Wall clock time and date at job start Fri Apr 10 2020 22:28:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 O 1.21279 * 119.99526 * 2 1 4 4 N 1.34775 * 120.00496 * 180.02562 * 2 1 3 5 5 C 1.46493 * 120.00078 * 184.93952 * 4 2 1 6 6 C 1.53002 * 109.47112 * 298.25548 * 5 4 2 7 7 C 1.50697 * 109.47323 * 58.25936 * 5 4 2 8 8 O 1.21284 * 120.00063 * 7.16913 * 7 5 4 9 9 N 1.34776 * 120.00171 * 187.16809 * 7 5 4 10 10 C 1.46926 * 120.62937 * 354.65419 * 9 7 5 11 11 C 1.52760 * 109.00727 * 233.58406 * 10 9 7 12 12 C 1.53038 * 109.38289 * 305.58445 * 11 10 9 13 13 C 1.53041 * 109.53685 * 61.24081 * 12 11 10 14 14 H 1.09004 * 109.52161 * 58.60793 * 13 12 11 15 15 C 1.50698 * 109.49681 * 178.68233 * 13 12 11 16 16 H 1.07999 * 119.99764 * 119.84011 * 15 13 12 17 17 C 1.37878 * 120.00297 * 299.83650 * 15 13 12 18 18 N 1.31510 * 120.00113 * 179.97438 * 17 15 13 19 19 Si 1.86798 * 119.99801 * 0.02562 * 17 15 13 20 20 H 1.48502 * 109.47170 * 89.99591 * 19 17 15 21 21 H 1.48501 * 109.47197 * 209.99309 * 19 17 15 22 22 H 1.48499 * 109.47255 * 329.99885 * 19 17 15 23 23 C 1.46926 * 120.63409 * 174.93241 * 9 7 5 24 24 C 1.53003 * 109.46846 * 178.25994 * 5 4 2 25 25 C 1.53002 * 109.47012 * 305.72132 * 24 5 4 26 26 C 1.52997 * 109.47422 * 65.72392 * 24 5 4 27 27 H 1.09005 * 109.46557 * 240.00004 * 1 2 3 28 28 H 1.08998 * 109.46961 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.46963 * 120.00709 * 1 2 3 30 30 H 0.96998 * 119.99555 * 4.93244 * 4 2 1 31 31 H 1.09000 * 109.47186 * 175.02305 * 6 5 4 32 32 H 1.08996 * 109.47026 * 295.02332 * 6 5 4 33 33 H 1.09001 * 109.46713 * 55.02278 * 6 5 4 34 34 H 1.09008 * 109.58719 * 353.41648 * 10 9 7 35 35 H 1.09002 * 109.58927 * 113.84097 * 10 9 7 36 36 H 1.09008 * 109.56400 * 185.55145 * 11 10 9 37 37 H 1.08995 * 109.38867 * 65.51492 * 11 10 9 38 38 H 1.09006 * 109.45976 * 301.21862 * 12 11 10 39 39 H 1.08999 * 109.46256 * 181.26241 * 12 11 10 40 40 H 0.97003 * 119.99783 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.58424 * 246.16118 * 23 9 7 42 42 H 1.09001 * 109.58526 * 6.43754 * 23 9 7 43 43 H 1.09001 * 109.46942 * 185.72574 * 24 5 4 44 44 H 1.09001 * 109.46907 * 60.00420 * 25 24 5 45 45 H 1.09000 * 109.47148 * 180.02562 * 25 24 5 46 46 H 1.09003 * 109.47270 * 299.99884 * 25 24 5 47 47 H 1.08999 * 109.46658 * 306.05296 * 26 24 5 48 48 H 1.08995 * 109.47204 * 66.05371 * 26 24 5 49 49 H 1.08999 * 109.47357 * 186.05714 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 3.6419 -1.1694 0.1087 6 6 4.2441 -0.4327 -1.0894 7 6 4.0515 -0.4761 1.3825 8 8 3.2093 -0.1401 2.1879 9 7 5.3538 -0.2292 1.6266 10 6 6.3940 -0.7322 0.7190 11 6 7.4186 -1.5257 1.5277 12 6 7.9479 -0.6558 2.6701 13 6 6.7927 -0.2697 3.5969 14 1 6.3232 -1.1719 3.9890 15 6 7.3200 0.5598 4.7391 16 1 6.9563 1.5657 4.8889 17 6 8.2667 0.0348 5.5930 18 7 8.7272 0.7590 6.5895 19 14 8.8962 -1.7047 5.3336 20 1 10.0808 -1.6741 4.4386 21 1 9.2796 -2.2927 6.6422 22 1 7.8287 -2.5301 4.7137 23 6 5.7607 0.5427 2.8087 24 6 4.1496 -2.6127 0.1277 25 6 3.4394 -3.3885 1.2388 26 6 3.8592 -3.2732 -1.2215 27 1 -0.3632 -0.5139 0.8901 28 1 -0.3633 1.0277 0.0005 29 1 -0.3633 -0.5139 -0.8899 30 1 1.6987 -2.0056 -0.0731 31 1 5.3242 -0.3571 -0.9641 32 1 4.0220 -0.9833 -2.0035 33 1 3.8149 0.5672 -1.1542 34 1 5.9417 -1.3805 -0.0317 35 1 6.8890 0.1067 0.2299 36 1 8.2455 -1.8196 0.8811 37 1 6.9438 -2.4166 1.9387 38 1 8.4012 0.2465 2.2595 39 1 8.6956 -1.2130 3.2346 40 1 9.3929 0.3894 7.1905 41 1 6.2030 1.4878 2.4934 42 1 4.8902 0.7377 3.4351 43 1 5.2241 -2.6174 0.3108 44 1 2.3649 -3.3837 1.0557 45 1 3.8014 -4.4166 1.2526 46 1 3.6464 -2.9179 2.2000 47 1 2.7991 -3.1731 -1.4543 48 1 4.4493 -2.7874 -1.9984 49 1 4.1222 -4.3299 -1.1727 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824745367.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:47 Heat of formation + Delta-G solvation = -81.991719 kcal Electronic energy + Delta-G solvation = -28728.742293 eV Core-core repulsion = 25076.444418 eV Total energy + Delta-G solvation = -3652.297875 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.38363 -40.22875 -38.50578 -37.99255 -35.43064 -34.07599 -33.55564 -32.46106 -31.64515 -29.82701 -28.33952 -27.01018 -26.77594 -24.97763 -23.27702 -22.39747 -21.78178 -21.07699 -20.01728 -18.90028 -18.15733 -17.72453 -17.39321 -16.72094 -16.15768 -16.11972 -15.95666 -15.63639 -15.35232 -15.09507 -14.95641 -14.72425 -14.48959 -14.30050 -14.09271 -13.78929 -13.63931 -13.54826 -13.34172 -13.18304 -13.03028 -12.91222 -12.73230 -12.52816 -12.35306 -12.20461 -12.10458 -11.99908 -11.77638 -11.59138 -11.51860 -11.23490 -11.11217 -10.74346 -10.71314 -10.61687 -10.00347 -9.55292 -8.34087 -6.40199 1.26170 1.34137 1.44972 1.59041 1.69585 2.07135 2.29522 2.33586 3.00437 3.38779 3.49569 3.78803 3.87863 3.95672 4.00046 4.08791 4.15898 4.26110 4.35370 4.40792 4.45950 4.50445 4.60098 4.63128 4.66437 4.71060 4.77633 4.81468 4.83922 4.90017 4.94461 5.01992 5.05863 5.08489 5.10627 5.15358 5.26767 5.31074 5.37151 5.38750 5.46966 5.50685 5.62539 5.72240 6.22719 6.51160 6.60682 6.65673 7.19830 7.25621 7.37581 8.83062 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.004608 C = 0.004205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.535894 B = 6075.295780 C = 6656.952168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.506 3.494 3 O -0.588 6.588 4 N -0.699 5.699 5 C 0.171 3.829 6 C -0.181 4.181 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.607 5.607 10 C 0.083 3.917 11 C -0.134 4.134 12 C -0.121 4.121 13 C 0.014 3.986 14 H 0.014 0.986 15 C -0.527 4.527 16 H 0.026 0.974 17 C 0.013 3.987 18 N -0.950 5.950 19 Si 0.958 3.042 20 H -0.253 1.253 21 H -0.300 1.300 22 H -0.250 1.250 23 C 0.142 3.858 24 C -0.106 4.106 25 C -0.150 4.150 26 C -0.143 4.143 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.123 0.877 30 H 0.417 0.583 31 H 0.093 0.907 32 H 0.105 0.895 33 H 0.051 0.949 34 H 0.135 0.865 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.041 0.959 40 H 0.267 0.733 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.103 0.897 44 H 0.069 0.931 45 H 0.085 0.915 46 H 0.018 0.982 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.074 -14.750 -23.593 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.295 3.705 3 O -0.468 6.468 4 N -0.354 5.354 5 C 0.080 3.920 6 C -0.239 4.239 7 C 0.294 3.706 8 O -0.464 6.464 9 N -0.340 5.340 10 C -0.037 4.037 11 C -0.172 4.172 12 C -0.159 4.159 13 C -0.006 4.006 14 H 0.032 0.968 15 C -0.565 4.565 16 H 0.045 0.955 17 C -0.185 4.185 18 N -0.589 5.589 19 Si 0.784 3.216 20 H -0.178 1.178 21 H -0.228 1.228 22 H -0.174 1.174 23 C 0.019 3.981 24 C -0.125 4.125 25 C -0.208 4.208 26 C -0.199 4.199 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.141 0.859 30 H 0.257 0.743 31 H 0.112 0.888 32 H 0.123 0.877 33 H 0.070 0.930 34 H 0.152 0.848 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.121 0.879 44 H 0.088 0.912 45 H 0.103 0.897 46 H 0.037 0.963 47 H 0.086 0.914 48 H 0.096 0.904 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.009 -13.814 -23.033 29.027 hybrid contribution 0.246 0.078 1.452 1.474 sum -10.763 -13.736 -21.582 27.754 Atomic orbital electron populations 1.21900 0.88457 1.05711 1.06218 1.21520 0.92253 0.83066 0.73635 1.90674 1.71889 1.33471 1.50733 1.45724 1.05405 1.09455 1.74844 1.20282 0.82663 0.97390 0.91618 1.22745 1.02742 1.01365 0.97013 1.21566 0.81762 0.78532 0.88746 1.90615 1.51551 1.54418 1.49781 1.48193 1.06195 1.53738 1.25830 1.22604 0.88940 0.99677 0.92498 1.21974 0.99648 0.98083 0.97463 1.21850 0.97729 0.99563 0.96711 1.19292 0.93301 0.94910 0.93096 0.96805 1.21223 1.23050 1.00417 1.11854 0.95523 1.25927 0.96081 1.02342 0.94104 1.70062 1.31354 1.39552 1.17972 0.85703 0.79813 0.79496 0.76567 1.17830 1.22806 1.17414 1.21229 0.97038 0.93751 0.86130 1.21769 1.02058 0.89585 0.99096 1.21878 1.01353 1.00992 0.96547 1.21924 1.03043 1.01427 0.93556 0.88342 0.89946 0.85853 0.74317 0.88829 0.87694 0.93003 0.84826 0.90010 0.87049 0.91858 0.91985 0.94077 0.92385 0.92897 0.93629 0.87927 0.91179 0.89655 0.96287 0.91385 0.90437 0.90119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 10.32 71.24 0.74 -1.94 16 2 C 0.51 13.59 6.60 87.66 0.58 14.17 16 3 O -0.59 -22.45 13.87 12.41 0.17 -22.28 16 4 N -0.70 -14.83 4.24 -426.33 -1.81 -16.63 16 5 C 0.17 4.05 0.19 2.86 0.00 4.05 16 6 C -0.18 -3.76 7.76 71.98 0.56 -3.20 16 7 C 0.51 18.49 4.73 87.66 0.41 18.90 16 8 O -0.58 -27.15 14.42 12.40 0.18 -26.98 16 9 N -0.61 -22.09 2.97 -819.73 -2.43 -24.52 16 10 C 0.08 2.12 3.87 86.22 0.33 2.46 16 11 C -0.13 -3.64 5.92 30.53 0.18 -3.46 16 12 C -0.12 -4.77 4.66 30.62 0.14 -4.62 16 13 C 0.01 0.66 1.84 -11.47 -0.02 0.64 16 14 H 0.01 0.71 7.20 -2.39 -0.02 0.69 16 15 C -0.53 -31.55 9.14 25.60 0.23 -31.32 16 16 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 17 C 0.01 0.75 5.45 84.66 0.46 1.21 16 18 N -0.95 -60.96 13.96 21.45 0.30 -60.66 16 19 Si 0.96 45.23 24.39 68.60 1.67 46.90 16 20 H -0.25 -10.88 6.86 99.48 0.68 -10.19 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 23 C 0.14 6.56 5.67 86.36 0.49 7.05 16 24 C -0.11 -1.72 1.94 -10.79 -0.02 -1.74 16 25 C -0.15 -2.75 8.78 71.98 0.63 -2.12 16 26 C -0.14 -1.12 8.41 71.98 0.61 -0.52 16 27 H 0.10 1.42 8.14 -2.38 -0.02 1.40 16 28 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 29 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.42 5.59 6.18 -92.71 -0.57 5.02 16 31 H 0.09 1.72 4.30 -2.39 -0.01 1.71 16 32 H 0.10 1.40 6.19 -2.39 -0.01 1.39 16 33 H 0.05 1.48 6.01 -2.39 -0.01 1.47 16 34 H 0.13 2.38 2.70 -2.38 -0.01 2.38 16 35 H 0.08 1.91 7.97 -2.39 -0.02 1.89 16 36 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.06 1.73 8.09 -2.39 -0.02 1.71 16 38 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 39 H 0.04 1.69 3.27 -2.39 -0.01 1.68 16 40 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 41 H 0.05 2.47 8.14 -2.38 -0.02 2.45 16 42 H 0.05 2.41 7.00 -2.39 -0.02 2.40 16 43 H 0.10 1.66 4.91 -2.39 -0.01 1.65 16 44 H 0.07 1.04 6.57 -2.39 -0.02 1.02 16 45 H 0.08 1.18 8.14 -2.39 -0.02 1.17 16 46 H 0.02 0.51 7.40 -2.39 -0.02 0.49 16 47 H 0.07 0.42 7.07 -2.39 -0.02 0.40 16 48 H 0.08 0.46 6.60 -2.39 -0.02 0.45 16 49 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 Total: -1.00 -88.68 352.46 3.72 -84.96 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: 0.31 Total: 19.64 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: 5.32 Total: -0.44 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -3.94 Total: -101.81 kcal Atomic # 8 Polarization: -49.61 SS G_CDS: 0.35 Total: -49.26 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 1.67 Total: 46.90 kcal Total: -88.68 3.72 -84.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745367.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.970 kcal (2) G-P(sol) polarization free energy of solvation -88.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds