Wall clock time and date at job start Fri Apr 10 2020 22:28:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 119.99526 * 2 1 4 4 N 1.34775 * 120.00496 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00078 * 184.93952 * 4 2 1 6 6 C 1.53002 * 109.47112 * 298.25548 * 5 4 2 7 7 C 1.50697 * 109.47323 * 58.25936 * 5 4 2 8 8 O 1.21284 * 120.00063 * 7.16913 * 7 5 4 9 9 N 1.34776 * 120.00171 * 187.16809 * 7 5 4 10 10 C 1.46926 * 120.62937 * 354.65419 * 9 7 5 11 11 C 1.52760 * 109.00727 * 233.58406 * 10 9 7 12 12 C 1.53038 * 109.38289 * 305.58445 * 11 10 9 13 13 C 1.53041 * 109.53685 * 61.24081 * 12 11 10 14 14 H 1.09004 * 109.52161 * 58.60793 * 13 12 11 15 15 C 1.50698 * 109.49681 * 178.68233 * 13 12 11 16 16 H 1.07999 * 119.99764 * 119.84011 * 15 13 12 17 17 C 1.37878 * 120.00297 * 299.83650 * 15 13 12 18 18 N 1.31510 * 120.00113 * 179.97438 * 17 15 13 19 19 Si 1.86798 * 119.99801 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47170 * 89.99591 * 19 17 15 21 21 H 1.48501 * 109.47197 * 209.99309 * 19 17 15 22 22 H 1.48499 * 109.47255 * 329.99885 * 19 17 15 23 23 C 1.46926 * 120.63409 * 174.93241 * 9 7 5 24 24 C 1.53003 * 109.46846 * 178.25994 * 5 4 2 25 25 C 1.53002 * 109.47012 * 305.72132 * 24 5 4 26 26 C 1.52997 * 109.47422 * 65.72392 * 24 5 4 27 27 H 1.09005 * 109.46557 * 240.00004 * 1 2 3 28 28 H 1.08998 * 109.46961 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46963 * 120.00709 * 1 2 3 30 30 H 0.96998 * 119.99555 * 4.93244 * 4 2 1 31 31 H 1.09000 * 109.47186 * 175.02305 * 6 5 4 32 32 H 1.08996 * 109.47026 * 295.02332 * 6 5 4 33 33 H 1.09001 * 109.46713 * 55.02278 * 6 5 4 34 34 H 1.09008 * 109.58719 * 353.41648 * 10 9 7 35 35 H 1.09002 * 109.58927 * 113.84097 * 10 9 7 36 36 H 1.09008 * 109.56400 * 185.55145 * 11 10 9 37 37 H 1.08995 * 109.38867 * 65.51492 * 11 10 9 38 38 H 1.09006 * 109.45976 * 301.21862 * 12 11 10 39 39 H 1.08999 * 109.46256 * 181.26241 * 12 11 10 40 40 H 0.97003 * 119.99783 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58424 * 246.16118 * 23 9 7 42 42 H 1.09001 * 109.58526 * 6.43754 * 23 9 7 43 43 H 1.09001 * 109.46942 * 185.72574 * 24 5 4 44 44 H 1.09001 * 109.46907 * 60.00420 * 25 24 5 45 45 H 1.09000 * 109.47148 * 180.02562 * 25 24 5 46 46 H 1.09003 * 109.47270 * 299.99884 * 25 24 5 47 47 H 1.08999 * 109.46658 * 306.05296 * 26 24 5 48 48 H 1.08995 * 109.47204 * 66.05371 * 26 24 5 49 49 H 1.08999 * 109.47357 * 186.05714 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6419 -1.1694 0.1087 6 6 4.2441 -0.4327 -1.0894 7 6 4.0515 -0.4761 1.3825 8 8 3.2093 -0.1401 2.1879 9 7 5.3538 -0.2292 1.6266 10 6 6.3940 -0.7322 0.7190 11 6 7.4186 -1.5257 1.5277 12 6 7.9479 -0.6558 2.6701 13 6 6.7927 -0.2697 3.5969 14 1 6.3232 -1.1719 3.9890 15 6 7.3200 0.5598 4.7391 16 1 6.9563 1.5657 4.8889 17 6 8.2667 0.0348 5.5930 18 7 8.7272 0.7590 6.5895 19 14 8.8962 -1.7047 5.3336 20 1 10.0808 -1.6741 4.4386 21 1 9.2796 -2.2927 6.6422 22 1 7.8287 -2.5301 4.7137 23 6 5.7607 0.5427 2.8087 24 6 4.1496 -2.6127 0.1277 25 6 3.4394 -3.3885 1.2388 26 6 3.8592 -3.2732 -1.2215 27 1 -0.3632 -0.5139 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 1.6987 -2.0056 -0.0731 31 1 5.3242 -0.3571 -0.9641 32 1 4.0220 -0.9833 -2.0035 33 1 3.8149 0.5672 -1.1542 34 1 5.9417 -1.3805 -0.0317 35 1 6.8890 0.1067 0.2299 36 1 8.2455 -1.8196 0.8811 37 1 6.9438 -2.4166 1.9387 38 1 8.4012 0.2465 2.2595 39 1 8.6956 -1.2130 3.2346 40 1 9.3929 0.3894 7.1905 41 1 6.2030 1.4878 2.4934 42 1 4.8902 0.7377 3.4351 43 1 5.2241 -2.6174 0.3108 44 1 2.3649 -3.3837 1.0557 45 1 3.8014 -4.4166 1.2526 46 1 3.6464 -2.9179 2.2000 47 1 2.7991 -3.1731 -1.4543 48 1 4.4493 -2.7874 -1.9984 49 1 4.1222 -4.3299 -1.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824745367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:48 Heat of formation + Delta-G solvation = -55.408654 kcal Electronic energy + Delta-G solvation = -28727.589565 eV Core-core repulsion = 25076.444418 eV Total energy + Delta-G solvation = -3651.145147 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.21156 -38.95746 -37.15552 -36.70838 -33.65957 -32.98002 -31.83020 -31.12120 -30.38792 -28.93116 -27.52931 -25.50924 -25.10188 -23.85861 -21.71075 -21.18959 -20.77467 -19.66281 -18.59228 -17.21667 -16.79831 -16.43105 -16.01407 -15.25008 -15.03605 -14.89572 -14.59967 -14.48341 -13.91914 -13.85644 -13.67525 -13.35271 -13.15887 -12.91076 -12.65662 -12.60133 -12.57281 -12.44880 -12.41967 -12.17785 -12.04643 -11.87700 -11.34386 -11.28254 -11.08311 -10.99606 -10.81825 -10.51828 -10.29658 -10.13178 -9.82295 -9.66734 -9.60134 -9.34881 -9.05299 -8.76865 -8.55530 -8.00978 -6.08368 -4.08114 2.69897 3.01785 3.11656 3.23454 3.35118 3.37675 3.52989 4.37673 4.38940 4.48040 4.61773 4.78745 4.93109 5.01955 5.15221 5.16365 5.20446 5.25126 5.30361 5.32451 5.37547 5.48001 5.54445 5.60124 5.63720 5.69085 5.74445 5.78046 5.86834 5.97121 5.99932 6.07684 6.10445 6.21078 6.26996 6.36796 6.43366 6.57151 6.71872 6.76047 6.89867 7.16926 7.48184 7.50639 7.74373 7.91206 8.31919 8.49126 8.63392 8.95633 9.53153 11.04805 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.004608 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.535894 B = 6075.295780 C = 6656.952168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.519 3.481 3 O -0.531 6.531 4 N -0.712 5.712 5 C 0.167 3.833 6 C -0.186 4.186 7 C 0.518 3.482 8 O -0.532 6.532 9 N -0.604 5.604 10 C 0.089 3.911 11 C -0.141 4.141 12 C -0.121 4.121 13 C 0.007 3.993 14 H 0.029 0.971 15 C -0.513 4.513 16 H 0.076 0.924 17 C 0.072 3.928 18 N -0.899 5.899 19 Si 0.888 3.112 20 H -0.279 1.279 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.130 3.870 24 C -0.112 4.112 25 C -0.150 4.150 26 C -0.147 4.147 27 H 0.087 0.913 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.400 0.600 31 H 0.084 0.916 32 H 0.067 0.933 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.049 0.951 40 H 0.264 0.736 41 H 0.061 0.939 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.062 0.938 46 H 0.063 0.937 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.189 -10.552 -19.425 24.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.306 3.694 3 O -0.406 6.406 4 N -0.366 5.366 5 C 0.077 3.923 6 C -0.243 4.243 7 C 0.303 3.697 8 O -0.408 6.408 9 N -0.337 5.337 10 C -0.033 4.033 11 C -0.179 4.179 12 C -0.159 4.159 13 C -0.013 4.013 14 H 0.047 0.953 15 C -0.552 4.552 16 H 0.094 0.906 17 C -0.130 4.130 18 N -0.537 5.537 19 Si 0.719 3.281 20 H -0.206 1.206 21 H -0.225 1.225 22 H -0.191 1.191 23 C 0.009 3.991 24 C -0.130 4.130 25 C -0.207 4.207 26 C -0.204 4.204 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.101 0.899 30 H 0.236 0.764 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.074 0.926 45 H 0.081 0.919 46 H 0.082 0.918 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.111 -9.566 -18.810 23.849 hybrid contribution 0.375 -1.360 0.059 1.412 sum -10.736 -10.927 -18.750 24.212 Atomic orbital electron populations 1.21884 0.91994 1.05381 1.03812 1.20623 0.90350 0.83465 0.74943 1.90692 1.70432 1.31412 1.48092 1.45781 1.05711 1.09034 1.76080 1.20210 0.81729 0.95893 0.94508 1.22754 1.02601 1.02784 0.96196 1.20399 0.82543 0.79302 0.87430 1.90652 1.50202 1.52332 1.47598 1.48133 1.04757 1.54135 1.26651 1.22211 0.89871 0.98540 0.92689 1.21978 0.98071 0.99200 0.98692 1.21977 0.99707 0.98520 0.95697 1.19452 0.91754 0.96480 0.93624 0.95285 1.20924 1.22970 1.01675 1.09589 0.90624 1.24979 0.95997 0.97278 0.94762 1.69897 1.30229 1.37003 1.16583 0.86826 0.79343 0.85689 0.76248 1.20581 1.22548 1.19146 1.21735 0.99100 0.93475 0.84752 1.21731 1.02411 0.91836 0.97037 1.21861 1.00082 1.00159 0.98635 1.21914 1.01920 1.00657 0.95959 0.89419 0.89101 0.89903 0.76427 0.89744 0.91371 0.89733 0.88769 0.91395 0.91627 0.92137 0.91893 0.93233 0.92629 0.92054 0.89760 0.87939 0.92591 0.91866 0.91811 0.92511 0.91776 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 10.32 36.01 0.37 -1.17 16 2 C 0.52 7.12 6.60 -10.98 -0.07 7.05 16 3 O -0.53 -9.82 13.87 -10.59 -0.15 -9.96 16 4 N -0.71 -8.25 4.24 -48.68 -0.21 -8.46 16 5 C 0.17 2.15 0.19 -132.97 -0.02 2.12 16 6 C -0.19 -2.20 7.76 37.16 0.29 -1.91 16 7 C 0.52 9.34 4.73 -10.99 -0.05 9.29 16 8 O -0.53 -11.69 14.42 -10.60 -0.15 -11.85 16 9 N -0.60 -10.91 2.97 -173.03 -0.51 -11.43 16 10 C 0.09 1.27 3.87 -3.93 -0.02 1.26 16 11 C -0.14 -2.20 5.92 -26.83 -0.16 -2.36 16 12 C -0.12 -2.49 4.66 -26.69 -0.12 -2.61 16 13 C 0.01 0.15 1.84 -91.66 -0.17 -0.02 16 14 H 0.03 0.73 7.20 -51.93 -0.37 0.35 16 15 C -0.51 -14.45 9.14 -34.44 -0.31 -14.77 16 16 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 17 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 18 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 19 Si 0.89 21.84 24.39 -169.99 -4.15 17.69 16 20 H -0.28 -6.58 6.86 56.52 0.39 -6.19 16 21 H -0.30 -7.39 7.11 56.52 0.40 -6.99 16 22 H -0.27 -6.29 6.53 56.52 0.37 -5.92 16 23 C 0.13 2.83 5.67 -3.71 -0.02 2.81 16 24 C -0.11 -1.12 1.94 -90.62 -0.18 -1.30 16 25 C -0.15 -1.58 8.78 37.16 0.33 -1.26 16 26 C -0.15 -1.02 8.41 37.16 0.31 -0.71 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.86 8.12 -51.93 -0.42 0.43 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.40 3.34 6.18 -40.82 -0.25 3.09 16 31 H 0.08 0.93 4.30 -51.93 -0.22 0.71 16 32 H 0.07 0.62 6.19 -51.93 -0.32 0.30 16 33 H 0.08 1.25 6.01 -51.93 -0.31 0.94 16 34 H 0.09 1.06 2.70 -51.92 -0.14 0.92 16 35 H 0.07 0.91 7.97 -51.93 -0.41 0.49 16 36 H 0.07 0.84 8.14 -51.92 -0.42 0.42 16 37 H 0.06 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 39 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 40 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 42 H 0.08 2.02 7.00 -51.93 -0.36 1.66 16 43 H 0.10 1.08 4.91 -51.93 -0.25 0.82 16 44 H 0.06 0.50 6.57 -51.93 -0.34 0.16 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.90 7.40 -51.93 -0.38 0.51 16 47 H 0.06 0.35 7.07 -51.93 -0.37 -0.02 16 48 H 0.06 0.41 6.60 -51.93 -0.34 0.07 16 49 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -35.90 352.46 -6.67 -42.56 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.66 Total: 4.56 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 0.07 Total: -1.60 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.05 Total: -46.72 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.30 Total: -21.81 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.15 Total: 17.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.90 -6.67 -42.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.844 kcal (2) G-P(sol) polarization free energy of solvation -35.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds