45 SS G_CDS: -0.09 Total: -38.54 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -76.16 3.32 -72.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739841460.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.717 kcal (2) G-P(sol) polarization free energy of solvation -76.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds