Wall clock time and date at job start Fri Apr 10 2020 22:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21272 * 119.99920 * 2 1 4 4 N 1.34780 * 119.99951 * 179.97438 * 2 1 3 5 5 C 1.46492 * 120.00097 * 185.05759 * 4 2 1 6 6 C 1.53004 * 109.47044 * 60.65291 * 5 4 2 7 7 C 1.50700 * 109.47019 * 300.65608 * 5 4 2 8 8 O 1.21284 * 120.00072 * 148.83485 * 7 5 4 9 9 N 1.34778 * 120.00029 * 328.83516 * 7 5 4 10 10 C 1.46929 * 120.62856 * 173.30753 * 9 7 5 11 11 C 1.53193 * 108.77296 * 126.41594 * 10 9 7 12 12 C 1.53038 * 109.31440 * 54.63265 * 11 10 9 13 13 C 1.53041 * 109.53883 * 298.63487 * 12 11 10 14 14 H 1.09004 * 109.49525 * 301.37975 * 13 12 11 15 15 C 1.50699 * 109.49885 * 181.31796 * 13 12 11 16 16 H 1.07999 * 119.99759 * 245.56548 * 15 13 12 17 17 C 1.37877 * 119.99957 * 65.28697 * 15 13 12 18 18 N 1.31513 * 120.00110 * 356.22562 * 17 15 13 19 19 Si 1.86805 * 119.99887 * 176.21780 * 17 15 13 20 20 H 1.48502 * 109.46635 * 94.99984 * 19 17 15 21 21 H 1.48501 * 109.47028 * 214.99767 * 19 17 15 22 22 H 1.48500 * 109.47104 * 334.99995 * 19 17 15 23 23 C 1.46919 * 120.63019 * 353.32827 * 9 7 5 24 24 C 1.53003 * 109.47288 * 180.65513 * 5 4 2 25 25 C 1.52996 * 109.46758 * 305.98868 * 24 5 4 26 26 C 1.52995 * 109.46824 * 65.98936 * 24 5 4 27 27 H 1.08996 * 109.47757 * 270.00262 * 1 2 3 28 28 H 1.09005 * 109.46954 * 30.00489 * 1 2 3 29 29 H 1.09006 * 109.47212 * 150.00023 * 1 2 3 30 30 H 0.97002 * 119.99746 * 5.05920 * 4 2 1 31 31 H 1.08993 * 109.47181 * 300.00024 * 6 5 4 32 32 H 1.09001 * 109.47025 * 60.00195 * 6 5 4 33 33 H 1.08999 * 109.47005 * 180.02562 * 6 5 4 34 34 H 1.08996 * 109.58706 * 6.62547 * 10 9 7 35 35 H 1.09001 * 109.70071 * 246.26771 * 10 9 7 36 36 H 1.08998 * 109.49610 * 294.67845 * 11 10 9 37 37 H 1.08996 * 109.52291 * 174.60119 * 11 10 9 38 38 H 1.09002 * 109.46183 * 178.61245 * 12 11 10 39 39 H 1.09001 * 109.45741 * 58.65732 * 12 11 10 40 40 H 0.97005 * 120.00119 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58739 * 113.80212 * 23 9 7 42 42 H 1.09004 * 109.59025 * 353.37551 * 23 9 7 43 43 H 1.09001 * 109.46742 * 185.98773 * 24 5 4 44 44 H 1.09001 * 109.46648 * 184.76996 * 25 24 5 45 45 H 1.08996 * 109.47462 * 304.77294 * 25 24 5 46 46 H 1.09001 * 109.47132 * 64.77497 * 25 24 5 47 47 H 1.09003 * 109.47418 * 51.71298 * 26 24 5 48 48 H 1.09003 * 109.46683 * 171.71068 * 26 24 5 49 49 H 1.08995 * 109.47356 * 291.70824 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6416 -1.1697 0.1124 6 6 4.0529 -0.5191 1.4347 7 6 4.2345 -0.3934 -1.0352 8 8 5.2767 0.2087 -0.8858 9 7 3.6067 -0.3683 -2.2276 10 6 4.0911 0.4985 -3.3105 11 6 4.3089 -0.3541 -4.5645 12 6 3.0192 -1.1095 -4.8932 13 6 2.6612 -2.0404 -3.7324 14 1 3.4803 -2.7387 -3.5602 15 6 1.4090 -2.8075 -4.0707 16 1 0.5060 -2.6455 -3.5008 17 6 1.4146 -3.7120 -5.1113 18 7 2.4897 -3.8513 -5.8557 19 14 -0.1051 -4.7396 -5.4638 20 1 -0.9192 -4.0754 -6.5133 21 1 0.3064 -6.0864 -5.9350 22 1 -0.9105 -4.8738 -4.2234 23 6 2.4248 -1.2069 -2.4690 24 6 4.1538 -2.6109 0.0719 25 6 3.4393 -3.4362 1.1439 26 6 3.8738 -3.2131 -1.3064 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8900 -0.5139 29 1 -0.3634 -0.8900 -0.5139 30 1 1.6987 -2.0057 -0.0732 31 1 3.6880 0.5076 1.4635 32 1 3.6240 -1.0805 2.2647 33 1 5.1397 -0.5205 1.5177 34 1 5.0329 0.9609 -3.0149 35 1 3.3532 1.2732 -3.5190 36 1 5.1127 -1.0678 -4.3840 37 1 4.5762 0.2909 -5.4015 38 1 3.1639 -1.6979 -5.7993 39 1 2.2102 -0.3959 -5.0493 40 1 2.4938 -4.4879 -6.5876 41 1 1.5491 -0.5729 -2.6082 42 1 2.2670 -1.8698 -1.6182 43 1 5.2272 -2.6204 0.2614 44 1 3.8635 -4.4399 1.1723 45 1 3.5684 -2.9595 2.1156 46 1 2.3770 -3.4973 0.9074 47 1 4.2571 -2.5464 -2.0789 48 1 4.3659 -4.1824 -1.3861 49 1 2.7990 -3.3395 -1.4361 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824745369.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:49 Heat of formation + Delta-G solvation = -69.302924 kcal Electronic energy + Delta-G solvation = -29644.481722 eV Core-core repulsion = 25992.734074 eV Total energy + Delta-G solvation = -3651.747648 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.65420 -39.98837 -38.55435 -37.93957 -35.13429 -34.17450 -33.15295 -32.21451 -31.58946 -29.70323 -28.17649 -26.93303 -26.64819 -24.67994 -23.33266 -22.27800 -22.01501 -20.66568 -19.92705 -18.63796 -18.24147 -17.72072 -17.17142 -16.56759 -16.17324 -16.06309 -15.75927 -15.40504 -15.23566 -15.11863 -14.64659 -14.52265 -14.32307 -14.22757 -13.84442 -13.65671 -13.51066 -13.30996 -13.22845 -12.87765 -12.86452 -12.79442 -12.76599 -12.57113 -12.45677 -12.11517 -11.98431 -11.84944 -11.77573 -11.66239 -11.44014 -11.29311 -11.02073 -10.79389 -10.65601 -10.35914 -9.62958 -9.39048 -8.01964 -6.14573 1.47432 1.50845 1.57023 1.58676 1.68170 2.12427 2.26298 2.50894 3.27675 3.45632 3.57258 3.81014 3.98027 4.05177 4.11487 4.24912 4.29728 4.37286 4.48802 4.52430 4.55275 4.58009 4.67678 4.72161 4.77510 4.78549 4.83460 4.89066 4.90061 5.01790 5.06278 5.11317 5.13935 5.17452 5.24512 5.29151 5.37978 5.45224 5.47871 5.50501 5.65423 5.69192 6.00333 6.09925 6.39520 6.48920 6.61016 6.97411 7.19820 7.28420 7.53720 9.03138 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.006026 C = 0.005564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.559571 B = 4645.123350 C = 5031.438450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.504 3.496 3 O -0.581 6.581 4 N -0.708 5.708 5 C 0.169 3.831 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.595 6.595 9 N -0.595 5.595 10 C 0.115 3.885 11 C -0.121 4.121 12 C -0.107 4.107 13 C 0.034 3.966 14 H 0.023 0.977 15 C -0.519 4.519 16 H 0.066 0.934 17 C 0.018 3.982 18 N -0.917 5.917 19 Si 0.947 3.053 20 H -0.287 1.287 21 H -0.293 1.293 22 H -0.255 1.255 23 C 0.101 3.899 24 C -0.089 4.089 25 C -0.141 4.141 26 C -0.168 4.168 27 H 0.121 0.879 28 H 0.087 0.913 29 H 0.102 0.898 30 H 0.419 0.581 31 H 0.048 0.952 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.073 0.927 38 H 0.057 0.943 39 H 0.028 0.972 40 H 0.257 0.743 41 H 0.040 0.960 42 H 0.128 0.872 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.895 -0.003 13.852 14.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.293 3.707 3 O -0.460 6.460 4 N -0.367 5.367 5 C 0.080 3.920 6 C -0.197 4.197 7 C 0.306 3.694 8 O -0.476 6.476 9 N -0.325 5.325 10 C -0.008 4.008 11 C -0.159 4.159 12 C -0.145 4.145 13 C 0.015 3.985 14 H 0.041 0.959 15 C -0.558 4.558 16 H 0.084 0.916 17 C -0.181 4.181 18 N -0.556 5.556 19 Si 0.773 3.227 20 H -0.214 1.214 21 H -0.219 1.219 22 H -0.179 1.179 23 C -0.020 4.020 24 C -0.108 4.108 25 C -0.198 4.198 26 C -0.225 4.225 27 H 0.139 0.861 28 H 0.106 0.894 29 H 0.121 0.879 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.059 0.941 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.093 0.907 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.898 0.949 13.794 14.127 hybrid contribution -0.496 -0.608 -1.304 1.522 sum -3.394 0.341 12.490 12.947 Atomic orbital electron populations 1.21938 0.88124 1.05975 1.06523 1.21574 0.92264 0.82792 0.74022 1.90720 1.71701 1.32914 1.50696 1.46582 1.05801 1.10039 1.74326 1.20528 0.81178 0.96944 0.93374 1.21966 1.02256 1.01007 0.94464 1.21220 0.83720 0.80232 0.84207 1.90575 1.25316 1.47875 1.83872 1.48182 1.30344 1.42161 1.11796 1.21473 0.99434 0.92623 0.87248 1.21847 0.98944 0.98491 0.96606 1.21504 0.93857 0.97088 1.02091 1.19176 0.96451 0.92571 0.90337 0.95889 1.21372 0.97291 1.21612 1.15486 0.91580 1.25643 0.98215 0.98238 0.95994 1.70056 1.29843 1.36352 1.19388 0.85718 0.80314 0.77875 0.78760 1.21368 1.21930 1.17865 1.22980 0.84711 0.92831 1.01505 1.21400 1.01692 0.90095 0.97584 1.21888 1.00718 0.99908 0.97283 1.22559 1.03022 1.01316 0.95602 0.86112 0.89439 0.87935 0.73866 0.93242 0.88293 0.91532 0.91097 0.92111 0.93958 0.90844 0.92408 0.95276 0.93404 0.94132 0.85503 0.89691 0.90672 0.90563 0.91124 0.93489 0.91859 0.90616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.31 71.24 0.73 -2.18 16 2 C 0.50 13.60 5.71 87.66 0.50 14.10 16 3 O -0.58 -21.46 14.38 -3.00 -0.04 -21.50 16 4 N -0.71 -17.12 2.44 -426.33 -1.04 -18.16 16 5 C 0.17 4.87 0.34 2.86 0.00 4.87 16 6 C -0.14 -3.74 7.77 71.98 0.56 -3.18 16 7 C 0.52 20.17 4.18 87.66 0.37 20.53 16 8 O -0.60 -27.12 15.58 -3.04 -0.05 -27.17 16 9 N -0.59 -23.28 2.28 -818.91 -1.86 -25.14 16 10 C 0.12 4.58 6.44 86.36 0.56 5.13 16 11 C -0.12 -4.87 6.08 30.67 0.19 -4.68 16 12 C -0.11 -4.91 5.01 30.62 0.15 -4.75 16 13 C 0.03 1.50 1.42 -11.46 -0.02 1.49 16 14 H 0.02 1.14 5.61 -2.38 -0.01 1.13 16 15 C -0.52 -24.66 8.50 25.60 0.22 -24.44 16 16 H 0.07 2.93 7.75 -2.91 -0.02 2.91 16 17 C 0.02 0.91 5.35 84.65 0.45 1.36 16 18 N -0.92 -49.66 11.56 21.45 0.25 -49.41 16 19 Si 0.95 39.53 29.54 68.60 2.03 41.56 16 20 H -0.29 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 23 C 0.10 3.76 2.68 86.36 0.23 3.99 16 24 C -0.09 -2.17 2.26 -10.80 -0.02 -2.19 16 25 C -0.14 -2.24 8.73 71.98 0.63 -1.62 16 26 C -0.17 -5.08 6.43 71.98 0.46 -4.61 16 27 H 0.12 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.09 1.67 8.14 -2.38 -0.02 1.65 16 29 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 30 H 0.42 7.87 5.58 -92.71 -0.52 7.36 16 31 H 0.05 1.61 6.39 -2.39 -0.02 1.59 16 32 H 0.10 1.91 6.50 -2.39 -0.02 1.89 16 33 H 0.07 1.88 7.86 -2.39 -0.02 1.86 16 34 H 0.07 2.90 7.00 -2.39 -0.02 2.88 16 35 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 38 H 0.06 3.01 6.33 -2.39 -0.02 2.99 16 39 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.26 13.49 8.31 -92.70 -0.77 12.72 16 41 H 0.04 1.55 7.75 -2.39 -0.02 1.53 16 42 H 0.13 4.02 1.46 -9.74 -0.01 4.01 16 43 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.01 6.39 -2.39 -0.02 0.99 16 46 H 0.07 0.95 6.67 -2.39 -0.02 0.93 16 47 H 0.05 1.77 3.75 -2.39 -0.01 1.76 16 48 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 49 H 0.08 2.25 5.62 -2.39 -0.01 2.24 16 Total: -1.00 -68.74 352.70 4.72 -64.01 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.44 Total: 32.01 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.01 Total: 3.81 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -2.66 Total: -92.72 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.09 Total: -48.67 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -68.74 4.72 -64.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745369.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.290 kcal (2) G-P(sol) polarization free energy of solvation -68.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds