Wall clock time and date at job start Fri Apr 10 2020 22:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 120.00296 * 2 1 4 4 N 1.34777 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00399 * 185.40567 * 4 2 1 6 6 C 1.52997 * 109.47299 * 301.83986 * 5 4 2 7 7 C 1.50703 * 109.46614 * 61.83815 * 5 4 2 8 8 O 1.21281 * 120.00190 * 353.88758 * 7 5 4 9 9 N 1.34776 * 119.99884 * 173.89274 * 7 5 4 10 10 C 1.46922 * 120.63096 * 5.31337 * 9 7 5 11 11 C 1.53192 * 108.77749 * 126.37180 * 10 9 7 12 12 C 1.53048 * 109.31159 * 54.63583 * 11 10 9 13 13 C 1.53040 * 109.53662 * 298.63890 * 12 11 10 14 14 H 1.09006 * 109.49730 * 301.38021 * 13 12 11 15 15 C 1.50697 * 109.49727 * 181.31559 * 13 12 11 16 16 H 1.08004 * 120.00161 * 239.99965 * 15 13 12 17 17 C 1.37882 * 119.99945 * 59.99917 * 15 13 12 18 18 N 1.31509 * 119.99904 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47029 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46835 * 119.99743 * 19 17 15 22 22 H 1.48499 * 109.46891 * 239.99663 * 19 17 15 23 23 C 1.46923 * 120.63162 * 185.03963 * 9 7 5 24 24 C 1.52998 * 109.47309 * 181.83400 * 5 4 2 25 25 C 1.52993 * 109.47329 * 304.29039 * 24 5 4 26 26 C 1.53005 * 109.46783 * 64.28864 * 24 5 4 27 27 H 1.09004 * 109.47530 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00084 * 1 2 3 29 29 H 1.09005 * 109.47333 * 60.00267 * 1 2 3 30 30 H 0.97007 * 119.99953 * 5.41738 * 4 2 1 31 31 H 1.08998 * 109.46966 * 292.73800 * 6 5 4 32 32 H 1.09003 * 109.47292 * 52.72960 * 6 5 4 33 33 H 1.08999 * 109.47401 * 172.72968 * 6 5 4 34 34 H 1.08998 * 109.59043 * 246.16144 * 10 9 7 35 35 H 1.09008 * 109.58713 * 6.58782 * 10 9 7 36 36 H 1.09001 * 109.50009 * 174.58416 * 11 10 9 37 37 H 1.09003 * 109.49773 * 294.68777 * 11 10 9 38 38 H 1.09000 * 109.45674 * 58.65083 * 12 11 10 39 39 H 1.08994 * 109.45843 * 178.62983 * 12 11 10 40 40 H 0.97003 * 120.00203 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58707 * 353.41551 * 23 9 7 42 42 H 1.09000 * 109.58901 * 113.83917 * 23 9 7 43 43 H 1.09002 * 109.46818 * 184.28159 * 24 5 4 44 44 H 1.08999 * 109.46906 * 179.97438 * 25 24 5 45 45 H 1.09005 * 109.46996 * 299.99504 * 25 24 5 46 46 H 1.09000 * 109.47162 * 59.99706 * 25 24 5 47 47 H 1.08999 * 109.47224 * 56.21798 * 26 24 5 48 48 H 1.08998 * 109.47040 * 176.21948 * 26 24 5 49 49 H 1.09003 * 109.46915 * 296.21755 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6410 -1.1700 0.1200 6 6 4.2479 -0.3537 -1.0228 7 6 4.0381 -0.5596 1.4394 8 8 3.1953 -0.0613 2.1552 9 7 5.3298 -0.5672 1.8239 10 6 6.3771 -1.0612 0.9196 11 6 7.4585 0.0153 0.7829 12 6 7.9624 0.4060 2.1743 13 6 6.8063 0.9839 2.9937 14 1 6.3934 1.8515 2.4787 15 6 7.3103 1.3981 4.3521 16 1 6.8947 0.9493 5.2422 17 6 8.3021 2.3500 4.4586 18 7 8.8086 2.8961 3.3747 19 14 8.9264 2.8639 6.1425 20 1 8.1995 2.1059 7.1925 21 1 10.3798 2.5752 6.2409 22 1 8.6967 4.3187 6.3328 23 6 5.7181 -0.0763 3.1531 24 6 4.1558 -2.6090 0.0484 25 6 3.4679 -3.4510 1.1248 26 6 3.8461 -3.1933 -1.3314 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6991 -2.0055 -0.0784 31 1 4.0701 -0.8651 -1.9688 32 1 3.7849 0.6327 -1.0505 33 1 5.3208 -0.2471 -0.8633 34 1 6.8162 -1.9701 1.3308 35 1 5.9454 -1.2717 -0.0590 36 1 8.2874 -0.3746 0.1921 37 1 7.0392 0.8916 0.2886 38 1 8.3590 -0.4758 2.6776 39 1 8.7491 1.1542 2.0786 40 1 9.5061 3.5660 3.4496 41 1 4.8518 0.3628 3.6480 42 1 6.1024 -0.9033 3.7503 43 1 5.2332 -2.6180 0.2133 44 1 3.8344 -4.4762 1.0734 45 1 3.6886 -3.0347 2.1078 46 1 2.3905 -3.4419 0.9599 47 1 4.2800 -2.5557 -2.1016 48 1 4.2716 -4.1940 -1.4059 49 1 2.7662 -3.2464 -1.4694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000824745371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:52 Heat of formation + Delta-G solvation = -60.972641 kcal Electronic energy + Delta-G solvation = -28581.610297 eV Core-core repulsion = 24930.223877 eV Total energy + Delta-G solvation = -3651.386420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.08930 -38.80089 -36.95372 -36.53364 -33.57938 -32.86841 -31.31547 -31.10845 -30.06173 -28.79575 -27.42118 -25.15508 -25.11271 -23.62411 -21.82570 -20.95627 -20.64912 -19.53776 -18.31904 -17.10391 -16.55547 -16.17871 -15.71576 -15.03609 -14.99311 -14.64112 -14.52940 -14.46882 -14.00728 -13.56515 -13.45516 -13.30387 -12.92140 -12.78015 -12.67789 -12.60261 -12.42760 -12.09890 -12.06519 -12.04622 -11.78422 -11.47301 -11.24024 -11.06897 -10.96126 -10.89175 -10.69836 -10.58245 -10.19961 -9.87017 -9.77650 -9.50469 -9.43975 -9.30469 -8.85842 -8.62109 -8.34623 -7.81046 -5.97874 -4.04838 2.81961 3.11541 3.23899 3.31126 3.39262 3.43480 3.69555 4.44533 4.45780 4.59759 4.67425 4.88016 5.02167 5.12879 5.24335 5.26653 5.31870 5.34013 5.40341 5.44927 5.56568 5.62856 5.63171 5.67521 5.80525 5.81043 5.82285 5.84682 6.08013 6.08586 6.12409 6.35806 6.42044 6.43342 6.52328 6.56640 6.70647 6.87814 7.04881 7.21546 7.38043 7.61722 7.73452 7.98141 8.08552 8.12481 8.41490 8.45385 8.76117 8.99204 9.59780 11.07655 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.004213 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.063296 B = 6644.361088 C = 7200.301706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.518 3.482 3 O -0.525 6.525 4 N -0.713 5.713 5 C 0.168 3.832 6 C -0.186 4.186 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.600 5.600 10 C 0.087 3.913 11 C -0.137 4.137 12 C -0.111 4.111 13 C 0.039 3.961 14 H 0.029 0.971 15 C -0.512 4.512 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.888 5.888 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C 0.120 3.880 24 C -0.116 4.116 25 C -0.148 4.148 26 C -0.149 4.149 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.398 0.602 31 H 0.068 0.932 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.035 0.965 39 H 0.095 0.905 40 H 0.259 0.741 41 H 0.076 0.924 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.053 0.947 47 H 0.065 0.935 48 H 0.061 0.939 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 -14.814 -12.009 21.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.305 3.695 3 O -0.400 6.400 4 N -0.367 5.367 5 C 0.078 3.922 6 C -0.243 4.243 7 C 0.298 3.702 8 O -0.409 6.409 9 N -0.333 5.333 10 C -0.036 4.036 11 C -0.175 4.175 12 C -0.149 4.149 13 C 0.020 3.980 14 H 0.047 0.953 15 C -0.551 4.551 16 H 0.075 0.925 17 C -0.138 4.138 18 N -0.527 5.527 19 Si 0.720 3.280 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.001 4.001 24 C -0.135 4.135 25 C -0.206 4.206 26 C -0.206 4.206 27 H 0.089 0.911 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.080 0.920 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.053 0.947 39 H 0.113 0.887 40 H 0.069 0.931 41 H 0.095 0.905 42 H 0.071 0.929 43 H 0.124 0.876 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.072 0.928 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -10.648 -13.641 -11.640 20.855 hybrid contribution 0.258 -0.103 0.925 0.966 sum -10.390 -13.744 -10.715 20.289 Atomic orbital electron populations 1.21808 0.92211 1.03596 1.05053 1.20586 0.90219 0.83555 0.75137 1.90698 1.70088 1.31389 1.47823 1.45847 1.05865 1.08926 1.76089 1.20203 0.81649 0.95962 0.94419 1.22714 1.02363 1.02741 0.96476 1.20456 0.82679 0.79621 0.87420 1.90646 1.50023 1.45236 1.55037 1.48131 1.05250 1.62556 1.17339 1.22346 0.89851 0.97423 0.93939 1.22038 0.96785 0.97798 1.00884 1.21610 1.01713 1.00224 0.91318 1.18888 0.90490 0.92573 0.96043 0.95258 1.21113 1.19957 1.22090 0.91936 0.92520 1.24933 0.96428 0.95922 0.96525 1.69884 1.27687 1.27849 1.27295 0.86538 0.78494 0.78448 0.84531 1.19766 1.21067 1.21029 1.21859 0.99729 0.97625 0.80879 1.21845 1.02958 0.91942 0.96752 1.21842 1.00138 0.99735 0.98840 1.21941 1.01726 1.00987 0.95953 0.91114 0.88729 0.89204 0.76626 0.91336 0.89044 0.89926 0.92017 0.89099 0.92471 0.92249 0.94654 0.88654 0.93072 0.90516 0.92891 0.87555 0.91917 0.92103 0.92759 0.91580 0.92045 0.92683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.63 10.39 36.00 0.37 -1.26 16 2 C 0.52 7.62 6.55 -10.99 -0.07 7.55 16 3 O -0.52 -10.47 13.58 -13.04 -0.18 -10.65 16 4 N -0.71 -8.82 4.38 -48.68 -0.21 -9.03 16 5 C 0.17 2.32 0.18 -132.97 -0.02 2.29 16 6 C -0.19 -2.55 7.87 37.16 0.29 -2.26 16 7 C 0.51 9.72 5.01 -10.98 -0.06 9.67 16 8 O -0.53 -12.26 14.04 -13.03 -0.18 -12.45 16 9 N -0.60 -11.40 2.97 -173.03 -0.51 -11.91 16 10 C 0.09 1.35 3.89 -3.71 -0.01 1.34 16 11 C -0.14 -2.47 5.91 -26.61 -0.16 -2.63 16 12 C -0.11 -2.52 4.96 -26.69 -0.13 -2.65 16 13 C 0.04 1.00 2.24 -91.88 -0.21 0.79 16 14 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 15 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 16 H 0.06 1.56 7.75 -52.48 -0.41 1.15 16 17 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.89 -25.49 11.31 55.43 0.63 -24.86 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.12 2.70 5.64 -3.93 -0.02 2.67 16 24 C -0.12 -1.19 1.91 -90.62 -0.17 -1.36 16 25 C -0.15 -1.47 8.78 37.15 0.33 -1.15 16 26 C -0.15 -1.10 8.68 37.16 0.32 -0.78 16 27 H 0.07 0.47 7.92 -51.93 -0.41 0.06 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.40 3.55 6.03 -40.82 -0.25 3.30 16 31 H 0.07 0.73 5.87 -51.93 -0.31 0.43 16 32 H 0.09 1.57 5.68 -51.93 -0.29 1.28 16 33 H 0.08 1.14 4.76 -51.93 -0.25 0.89 16 34 H 0.06 0.87 7.98 -51.93 -0.41 0.45 16 35 H 0.09 1.16 2.71 -51.92 -0.14 1.02 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.16 8.06 -51.93 -0.42 0.74 16 38 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.10 2.47 6.04 -51.93 -0.31 2.15 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.08 1.89 7.00 -51.93 -0.36 1.53 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.11 1.12 4.43 -51.93 -0.23 0.89 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.78 7.36 -51.93 -0.38 0.40 16 46 H 0.05 0.47 6.58 -51.93 -0.34 0.13 16 47 H 0.07 0.49 5.99 -51.93 -0.31 0.18 16 48 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.05 0.36 7.27 -51.93 -0.38 -0.02 16 LS Contribution 357.87 15.07 5.39 5.39 Total: -1.00 -34.64 357.87 -7.74 -42.38 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.72 Total: 5.26 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 0.07 Total: -0.64 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: -0.10 Total: -45.80 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: -0.36 Total: -23.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.64 -7.74 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.596 kcal (2) G-P(sol) polarization free energy of solvation -34.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds