Wall clock time and date at job start Fri Apr 10 2020 22:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 O 1.21283 * 120.00296 * 2 1 4 4 N 1.34777 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.46503 * 120.00399 * 185.40567 * 4 2 1 6 6 C 1.52997 * 109.47299 * 301.83986 * 5 4 2 7 7 C 1.50703 * 109.46614 * 61.83815 * 5 4 2 8 8 O 1.21281 * 120.00190 * 353.88758 * 7 5 4 9 9 N 1.34776 * 119.99884 * 173.89274 * 7 5 4 10 10 C 1.46922 * 120.63096 * 5.31337 * 9 7 5 11 11 C 1.53192 * 108.77749 * 126.37180 * 10 9 7 12 12 C 1.53048 * 109.31159 * 54.63583 * 11 10 9 13 13 C 1.53040 * 109.53662 * 298.63890 * 12 11 10 14 14 H 1.09006 * 109.49730 * 301.38021 * 13 12 11 15 15 C 1.50697 * 109.49727 * 181.31559 * 13 12 11 16 16 H 1.08004 * 120.00161 * 239.99965 * 15 13 12 17 17 C 1.37882 * 119.99945 * 59.99917 * 15 13 12 18 18 N 1.31509 * 119.99904 * 359.97438 * 17 15 13 19 19 Si 1.86801 * 119.99813 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47029 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46835 * 119.99743 * 19 17 15 22 22 H 1.48499 * 109.46891 * 239.99663 * 19 17 15 23 23 C 1.46923 * 120.63162 * 185.03963 * 9 7 5 24 24 C 1.52998 * 109.47309 * 181.83400 * 5 4 2 25 25 C 1.52993 * 109.47329 * 304.29039 * 24 5 4 26 26 C 1.53005 * 109.46783 * 64.28864 * 24 5 4 27 27 H 1.09004 * 109.47530 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47683 * 300.00084 * 1 2 3 29 29 H 1.09005 * 109.47333 * 60.00267 * 1 2 3 30 30 H 0.97007 * 119.99953 * 5.41738 * 4 2 1 31 31 H 1.08998 * 109.46966 * 292.73800 * 6 5 4 32 32 H 1.09003 * 109.47292 * 52.72960 * 6 5 4 33 33 H 1.08999 * 109.47401 * 172.72968 * 6 5 4 34 34 H 1.08998 * 109.59043 * 246.16144 * 10 9 7 35 35 H 1.09008 * 109.58713 * 6.58782 * 10 9 7 36 36 H 1.09001 * 109.50009 * 174.58416 * 11 10 9 37 37 H 1.09003 * 109.49773 * 294.68777 * 11 10 9 38 38 H 1.09000 * 109.45674 * 58.65083 * 12 11 10 39 39 H 1.08994 * 109.45843 * 178.62983 * 12 11 10 40 40 H 0.97003 * 120.00203 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58707 * 353.41551 * 23 9 7 42 42 H 1.09000 * 109.58901 * 113.83917 * 23 9 7 43 43 H 1.09002 * 109.46818 * 184.28159 * 24 5 4 44 44 H 1.08999 * 109.46906 * 179.97438 * 25 24 5 45 45 H 1.09005 * 109.46996 * 299.99504 * 25 24 5 46 46 H 1.09000 * 109.47162 * 59.99706 * 25 24 5 47 47 H 1.08999 * 109.47224 * 56.21798 * 26 24 5 48 48 H 1.08998 * 109.47040 * 176.21948 * 26 24 5 49 49 H 1.09003 * 109.46915 * 296.21755 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 0.0005 5 6 3.6410 -1.1700 0.1200 6 6 4.2479 -0.3537 -1.0228 7 6 4.0381 -0.5596 1.4394 8 8 3.1953 -0.0613 2.1552 9 7 5.3298 -0.5672 1.8239 10 6 6.3771 -1.0612 0.9196 11 6 7.4585 0.0153 0.7829 12 6 7.9624 0.4060 2.1743 13 6 6.8063 0.9839 2.9937 14 1 6.3934 1.8515 2.4787 15 6 7.3103 1.3981 4.3521 16 1 6.8947 0.9493 5.2422 17 6 8.3021 2.3500 4.4586 18 7 8.8086 2.8961 3.3747 19 14 8.9264 2.8639 6.1425 20 1 8.1995 2.1059 7.1925 21 1 10.3798 2.5752 6.2409 22 1 8.6967 4.3187 6.3328 23 6 5.7181 -0.0763 3.1531 24 6 4.1558 -2.6090 0.0484 25 6 3.4679 -3.4510 1.1248 26 6 3.8461 -3.1933 -1.3314 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6991 -2.0055 -0.0784 31 1 4.0701 -0.8651 -1.9688 32 1 3.7849 0.6327 -1.0505 33 1 5.3208 -0.2471 -0.8633 34 1 6.8162 -1.9701 1.3308 35 1 5.9454 -1.2717 -0.0590 36 1 8.2874 -0.3746 0.1921 37 1 7.0392 0.8916 0.2886 38 1 8.3590 -0.4758 2.6776 39 1 8.7491 1.1542 2.0786 40 1 9.5061 3.5660 3.4496 41 1 4.8518 0.3628 3.6480 42 1 6.1024 -0.9033 3.7503 43 1 5.2332 -2.6180 0.2133 44 1 3.8344 -4.4762 1.0734 45 1 3.6886 -3.0347 2.1078 46 1 2.3905 -3.4419 0.9599 47 1 4.2800 -2.5557 -2.1016 48 1 4.2716 -4.1940 -1.4059 49 1 2.7662 -3.2464 -1.4694 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000824745371.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:28:51 Heat of formation + Delta-G solvation = -84.711489 kcal Electronic energy + Delta-G solvation = -28582.639690 eV Core-core repulsion = 24930.223877 eV Total energy + Delta-G solvation = -3652.415813 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.34475 -40.16698 -38.35288 -37.97476 -35.41677 -34.03782 -33.01069 -32.43864 -31.51485 -29.77938 -28.24572 -27.05310 -26.55386 -24.86345 -23.49178 -22.30401 -21.77078 -20.94656 -19.88282 -18.52735 -18.09441 -17.66778 -17.18572 -16.68938 -16.17647 -16.10810 -15.85559 -15.50460 -15.22790 -15.04639 -14.82916 -14.60724 -14.55830 -14.28554 -13.85895 -13.66093 -13.50982 -13.31840 -13.21199 -13.09500 -12.92153 -12.79543 -12.72970 -12.61090 -12.54177 -12.17751 -12.02468 -11.88491 -11.75249 -11.69068 -11.42280 -11.22214 -10.89912 -10.73679 -10.58425 -10.43372 -9.98567 -9.47062 -8.13015 -6.29231 1.37187 1.39048 1.50811 1.64117 1.68305 2.12089 2.36583 2.43663 3.12934 3.42456 3.51950 3.79615 3.97869 3.99936 4.10331 4.19206 4.28530 4.38973 4.44248 4.46054 4.52978 4.57016 4.63595 4.66147 4.73603 4.79206 4.82714 4.85056 4.92439 4.94548 5.02611 5.05440 5.09817 5.16782 5.24605 5.29170 5.37257 5.42659 5.50909 5.53078 5.55992 5.58308 5.90401 6.12056 6.31312 6.57043 6.64121 6.80598 7.23665 7.39061 7.42328 8.90945 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.004213 C = 0.003888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.063296 B = 6644.361088 C = 7200.301706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.505 3.495 3 O -0.587 6.587 4 N -0.698 5.698 5 C 0.173 3.827 6 C -0.182 4.182 7 C 0.502 3.498 8 O -0.584 6.584 9 N -0.604 5.604 10 C 0.088 3.912 11 C -0.131 4.131 12 C -0.103 4.103 13 C 0.041 3.959 14 H -0.026 1.026 15 C -0.538 4.538 16 H 0.052 0.948 17 C 0.016 3.984 18 N -0.914 5.914 19 Si 0.958 3.042 20 H -0.268 1.268 21 H -0.272 1.272 22 H -0.284 1.284 23 C 0.134 3.866 24 C -0.111 4.111 25 C -0.148 4.148 26 C -0.145 4.145 27 H 0.109 0.891 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.417 0.583 31 H 0.107 0.893 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.036 0.964 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.262 0.738 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.088 0.912 45 H 0.024 0.976 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.083 0.917 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.962 -18.334 -13.728 25.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.294 3.706 3 O -0.467 6.467 4 N -0.353 5.353 5 C 0.082 3.918 6 C -0.239 4.239 7 C 0.290 3.710 8 O -0.464 6.464 9 N -0.336 5.336 10 C -0.033 4.033 11 C -0.169 4.169 12 C -0.141 4.141 13 C 0.022 3.978 14 H -0.008 1.008 15 C -0.577 4.577 16 H 0.070 0.930 17 C -0.183 4.183 18 N -0.553 5.553 19 Si 0.783 3.217 20 H -0.193 1.193 21 H -0.197 1.197 22 H -0.210 1.210 23 C 0.011 3.989 24 C -0.129 4.129 25 C -0.205 4.205 26 C -0.202 4.202 27 H 0.128 0.872 28 H 0.103 0.897 29 H 0.125 0.875 30 H 0.257 0.743 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.144 0.856 36 H 0.114 0.886 37 H 0.055 0.945 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.084 0.916 43 H 0.125 0.875 44 H 0.107 0.893 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.088 0.912 48 H 0.102 0.898 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.874 -17.231 -13.390 24.382 hybrid contribution 0.295 1.041 1.480 1.834 sum -10.579 -16.190 -11.911 22.713 Atomic orbital electron populations 1.21831 0.88371 1.06324 1.05357 1.21549 0.92252 0.83108 0.73687 1.90684 1.71719 1.33671 1.50614 1.45768 1.05439 1.09398 1.74728 1.20237 0.82689 0.98046 0.90796 1.22687 1.01706 1.01281 0.98264 1.21584 0.81906 0.78667 0.88886 1.90609 1.51369 1.47354 1.57052 1.48197 1.06552 1.62339 1.16495 1.22644 0.88317 0.97109 0.95223 1.21967 0.98805 0.98102 0.97991 1.21392 0.99516 0.99275 0.93910 1.18784 0.92216 0.91656 0.95139 1.00813 1.21457 1.20456 1.22952 0.92828 0.93007 1.25728 0.96505 0.95789 1.00280 1.70029 1.27939 1.28066 1.29262 0.85512 0.78370 0.77784 0.80021 1.19252 1.19726 1.20998 1.21391 0.97262 0.97017 0.83236 1.21878 1.02776 0.89152 0.99107 1.21858 1.01171 1.00780 0.96684 1.21946 1.02916 1.01935 0.93353 0.87183 0.89677 0.87528 0.74292 0.87438 0.92848 0.90133 0.89132 0.85562 0.88558 0.94517 0.93832 0.91973 0.92910 0.93967 0.91631 0.87462 0.89320 0.95667 0.91461 0.91165 0.89846 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 10.39 71.23 0.74 -2.13 16 2 C 0.50 14.78 6.55 87.65 0.57 15.35 16 3 O -0.59 -24.60 13.58 14.74 0.20 -24.40 16 4 N -0.70 -16.12 4.38 -426.33 -1.87 -17.99 16 5 C 0.17 4.54 0.18 2.86 0.00 4.54 16 6 C -0.18 -4.77 7.87 71.98 0.57 -4.21 16 7 C 0.50 19.50 5.01 87.66 0.44 19.94 16 8 O -0.58 -28.43 14.04 14.74 0.21 -28.23 16 9 N -0.60 -23.42 2.97 -819.74 -2.43 -25.85 16 10 C 0.09 2.58 3.89 86.36 0.34 2.91 16 11 C -0.13 -4.65 5.91 30.67 0.18 -4.47 16 12 C -0.10 -4.81 4.96 30.62 0.15 -4.66 16 13 C 0.04 2.23 2.24 -11.61 -0.03 2.20 16 14 H -0.03 -1.68 8.14 -2.38 -0.02 -1.70 16 15 C -0.54 -31.33 8.56 25.60 0.22 -31.11 16 16 H 0.05 2.98 7.75 -2.91 -0.02 2.95 16 17 C 0.02 0.92 5.30 84.66 0.45 1.37 16 18 N -0.91 -54.41 11.31 21.45 0.24 -54.17 16 19 Si 0.96 45.14 29.54 68.60 2.03 47.17 16 20 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 23 C 0.13 6.33 5.64 86.22 0.49 6.82 16 24 C -0.11 -1.86 1.91 -10.79 -0.02 -1.89 16 25 C -0.15 -2.46 8.78 71.98 0.63 -1.83 16 26 C -0.14 -1.36 8.68 71.98 0.62 -0.74 16 27 H 0.11 1.07 7.92 -2.38 -0.02 1.05 16 28 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.11 1.57 8.14 -2.38 -0.02 1.55 16 30 H 0.42 6.06 6.03 -92.70 -0.56 5.51 16 31 H 0.11 1.94 5.87 -2.39 -0.01 1.93 16 32 H 0.05 1.87 5.68 -2.39 -0.01 1.86 16 33 H 0.08 2.10 4.76 -2.39 -0.01 2.09 16 34 H 0.09 2.22 7.98 -2.39 -0.02 2.20 16 35 H 0.13 2.86 2.71 -2.38 -0.01 2.85 16 36 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.04 1.46 8.06 -2.39 -0.02 1.44 16 38 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.06 3.33 6.04 -2.39 -0.01 3.32 16 40 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 41 H 0.04 2.25 7.00 -2.38 -0.02 2.23 16 42 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.11 1.80 4.43 -2.39 -0.01 1.79 16 44 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 45 H 0.02 0.60 7.36 -2.38 -0.02 0.58 16 46 H 0.07 0.92 6.58 -2.39 -0.02 0.90 16 47 H 0.07 0.64 5.99 -2.39 -0.01 0.63 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.07 0.50 7.27 -2.39 -0.02 0.48 16 Total: -1.00 -84.92 357.87 4.13 -80.78 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.40 Total: 20.58 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 5.35 Total: 2.11 kcal Atomic # 7 Polarization: -93.95 SS G_CDS: -4.06 Total: -98.01 kcal Atomic # 8 Polarization: -53.03 SS G_CDS: 0.41 Total: -52.62 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -84.92 4.13 -80.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000824745371.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.928 kcal (2) G-P(sol) polarization free energy of solvation -84.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds