Wall clock time and date at job start Fri Apr 10 2020 22:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.50703 * 109.47417 * 240.00329 * 2 1 3 5 5 O 1.21282 * 119.99704 * 240.73042 * 4 2 1 6 6 N 1.34773 * 120.00163 * 60.72444 * 4 2 1 7 7 C 1.46966 * 120.59312 * 354.46784 * 6 4 2 8 8 C 1.53809 * 108.39527 * 124.75876 * 7 6 4 9 9 N 1.46963 * 108.58224 * 49.63825 * 8 7 6 10 10 C 1.36942 * 120.59277 * 124.66628 * 9 8 7 11 11 H 1.07997 * 119.99507 * 209.05061 * 10 9 8 12 12 C 1.38806 * 120.00072 * 29.05510 * 10 9 8 13 13 N 1.31621 * 120.00174 * 17.69078 * 12 10 9 14 14 Si 1.86803 * 119.99765 * 197.69276 * 12 10 9 15 15 H 1.48503 * 109.46907 * 60.00131 * 14 12 10 16 16 H 1.48504 * 109.47117 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47399 * 299.99797 * 14 12 10 18 18 C 1.46966 * 118.80998 * 304.64673 * 9 8 7 19 19 C 1.46963 * 120.59530 * 174.75177 * 6 4 2 20 20 C 1.52997 * 109.47528 * 119.99910 * 2 1 3 21 21 H 1.08998 * 109.48207 * 60.02298 * 20 2 1 22 22 C 1.53093 * 109.47944 * 300.00559 * 20 2 1 23 23 C 1.53177 * 109.16519 * 182.40781 * 22 20 2 24 24 C 1.53174 * 109.03812 * 56.97606 * 23 22 20 25 25 C 1.53096 * 109.16476 * 303.02472 * 24 23 22 26 26 O 1.42895 * 109.41414 * 57.60279 * 25 24 23 27 27 H 1.09001 * 109.47634 * 317.19471 * 1 2 3 28 28 H 1.09001 * 109.47387 * 77.20142 * 1 2 3 29 29 H 1.09007 * 109.46689 * 197.19431 * 1 2 3 30 30 H 1.08990 * 109.47651 * 171.07413 * 3 2 1 31 31 H 1.09002 * 109.47220 * 291.07702 * 3 2 1 32 32 H 1.09007 * 109.46991 * 51.07074 * 3 2 1 33 33 H 1.09001 * 109.61058 * 244.54265 * 7 6 4 34 34 H 1.09005 * 109.60995 * 5.05524 * 7 6 4 35 35 H 1.09006 * 109.74502 * 289.84998 * 8 7 6 36 36 H 1.09007 * 109.67834 * 169.38757 * 8 7 6 37 37 H 0.96997 * 119.99689 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.60813 * 295.47779 * 18 9 8 39 39 H 1.09001 * 109.60886 * 174.96918 * 18 9 8 40 40 H 1.09002 * 109.60728 * 354.94333 * 19 6 4 41 41 H 1.08998 * 109.61138 * 115.45832 * 19 6 4 42 42 H 1.08996 * 109.52524 * 62.49735 * 22 20 2 43 43 H 1.09004 * 109.52460 * 302.30910 * 22 20 2 44 44 H 1.09002 * 109.54102 * 297.11350 * 23 22 20 45 45 H 1.09001 * 109.62102 * 176.89144 * 23 22 20 46 46 H 1.09005 * 109.52453 * 183.11474 * 24 23 22 47 47 H 1.08999 * 109.52240 * 62.92564 * 24 23 22 48 48 H 1.08999 * 109.47989 * 177.59259 * 25 24 23 49 49 H 1.09006 * 109.47774 * 297.62432 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7187 -1.7041 -1.1192 6 7 1.7189 -0.2414 -2.4545 7 6 0.7909 0.8878 -2.6078 8 6 1.4917 1.9842 -3.4279 9 7 2.0671 1.3716 -4.6335 10 6 1.7485 1.8481 -5.8772 11 1 1.7569 1.1836 -6.7285 12 6 1.4150 3.1852 -6.0437 13 7 1.7310 4.0629 -5.1152 14 14 0.5174 3.7389 -7.5856 15 1 -0.7837 3.0297 -7.6825 16 1 0.2789 5.2032 -7.5206 17 1 1.3430 3.4238 -8.7790 18 6 2.9907 0.2388 -4.4804 19 6 2.2942 -0.8540 -3.6601 20 6 2.0400 -0.7212 1.2492 21 1 1.6772 -1.7490 1.2492 22 6 1.5298 0.0003 2.4993 23 6 2.0934 -0.6914 3.7444 24 6 3.6229 -0.7002 3.6618 25 6 4.0524 -1.3946 2.3667 26 8 3.4690 -0.7201 1.2502 27 1 -0.3634 0.7539 0.6983 28 1 -0.3634 0.2277 -1.0021 29 1 -0.3633 -0.9818 0.3038 30 1 3.1181 1.4468 0.1594 31 1 1.8126 1.9083 -0.9589 32 1 1.5522 2.0003 0.7995 33 1 -0.1071 0.5552 -3.1286 34 1 0.5238 1.2778 -1.6256 35 1 2.2851 2.4379 -2.8339 36 1 0.7679 2.7470 -3.7150 37 1 1.4976 4.9971 -5.2314 38 1 3.8908 0.5683 -3.9614 39 1 3.2547 -0.1533 -5.4626 40 1 3.0203 -1.6146 -3.3731 41 1 1.5009 -1.3077 -4.2541 42 1 0.4407 -0.0380 2.5230 43 1 1.8583 1.0394 2.4799 44 1 1.7249 -1.7162 3.7904 45 1 1.7796 -0.1506 4.6372 46 1 4.0308 -1.2394 4.5168 47 1 3.9938 0.3248 3.6657 48 1 5.1387 -1.3659 2.2819 49 1 3.7160 -2.4313 2.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601205985.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:05 Heat of formation + Delta-G solvation = -45.930011 kcal Electronic energy + Delta-G solvation = -28295.420260 eV Core-core repulsion = 24644.686138 eV Total energy + Delta-G solvation = -3650.734122 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.65262 -38.89788 -36.67564 -35.44844 -33.70753 -33.59899 -31.37762 -30.36668 -29.50838 -27.33019 -26.98995 -25.05349 -24.45617 -23.60595 -22.80692 -21.76225 -20.34468 -19.51731 -18.51813 -16.74218 -16.27901 -16.10082 -15.79916 -15.49217 -14.88674 -14.63850 -14.57967 -14.49058 -14.07679 -13.74796 -13.41484 -13.36839 -13.32860 -12.97644 -12.74793 -12.62638 -12.18205 -11.98995 -11.84215 -11.74863 -11.42586 -11.30476 -11.10654 -10.96873 -10.93639 -10.77261 -10.70799 -10.53506 -10.43540 -10.24890 -10.14822 -9.85973 -9.80948 -9.35145 -8.97443 -8.56818 -8.13465 -6.67358 -5.84932 -3.29259 3.13733 3.35317 3.41129 3.42029 3.52924 3.82072 4.44962 4.57575 4.63032 4.73632 4.79200 4.94642 5.05779 5.11878 5.22869 5.26816 5.29680 5.37150 5.48413 5.53673 5.60927 5.65006 5.72567 5.75387 5.81350 5.84616 5.85454 5.90965 5.95375 5.98731 6.02873 6.07262 6.11057 6.20287 6.22173 6.28462 6.41581 6.48321 6.55062 6.84219 6.99720 7.25699 7.39543 7.46182 7.73373 8.04221 8.37465 8.72710 9.13325 9.75841 10.33956 11.22647 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.003594 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.857506 B = 7788.280023 C = 8126.776030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.071 4.071 3 C -0.155 4.155 4 C 0.523 3.477 5 O -0.546 6.546 6 N -0.597 5.597 7 C 0.059 3.941 8 C 0.158 3.842 9 N -0.590 5.590 10 C -0.256 4.256 11 H 0.066 0.934 12 C 0.005 3.995 13 N -0.901 5.901 14 Si 0.903 3.097 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.282 1.282 18 C 0.132 3.868 19 C 0.097 3.903 20 C 0.120 3.880 21 H 0.058 0.942 22 C -0.153 4.153 23 C -0.121 4.121 24 C -0.157 4.157 25 C 0.063 3.937 26 O -0.358 6.358 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.026 0.974 36 H 0.096 0.904 37 H 0.255 0.745 38 H 0.023 0.977 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.068 0.932 47 H 0.070 0.930 48 H 0.089 0.911 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.278 -7.386 16.586 18.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.074 4.074 3 C -0.212 4.212 4 C 0.311 3.689 5 O -0.424 6.424 6 N -0.329 5.329 7 C -0.064 4.064 8 C 0.031 3.969 9 N -0.313 5.313 10 C -0.386 4.386 11 H 0.084 0.916 12 C -0.194 4.194 13 N -0.545 5.545 14 Si 0.733 3.267 15 H -0.210 1.210 16 H -0.216 1.216 17 H -0.208 1.208 18 C 0.005 3.995 19 C -0.027 4.027 20 C 0.062 3.938 21 H 0.076 0.924 22 C -0.191 4.191 23 C -0.158 4.158 24 C -0.195 4.195 25 C -0.014 4.014 26 O -0.277 6.277 27 H 0.089 0.911 28 H 0.103 0.897 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.112 0.888 35 H 0.044 0.956 36 H 0.114 0.886 37 H 0.065 0.935 38 H 0.041 0.959 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.078 0.922 42 H 0.092 0.908 43 H 0.095 0.905 44 H 0.079 0.921 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.089 0.911 48 H 0.108 0.892 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -1.821 -7.627 16.455 18.228 hybrid contribution -0.589 0.308 -0.543 0.858 sum -2.410 -7.318 15.912 17.680 Atomic orbital electron populations 1.22323 0.92329 1.02652 1.04410 1.20714 0.96607 0.97428 0.92655 1.22223 1.02571 0.92692 1.03692 1.20246 0.80249 0.84236 0.84187 1.90626 1.39346 1.26060 1.86345 1.47945 1.45883 1.33730 1.05359 1.23277 0.92709 0.88826 1.01635 1.21280 0.96853 0.92288 0.86493 1.43957 1.49304 1.35281 1.02761 1.19159 1.41616 0.91763 0.86052 0.91615 1.25066 1.00993 0.95584 0.97773 1.70015 1.47746 1.01649 1.35117 0.86358 0.80092 0.77309 0.82934 1.20976 1.21604 1.20849 1.21303 0.91985 0.88740 0.97477 1.22154 0.98104 0.96757 0.85672 1.21738 0.81966 0.97744 0.92351 0.92385 1.22325 1.01051 1.01042 0.94686 1.21572 0.95484 1.00827 0.97966 1.22220 0.96437 1.02144 0.98675 1.22478 0.98392 0.95026 0.85485 1.88021 1.18593 1.76723 1.44338 0.91134 0.89689 0.92186 0.91288 0.89921 0.91848 0.92027 0.88776 0.95612 0.88567 0.93470 0.95890 0.91672 0.90173 0.92241 0.90763 0.90501 0.92054 0.91662 0.91297 0.91115 0.89237 0.93569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 7.17 37.15 0.27 -1.59 16 2 C -0.07 -1.01 0.36 -155.66 -0.06 -1.07 16 3 C -0.15 -2.20 7.43 37.16 0.28 -1.92 16 4 C 0.52 9.56 6.33 -10.99 -0.07 9.49 16 5 O -0.55 -11.52 14.73 -12.47 -0.18 -11.71 16 6 N -0.60 -11.10 2.94 -172.21 -0.51 -11.61 16 7 C 0.06 1.06 4.08 -3.37 -0.01 1.04 16 8 C 0.16 3.53 5.23 -3.37 -0.02 3.52 16 9 N -0.59 -14.45 2.96 -171.76 -0.51 -14.96 16 10 C -0.26 -6.84 9.56 -15.06 -0.14 -6.98 16 11 H 0.07 1.73 7.89 -52.49 -0.41 1.31 16 12 C 0.00 0.13 4.89 -17.43 -0.09 0.04 16 13 N -0.90 -25.20 11.28 55.49 0.63 -24.58 16 14 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 18 C 0.13 2.84 6.67 -3.60 -0.02 2.81 16 19 C 0.10 1.87 6.58 -3.60 -0.02 1.84 16 20 C 0.12 1.63 1.37 -26.68 -0.04 1.59 16 21 H 0.06 0.83 8.09 -51.93 -0.42 0.41 16 22 C -0.15 -1.57 4.76 -26.59 -0.13 -1.70 16 23 C -0.12 -1.08 6.03 -26.55 -0.16 -1.24 16 24 C -0.16 -1.47 6.14 -26.59 -0.16 -1.63 16 25 C 0.06 0.75 6.84 37.21 0.25 1.00 16 26 O -0.36 -5.52 8.50 -53.25 -0.45 -5.97 16 27 H 0.07 0.66 7.25 -51.93 -0.38 0.28 16 28 H 0.08 1.05 4.72 -51.93 -0.25 0.80 16 29 H 0.06 0.65 8.02 -51.93 -0.42 0.23 16 30 H 0.07 1.09 7.43 -51.93 -0.39 0.70 16 31 H 0.08 1.30 3.84 -51.93 -0.20 1.10 16 32 H 0.06 0.73 6.71 -51.92 -0.35 0.38 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.09 1.42 2.91 -51.93 -0.15 1.27 16 35 H 0.03 0.62 7.20 -51.93 -0.37 0.24 16 36 H 0.10 2.37 6.06 -51.93 -0.31 2.06 16 37 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 1.34 7.93 -51.93 -0.41 0.93 16 40 H 0.08 1.53 7.02 -51.93 -0.36 1.16 16 41 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 42 H 0.07 0.66 6.99 -51.93 -0.36 0.29 16 43 H 0.08 0.80 6.52 -51.93 -0.34 0.47 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 46 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 49 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 354.92 15.07 5.35 5.35 Total: -1.00 -31.14 354.92 -8.89 -40.04 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.06 Total: 2.22 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -0.12 Total: 5.21 kcal Atomic # 7 Polarization: -50.76 SS G_CDS: -0.39 Total: -51.15 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.64 Total: -17.68 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.14 -8.89 -40.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205985.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.893 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.037 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds