Wall clock time and date at job start Fri Apr 10 2020 22:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 119.99920 * 2 1 4 4 N 1.34780 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00097 * 185.05759 * 4 2 1 6 6 C 1.53004 * 109.47044 * 60.65291 * 5 4 2 7 7 C 1.50700 * 109.47019 * 300.65608 * 5 4 2 8 8 O 1.21284 * 120.00072 * 148.83485 * 7 5 4 9 9 N 1.34778 * 120.00029 * 328.83516 * 7 5 4 10 10 C 1.46929 * 120.62856 * 173.30753 * 9 7 5 11 11 C 1.53193 * 108.77296 * 126.41594 * 10 9 7 12 12 C 1.53038 * 109.31440 * 54.63265 * 11 10 9 13 13 C 1.53041 * 109.53883 * 298.63487 * 12 11 10 14 14 H 1.09004 * 109.49525 * 301.37975 * 13 12 11 15 15 C 1.50699 * 109.49885 * 181.31796 * 13 12 11 16 16 H 1.07999 * 119.99759 * 245.56548 * 15 13 12 17 17 C 1.37877 * 119.99957 * 65.28697 * 15 13 12 18 18 N 1.31513 * 120.00110 * 356.22562 * 17 15 13 19 19 Si 1.86805 * 119.99887 * 176.21780 * 17 15 13 20 20 H 1.48502 * 109.46635 * 94.99984 * 19 17 15 21 21 H 1.48501 * 109.47028 * 214.99767 * 19 17 15 22 22 H 1.48500 * 109.47104 * 334.99995 * 19 17 15 23 23 C 1.46919 * 120.63019 * 353.32827 * 9 7 5 24 24 C 1.53003 * 109.47288 * 180.65513 * 5 4 2 25 25 C 1.52996 * 109.46758 * 305.98868 * 24 5 4 26 26 C 1.52995 * 109.46824 * 65.98936 * 24 5 4 27 27 H 1.08996 * 109.47757 * 270.00262 * 1 2 3 28 28 H 1.09005 * 109.46954 * 30.00489 * 1 2 3 29 29 H 1.09006 * 109.47212 * 150.00023 * 1 2 3 30 30 H 0.97002 * 119.99746 * 5.05920 * 4 2 1 31 31 H 1.08993 * 109.47181 * 300.00024 * 6 5 4 32 32 H 1.09001 * 109.47025 * 60.00195 * 6 5 4 33 33 H 1.08999 * 109.47005 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.58706 * 6.62547 * 10 9 7 35 35 H 1.09001 * 109.70071 * 246.26771 * 10 9 7 36 36 H 1.08998 * 109.49610 * 294.67845 * 11 10 9 37 37 H 1.08996 * 109.52291 * 174.60119 * 11 10 9 38 38 H 1.09002 * 109.46183 * 178.61245 * 12 11 10 39 39 H 1.09001 * 109.45741 * 58.65732 * 12 11 10 40 40 H 0.97005 * 120.00119 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58739 * 113.80212 * 23 9 7 42 42 H 1.09004 * 109.59025 * 353.37551 * 23 9 7 43 43 H 1.09001 * 109.46742 * 185.98773 * 24 5 4 44 44 H 1.09001 * 109.46648 * 184.76996 * 25 24 5 45 45 H 1.08996 * 109.47462 * 304.77294 * 25 24 5 46 46 H 1.09001 * 109.47132 * 64.77497 * 25 24 5 47 47 H 1.09003 * 109.47418 * 51.71298 * 26 24 5 48 48 H 1.09003 * 109.46683 * 171.71068 * 26 24 5 49 49 H 1.08995 * 109.47356 * 291.70824 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6416 -1.1697 0.1124 6 6 4.0529 -0.5191 1.4347 7 6 4.2345 -0.3934 -1.0352 8 8 5.2767 0.2087 -0.8858 9 7 3.6067 -0.3683 -2.2276 10 6 4.0911 0.4985 -3.3105 11 6 4.3089 -0.3541 -4.5645 12 6 3.0192 -1.1095 -4.8932 13 6 2.6612 -2.0404 -3.7324 14 1 3.4803 -2.7387 -3.5602 15 6 1.4090 -2.8075 -4.0707 16 1 0.5060 -2.6455 -3.5008 17 6 1.4146 -3.7120 -5.1113 18 7 2.4897 -3.8513 -5.8557 19 14 -0.1051 -4.7396 -5.4638 20 1 -0.9192 -4.0754 -6.5133 21 1 0.3064 -6.0864 -5.9350 22 1 -0.9105 -4.8738 -4.2234 23 6 2.4248 -1.2069 -2.4690 24 6 4.1538 -2.6109 0.0719 25 6 3.4393 -3.4362 1.1439 26 6 3.8738 -3.2131 -1.3064 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6987 -2.0057 -0.0732 31 1 3.6880 0.5076 1.4635 32 1 3.6240 -1.0805 2.2647 33 1 5.1397 -0.5205 1.5177 34 1 5.0329 0.9609 -3.0149 35 1 3.3532 1.2732 -3.5190 36 1 5.1127 -1.0678 -4.3840 37 1 4.5762 0.2909 -5.4015 38 1 3.1639 -1.6979 -5.7993 39 1 2.2102 -0.3959 -5.0493 40 1 2.4938 -4.4879 -6.5876 41 1 1.5491 -0.5729 -2.6082 42 1 2.2670 -1.8698 -1.6182 43 1 5.2272 -2.6204 0.2614 44 1 3.8635 -4.4399 1.1723 45 1 3.5684 -2.9595 2.1156 46 1 2.3770 -3.4973 0.9074 47 1 4.2571 -2.5464 -2.0789 48 1 4.3659 -4.1824 -1.3861 49 1 2.7990 -3.3395 -1.4361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824745369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:50 Heat of formation + Delta-G solvation = -50.902873 kcal Electronic energy + Delta-G solvation = -29643.683836 eV Core-core repulsion = 25992.734074 eV Total energy + Delta-G solvation = -3650.949762 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.32248 -38.62253 -36.97016 -36.59275 -33.37223 -32.95936 -31.50453 -30.83116 -30.13841 -28.69025 -27.08995 -25.26208 -24.99467 -23.32155 -21.73653 -20.90017 -20.75809 -19.18572 -18.45978 -17.11041 -17.01762 -16.05376 -15.63531 -15.07242 -14.82912 -14.64034 -14.32327 -14.30381 -13.77535 -13.67042 -13.20649 -13.01106 -12.87415 -12.74615 -12.61732 -12.49388 -12.30797 -12.03860 -11.90321 -11.82045 -11.71894 -11.46208 -11.07072 -10.93121 -10.84233 -10.81320 -10.68555 -10.55065 -10.19914 -9.99445 -9.73374 -9.67606 -9.60817 -9.47075 -8.85985 -8.47041 -8.24276 -7.75671 -6.10138 -4.17479 2.77381 3.01285 3.21364 3.30077 3.30121 3.38612 3.65466 4.33206 4.68865 4.80532 4.91577 4.99413 5.19929 5.22937 5.32556 5.39234 5.45500 5.53611 5.69862 5.76150 5.81802 5.83186 5.89304 5.90877 5.93786 5.98259 6.05538 6.15228 6.20900 6.31684 6.36068 6.40196 6.41558 6.51734 6.58845 6.62050 6.78703 6.82004 7.05382 7.19662 7.36291 7.56663 7.61303 7.86226 7.96556 8.12074 8.30399 8.35689 8.74710 8.87153 9.47732 10.95755 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.006026 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.559571 B = 4645.123350 C = 5031.438450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.510 3.490 3 O -0.534 6.534 4 N -0.718 5.718 5 C 0.167 3.833 6 C -0.147 4.147 7 C 0.528 3.472 8 O -0.559 6.559 9 N -0.591 5.591 10 C 0.115 3.885 11 C -0.133 4.133 12 C -0.111 4.111 13 C 0.032 3.968 14 H 0.045 0.955 15 C -0.516 4.516 16 H 0.054 0.946 17 C 0.067 3.933 18 N -0.884 5.884 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C 0.086 3.914 24 C -0.097 4.097 25 C -0.146 4.146 26 C -0.172 4.172 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.406 0.594 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.073 0.927 34 H 0.077 0.923 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.054 0.946 38 H 0.088 0.912 39 H 0.033 0.967 40 H 0.261 0.739 41 H 0.044 0.956 42 H 0.103 0.897 43 H 0.088 0.912 44 H 0.062 0.938 45 H 0.059 0.941 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.822 1.131 11.731 11.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.298 3.702 3 O -0.410 6.410 4 N -0.376 5.376 5 C 0.078 3.922 6 C -0.205 4.205 7 C 0.314 3.686 8 O -0.438 6.438 9 N -0.321 5.321 10 C -0.007 4.007 11 C -0.171 4.171 12 C -0.149 4.149 13 C 0.013 3.987 14 H 0.062 0.938 15 C -0.555 4.555 16 H 0.073 0.927 17 C -0.136 4.136 18 N -0.522 5.522 19 Si 0.716 3.284 20 H -0.209 1.209 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.035 4.035 24 C -0.116 4.116 25 C -0.203 4.203 26 C -0.229 4.229 27 H 0.109 0.891 28 H 0.110 0.890 29 H 0.102 0.898 30 H 0.246 0.754 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.106 0.894 39 H 0.052 0.948 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.120 0.880 43 H 0.106 0.894 44 H 0.081 0.919 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.100 0.900 48 H 0.076 0.924 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.785 2.112 11.657 11.872 hybrid contribution -1.197 -1.002 -0.597 1.671 sum -1.982 1.110 11.059 11.290 Atomic orbital electron populations 1.21895 0.91681 1.05330 1.04347 1.20758 0.90586 0.83481 0.75424 1.90726 1.70449 1.31239 1.48622 1.46640 1.06589 1.09452 1.74921 1.20554 0.80222 0.96480 0.94968 1.22019 1.02569 1.02040 0.93875 1.20331 0.84193 0.80569 0.83464 1.90606 1.23690 1.46249 1.83234 1.48088 1.30215 1.42283 1.11539 1.21517 0.99481 0.92471 0.87255 1.21990 1.00768 0.98755 0.95632 1.21626 0.92828 0.97339 1.03107 1.19253 0.97704 0.92688 0.89060 0.93751 1.21006 0.96473 1.22078 1.15916 0.92726 1.24925 0.95873 0.96910 0.95861 1.69906 1.27879 1.35602 1.18781 0.86654 0.83306 0.79894 0.78551 1.20860 1.21251 1.19855 1.23090 0.85234 0.93126 1.02089 1.21432 1.01300 0.91107 0.97761 1.21888 1.00371 0.99951 0.98114 1.22670 1.03417 1.01722 0.95113 0.89119 0.88971 0.89765 0.75422 0.90705 0.91887 0.90814 0.90505 0.92630 0.92552 0.92748 0.89392 0.94837 0.92940 0.93733 0.87960 0.89380 0.91854 0.92198 0.92489 0.89965 0.92381 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.31 36.01 0.37 -1.43 16 2 C 0.51 7.40 5.71 -10.98 -0.06 7.33 16 3 O -0.53 -10.02 14.38 5.56 0.08 -9.94 16 4 N -0.72 -9.54 2.44 -48.68 -0.12 -9.66 16 5 C 0.17 2.52 0.34 -132.97 -0.04 2.47 16 6 C -0.15 -2.09 7.77 37.16 0.29 -1.81 16 7 C 0.53 10.22 4.18 -10.99 -0.05 10.18 16 8 O -0.56 -12.44 15.58 5.55 0.09 -12.35 16 9 N -0.59 -11.46 2.28 -172.77 -0.39 -11.86 16 10 C 0.12 2.25 6.44 -3.71 -0.02 2.22 16 11 C -0.13 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.11 -2.48 5.01 -26.69 -0.13 -2.62 16 13 C 0.03 0.71 1.42 -91.65 -0.13 0.58 16 14 H 0.04 1.07 5.61 -51.93 -0.29 0.78 16 15 C -0.52 -12.47 8.50 -34.44 -0.29 -12.76 16 16 H 0.05 1.27 7.75 -52.49 -0.41 0.87 16 17 C 0.07 1.68 5.35 -17.82 -0.10 1.59 16 18 N -0.88 -23.51 11.56 55.43 0.64 -22.87 16 19 Si 0.89 19.59 29.54 -169.99 -5.02 14.57 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 21 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 22 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 23 C 0.09 1.63 2.68 -3.72 -0.01 1.62 16 24 C -0.10 -1.28 2.26 -90.62 -0.20 -1.49 16 25 C -0.15 -1.45 8.73 37.16 0.32 -1.13 16 26 C -0.17 -2.69 6.43 37.16 0.24 -2.45 16 27 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.41 4.55 5.58 -40.82 -0.23 4.32 16 31 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 32 H 0.06 0.72 6.50 -51.93 -0.34 0.38 16 33 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 34 H 0.08 1.52 7.00 -51.93 -0.36 1.16 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.09 2.22 6.33 -51.93 -0.33 1.89 16 39 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 41 H 0.04 0.88 7.75 -51.93 -0.40 0.47 16 42 H 0.10 1.70 1.46 -55.65 -0.08 1.62 16 43 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.54 6.39 -51.93 -0.33 0.21 16 46 H 0.06 0.52 6.67 -51.93 -0.35 0.17 16 47 H 0.08 1.54 3.75 -51.93 -0.19 1.35 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.08 1.21 5.62 -51.93 -0.29 0.92 16 LS Contribution 352.70 15.07 5.32 5.32 Total: -1.00 -30.62 352.70 -7.10 -37.72 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -7.71 Total: 9.54 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 0.02 Total: -0.47 kcal Atomic # 7 Polarization: -44.52 SS G_CDS: 0.13 Total: -44.39 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: 0.17 Total: -22.29 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.62 -7.10 -37.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.183 kcal (2) G-P(sol) polarization free energy of solvation -30.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds