Wall clock time and date at job start Fri Apr 10 2020 22:28:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46689 * 2 1 4 4 N 1.46497 * 109.47444 * 120.00071 * 2 1 3 5 5 C 1.34780 * 119.99719 * 300.00139 * 4 2 1 6 6 O 1.21578 * 120.00108 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99704 * 179.97438 * 5 4 2 8 8 C 1.46498 * 119.99966 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46847 * 184.79711 * 8 7 5 10 10 C 1.50694 * 115.55031 * 294.81434 * 9 8 7 11 11 H 1.08008 * 119.99906 * 95.20931 * 10 9 8 12 12 C 1.37882 * 120.00284 * 274.93190 * 10 9 8 13 13 N 1.31518 * 119.99808 * 355.41947 * 12 10 9 14 14 Si 1.86800 * 120.00242 * 175.41794 * 12 10 9 15 15 H 1.48502 * 109.47002 * 0.02562 * 14 12 10 16 16 H 1.48502 * 109.47091 * 119.99801 * 14 12 10 17 17 H 1.48497 * 109.47138 * 240.00628 * 14 12 10 18 18 C 1.53003 * 117.49932 * 80.48760 * 9 8 7 19 19 C 1.52998 * 117.49502 * 149.14904 * 9 8 7 20 20 C 1.52998 * 109.47407 * 240.00372 * 2 1 3 21 21 C 1.53173 * 109.54848 * 174.81655 * 20 2 1 22 22 C 1.53099 * 109.16194 * 183.24210 * 21 20 2 23 23 O 1.42901 * 109.48891 * 57.47298 * 22 21 20 24 24 C 1.42899 * 114.09895 * 298.89241 * 23 22 21 25 25 C 1.53102 * 109.41579 * 61.15713 * 24 23 22 26 26 H 1.08998 * 109.47220 * 299.99061 * 1 2 3 27 27 H 1.08997 * 109.47437 * 60.00149 * 1 2 3 28 28 H 1.09003 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47027 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47457 * 300.00443 * 3 2 1 31 31 H 1.09004 * 109.47153 * 60.00234 * 3 2 1 32 32 H 0.96996 * 119.99936 * 120.00425 * 4 2 1 33 33 H 0.97009 * 119.99753 * 0.02562 * 7 5 4 34 34 H 1.08993 * 109.47219 * 64.80231 * 8 7 5 35 35 H 1.09000 * 109.47241 * 304.79395 * 8 7 5 36 36 H 0.97001 * 119.99858 * 184.99726 * 13 12 10 37 37 H 1.08997 * 117.49622 * 214.99831 * 18 9 8 38 38 H 1.09000 * 117.49928 * 0.02562 * 18 9 8 39 39 H 1.08996 * 117.50254 * 359.97148 * 19 9 8 40 40 H 1.09005 * 117.49689 * 144.97447 * 19 9 8 41 41 H 1.09006 * 109.54327 * 294.99832 * 20 2 1 42 42 H 1.09004 * 109.52472 * 303.06550 * 21 20 2 43 43 H 1.09002 * 109.51802 * 63.24434 * 21 20 2 44 44 H 1.09000 * 109.40550 * 297.49576 * 22 21 20 45 45 H 1.08995 * 109.48573 * 177.50400 * 22 21 20 46 46 H 1.08997 * 109.48237 * 301.17759 * 24 23 22 47 47 H 1.09002 * 109.49390 * 181.14070 * 24 23 22 48 48 H 1.09000 * 109.52332 * 182.48694 * 25 24 23 49 49 H 1.08997 * 109.51896 * 62.29631 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6928 -0.2301 2.4202 6 8 0.9942 0.7586 2.5318 7 7 2.1417 -0.8658 3.5207 8 6 1.7873 -0.3656 4.8513 9 6 2.5161 -1.1881 5.9159 10 6 2.1182 -2.6390 6.0015 11 1 2.6914 -3.3881 5.4753 12 6 1.0258 -3.0110 6.7562 13 7 0.3854 -2.1134 7.4730 14 14 0.4554 -4.7898 6.7604 15 1 1.3386 -5.5949 5.8789 16 1 0.5161 -5.3258 8.1439 17 1 -0.9415 -4.8628 6.2619 18 6 3.9783 -0.8386 6.2004 19 6 2.8932 -0.4809 7.2192 20 6 2.0401 -0.7211 -1.2492 21 6 3.5662 -0.6102 -1.3179 22 6 4.0600 -1.2638 -2.6113 23 8 3.4342 -0.6355 -3.7319 24 6 2.0099 -0.7501 -3.7449 25 6 1.4336 -0.0738 -2.4981 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 0.0005 29 1 3.1300 1.4426 -0.0005 30 1 1.6765 1.9564 -0.8899 31 1 1.6766 1.9564 0.8900 32 1 2.5761 -1.4792 1.1071 33 1 2.6994 -1.6545 3.4316 34 1 0.7109 -0.4539 4.9978 35 1 2.0811 0.6806 4.9363 36 1 -0.3371 -2.3868 8.0597 37 1 4.6523 -1.6581 6.4494 38 1 4.4209 -0.0224 5.6293 39 1 2.6226 0.5703 7.3180 40 1 2.8532 -1.0651 8.1386 41 1 1.7524 -1.7717 -1.2069 42 1 3.8559 0.4406 -1.3086 43 1 4.0072 -1.1180 -0.4601 44 1 3.8068 -2.3239 -2.6009 45 1 5.1412 -1.1488 -2.6870 46 1 1.7299 -1.8034 -3.7492 47 1 1.6141 -0.2650 -4.6372 48 1 0.3508 -0.1984 -2.4837 49 1 1.6788 0.9881 -2.5136 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797566251.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:46 Heat of formation + Delta-G solvation = -64.522548 kcal Electronic energy + Delta-G solvation = -27044.830641 eV Core-core repulsion = 23393.290286 eV Total energy + Delta-G solvation = -3651.540355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54117 -39.14938 -37.16539 -36.26283 -33.31744 -32.77104 -31.95746 -31.53400 -30.23375 -27.27142 -26.23490 -25.45710 -24.95005 -23.64616 -21.68575 -21.12060 -20.05888 -19.44001 -18.96029 -17.85284 -16.58272 -16.28518 -16.05592 -15.62369 -15.12787 -14.85557 -14.64749 -14.58888 -14.21761 -14.06214 -13.89649 -13.47468 -13.28400 -12.84447 -12.71329 -12.57739 -12.03459 -11.95883 -11.87263 -11.61024 -11.57373 -11.40176 -11.09350 -11.01492 -10.95169 -10.80643 -10.76420 -10.52523 -10.36662 -10.22830 -9.75818 -9.54724 -9.28913 -9.02357 -8.78282 -8.48678 -8.22531 -7.96587 -6.07723 -4.17252 3.19782 3.23706 3.32915 3.34228 3.63118 3.82172 4.34082 4.39138 4.48328 4.53444 4.74081 4.83836 4.95559 5.07918 5.13879 5.18092 5.20423 5.30330 5.37391 5.41048 5.44254 5.51799 5.66538 5.70864 5.79655 5.80722 5.94449 5.98598 6.02719 6.05345 6.11582 6.35712 6.46921 6.52085 6.56148 6.61455 6.71473 6.86453 6.93229 6.93942 7.12848 7.37415 7.43175 7.47946 7.64254 7.80918 8.34410 8.70111 8.84234 9.25330 9.49730 10.99464 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.003186 C = 0.003075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.158621 B = 8786.500616 C = 9104.279808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.203 3.797 3 C -0.166 4.166 4 N -0.747 5.747 5 C 0.701 3.299 6 O -0.599 6.599 7 N -0.723 5.723 8 C 0.184 3.816 9 C 0.025 3.975 10 C -0.498 4.498 11 H 0.059 0.941 12 C 0.073 3.927 13 N -0.874 5.874 14 Si 0.890 3.110 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.211 4.211 19 C -0.142 4.142 20 C -0.090 4.090 21 C -0.155 4.155 22 C 0.061 3.939 23 O -0.385 6.385 24 C 0.061 3.939 25 C -0.151 4.151 26 H 0.084 0.916 27 H 0.059 0.941 28 H 0.051 0.949 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.082 0.918 32 H 0.390 0.610 33 H 0.395 0.605 34 H 0.063 0.937 35 H 0.037 0.963 36 H 0.261 0.739 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.049 0.951 45 H 0.093 0.907 46 H 0.049 0.951 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.535 1.973 -19.292 19.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.116 3.884 3 C -0.224 4.224 4 N -0.404 5.404 5 C 0.401 3.599 6 O -0.479 6.479 7 N -0.375 5.375 8 C 0.060 3.940 9 C 0.024 3.976 10 C -0.536 4.536 11 H 0.077 0.923 12 C -0.131 4.131 13 N -0.510 5.510 14 Si 0.718 3.282 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.248 4.248 19 C -0.180 4.180 20 C -0.109 4.109 21 C -0.192 4.192 22 C -0.016 4.016 23 O -0.303 6.303 24 C -0.016 4.016 25 C -0.188 4.188 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.070 0.930 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.101 0.899 32 H 0.224 0.776 33 H 0.228 0.772 34 H 0.082 0.918 35 H 0.055 0.945 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.094 0.906 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.111 0.889 46 H 0.067 0.933 47 H 0.111 0.889 48 H 0.098 0.902 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.777 3.024 -19.201 19.801 hybrid contribution -0.054 -1.940 0.409 1.984 sum 3.723 1.084 -18.791 19.187 Atomic orbital electron populations 1.22311 0.94612 1.02031 1.03460 1.19933 0.93850 0.91994 0.82585 1.22351 1.00858 0.95866 1.03294 1.45279 1.57573 1.33232 1.04295 1.16019 0.80455 0.83156 0.80291 1.90796 1.43161 1.28009 1.85903 1.45197 1.55031 1.32080 1.05184 1.20815 0.99912 0.94439 0.78847 1.19057 0.90348 0.95143 0.93052 1.20375 1.11784 0.90022 1.31404 0.92274 1.24987 0.95898 0.97056 0.95155 1.70003 1.22579 1.32862 1.25562 0.86584 0.78744 0.85115 0.77806 1.19788 1.21047 1.20988 1.23006 0.93750 1.01899 1.06166 1.22463 1.02000 0.98355 0.95215 1.21415 0.95244 1.00071 0.94134 1.22353 0.95577 1.03029 0.98271 1.22590 0.97746 0.95700 0.85566 1.87924 1.19413 1.77887 1.45115 1.22590 0.81130 0.99691 0.98173 1.22340 1.01043 1.01397 0.94066 0.89762 0.92238 0.93035 0.92696 0.92368 0.89937 0.77641 0.77162 0.91841 0.94505 0.92951 0.90499 0.91771 0.91831 0.89557 0.90616 0.90165 0.90687 0.93297 0.88927 0.93287 0.88921 0.90208 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.15 7.92 37.16 0.29 -1.86 16 2 C 0.20 2.43 0.53 -131.82 -0.07 2.36 16 3 C -0.17 -2.09 7.67 37.16 0.29 -1.80 16 4 N -0.75 -10.22 4.87 -52.42 -0.26 -10.47 16 5 C 0.70 12.84 7.98 -86.91 -0.69 12.15 16 6 O -0.60 -12.88 12.54 5.30 0.07 -12.82 16 7 N -0.72 -13.84 5.48 -65.23 -0.36 -14.20 16 8 C 0.18 4.15 5.50 -4.04 -0.02 4.13 16 9 C 0.02 0.58 1.47 -155.66 -0.23 0.35 16 10 C -0.50 -12.71 8.59 -34.44 -0.30 -13.01 16 11 H 0.06 1.48 7.82 -52.48 -0.41 1.07 16 12 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 13 N -0.87 -24.16 12.65 55.43 0.70 -23.46 16 14 Si 0.89 20.48 29.54 -169.99 -5.02 15.45 16 15 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 C -0.21 -4.39 9.96 -26.69 -0.27 -4.65 16 19 C -0.14 -3.26 9.14 -26.69 -0.24 -3.51 16 20 C -0.09 -0.82 1.67 -90.44 -0.15 -0.97 16 21 C -0.15 -1.34 4.86 -26.59 -0.13 -1.47 16 22 C 0.06 0.50 6.84 37.21 0.25 0.75 16 23 O -0.38 -3.79 10.77 -35.23 -0.38 -4.17 16 24 C 0.06 0.48 6.84 37.21 0.25 0.73 16 25 C -0.15 -1.23 4.64 -26.58 -0.12 -1.35 16 26 H 0.08 1.39 6.16 -51.93 -0.32 1.07 16 27 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.66 6.28 -51.93 -0.33 0.33 16 30 H 0.06 0.63 6.50 -51.93 -0.34 0.29 16 31 H 0.08 1.32 6.16 -51.93 -0.32 1.00 16 32 H 0.39 4.45 7.70 -40.82 -0.31 4.14 16 33 H 0.40 6.94 8.35 -40.82 -0.34 6.60 16 34 H 0.06 1.65 8.14 -51.93 -0.42 1.22 16 35 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 36 H 0.26 6.92 8.32 -40.82 -0.34 6.58 16 37 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 38 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.06 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 2.12 8.14 -51.93 -0.42 1.70 16 41 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.76 6.18 -51.93 -0.32 0.44 16 43 H 0.07 0.62 7.29 -51.93 -0.38 0.24 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.08 0.60 6.56 -51.93 -0.34 0.26 16 49 H 0.08 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -29.60 374.08 -9.13 -38.73 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -8.28 Total: 11.63 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -1.23 Total: -6.32 kcal Atomic # 7 Polarization: -48.23 SS G_CDS: 0.09 Total: -48.14 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: -0.31 Total: -16.99 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -29.60 -9.13 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797566251.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.796 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds