Wall clock time and date at job start Fri Apr 10 2020 22:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47136 * 2 1 4 4 C 1.50703 * 109.47417 * 240.00329 * 2 1 3 5 5 O 1.21282 * 119.99704 * 240.73042 * 4 2 1 6 6 N 1.34773 * 120.00163 * 60.72444 * 4 2 1 7 7 C 1.46966 * 120.59312 * 354.46784 * 6 4 2 8 8 C 1.53809 * 108.39527 * 124.75876 * 7 6 4 9 9 N 1.46963 * 108.58224 * 49.63825 * 8 7 6 10 10 C 1.36942 * 120.59277 * 124.66628 * 9 8 7 11 11 H 1.07997 * 119.99507 * 209.05061 * 10 9 8 12 12 C 1.38806 * 120.00072 * 29.05510 * 10 9 8 13 13 N 1.31621 * 120.00174 * 17.69078 * 12 10 9 14 14 Si 1.86803 * 119.99765 * 197.69276 * 12 10 9 15 15 H 1.48503 * 109.46907 * 60.00131 * 14 12 10 16 16 H 1.48504 * 109.47117 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.47399 * 299.99797 * 14 12 10 18 18 C 1.46966 * 118.80998 * 304.64673 * 9 8 7 19 19 C 1.46963 * 120.59530 * 174.75177 * 6 4 2 20 20 C 1.52997 * 109.47528 * 119.99910 * 2 1 3 21 21 H 1.08998 * 109.48207 * 60.02298 * 20 2 1 22 22 C 1.53093 * 109.47944 * 300.00559 * 20 2 1 23 23 C 1.53177 * 109.16519 * 182.40781 * 22 20 2 24 24 C 1.53174 * 109.03812 * 56.97606 * 23 22 20 25 25 C 1.53096 * 109.16476 * 303.02472 * 24 23 22 26 26 O 1.42895 * 109.41414 * 57.60279 * 25 24 23 27 27 H 1.09001 * 109.47634 * 317.19471 * 1 2 3 28 28 H 1.09001 * 109.47387 * 77.20142 * 1 2 3 29 29 H 1.09007 * 109.46689 * 197.19431 * 1 2 3 30 30 H 1.08990 * 109.47651 * 171.07413 * 3 2 1 31 31 H 1.09002 * 109.47220 * 291.07702 * 3 2 1 32 32 H 1.09007 * 109.46991 * 51.07074 * 3 2 1 33 33 H 1.09001 * 109.61058 * 244.54265 * 7 6 4 34 34 H 1.09005 * 109.60995 * 5.05524 * 7 6 4 35 35 H 1.09006 * 109.74502 * 289.84998 * 8 7 6 36 36 H 1.09007 * 109.67834 * 169.38757 * 8 7 6 37 37 H 0.96997 * 119.99689 * 180.02562 * 13 12 10 38 38 H 1.08998 * 109.60813 * 295.47779 * 18 9 8 39 39 H 1.09001 * 109.60886 * 174.96918 * 18 9 8 40 40 H 1.09002 * 109.60728 * 354.94333 * 19 6 4 41 41 H 1.08998 * 109.61138 * 115.45832 * 19 6 4 42 42 H 1.08996 * 109.52524 * 62.49735 * 22 20 2 43 43 H 1.09004 * 109.52460 * 302.30910 * 22 20 2 44 44 H 1.09002 * 109.54102 * 297.11350 * 23 22 20 45 45 H 1.09001 * 109.62102 * 176.89144 * 23 22 20 46 46 H 1.09005 * 109.52453 * 183.11474 * 24 23 22 47 47 H 1.08999 * 109.52240 * 62.92564 * 24 23 22 48 48 H 1.08999 * 109.47989 * 177.59259 * 25 24 23 49 49 H 1.09006 * 109.47774 * 297.62432 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.7187 -1.7041 -1.1192 6 7 1.7189 -0.2414 -2.4545 7 6 0.7909 0.8878 -2.6078 8 6 1.4917 1.9842 -3.4279 9 7 2.0671 1.3716 -4.6335 10 6 1.7485 1.8481 -5.8772 11 1 1.7569 1.1836 -6.7285 12 6 1.4150 3.1852 -6.0437 13 7 1.7310 4.0629 -5.1152 14 14 0.5174 3.7389 -7.5856 15 1 -0.7837 3.0297 -7.6825 16 1 0.2789 5.2032 -7.5206 17 1 1.3430 3.4238 -8.7790 18 6 2.9907 0.2388 -4.4804 19 6 2.2942 -0.8540 -3.6601 20 6 2.0400 -0.7212 1.2492 21 1 1.6772 -1.7490 1.2492 22 6 1.5298 0.0003 2.4993 23 6 2.0934 -0.6914 3.7444 24 6 3.6229 -0.7002 3.6618 25 6 4.0524 -1.3946 2.3667 26 8 3.4690 -0.7201 1.2502 27 1 -0.3634 0.7539 0.6983 28 1 -0.3634 0.2277 -1.0021 29 1 -0.3633 -0.9818 0.3038 30 1 3.1181 1.4468 0.1594 31 1 1.8126 1.9083 -0.9589 32 1 1.5522 2.0003 0.7995 33 1 -0.1071 0.5552 -3.1286 34 1 0.5238 1.2778 -1.6256 35 1 2.2851 2.4379 -2.8339 36 1 0.7679 2.7470 -3.7150 37 1 1.4976 4.9971 -5.2314 38 1 3.8908 0.5683 -3.9614 39 1 3.2547 -0.1533 -5.4626 40 1 3.0203 -1.6146 -3.3731 41 1 1.5009 -1.3077 -4.2541 42 1 0.4407 -0.0380 2.5230 43 1 1.8583 1.0394 2.4799 44 1 1.7249 -1.7162 3.7904 45 1 1.7796 -0.1506 4.6372 46 1 4.0308 -1.2394 4.5168 47 1 3.9938 0.3248 3.6657 48 1 5.1387 -1.3659 2.2819 49 1 3.7160 -2.4313 2.3814 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601205985.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:04 Heat of formation + Delta-G solvation = -63.918539 kcal Electronic energy + Delta-G solvation = -28296.200302 eV Core-core repulsion = 24644.686138 eV Total energy + Delta-G solvation = -3651.514163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.92440 -40.06283 -38.34321 -36.69006 -35.43163 -34.45325 -33.14783 -31.97057 -30.62137 -28.77077 -28.35795 -26.20096 -25.72269 -24.92500 -24.42363 -23.13423 -21.58563 -20.69471 -20.02176 -18.46955 -17.59629 -17.25073 -17.13032 -16.78138 -16.49696 -16.15837 -15.68884 -15.53035 -15.37704 -15.26956 -15.20770 -14.88522 -14.46969 -14.26815 -13.90892 -13.52413 -13.32819 -13.29213 -13.21525 -13.08178 -12.93521 -12.66790 -12.47394 -12.37596 -12.23812 -12.15324 -12.02247 -11.99899 -11.81891 -11.67196 -11.59777 -11.31661 -11.13754 -10.59760 -10.50170 -10.18981 -9.76731 -8.62964 -7.87743 -5.36558 1.50296 1.51656 1.58896 1.70541 2.08664 2.52435 2.84959 3.26306 3.43472 3.60111 3.63767 3.95695 3.99995 4.01865 4.09656 4.16924 4.21001 4.22284 4.32211 4.36109 4.38121 4.52477 4.61148 4.62889 4.68257 4.70472 4.73993 4.81701 4.83134 4.89066 4.92877 4.96678 5.01331 5.06032 5.10600 5.14176 5.20414 5.21239 5.30030 5.36968 5.46825 5.57113 5.62475 5.68123 6.36512 6.42610 6.57238 7.11923 7.25884 7.78812 8.33809 9.17081 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.027556 B = 0.003594 C = 0.003445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.857506 B = 7788.280023 C = 8126.776030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.068 4.068 3 C -0.148 4.148 4 C 0.517 3.483 5 O -0.578 6.578 6 N -0.602 5.602 7 C 0.077 3.923 8 C 0.164 3.836 9 N -0.607 5.607 10 C -0.271 4.271 11 H 0.066 0.934 12 C -0.042 4.042 13 N -0.930 5.930 14 Si 0.969 3.031 15 H -0.275 1.275 16 H -0.293 1.293 17 H -0.280 1.280 18 C 0.134 3.866 19 C 0.106 3.894 20 C 0.119 3.881 21 H 0.046 0.954 22 C -0.148 4.148 23 C -0.120 4.120 24 C -0.151 4.151 25 C 0.055 3.945 26 O -0.393 6.393 27 H 0.102 0.898 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.045 0.955 31 H 0.064 0.936 32 H 0.096 0.904 33 H 0.068 0.932 34 H 0.127 0.873 35 H 0.002 0.998 36 H 0.074 0.926 37 H 0.253 0.747 38 H 0.004 0.996 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.067 0.933 48 H 0.090 0.910 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 -7.530 18.230 20.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.071 4.071 3 C -0.205 4.205 4 C 0.306 3.694 5 O -0.458 6.458 6 N -0.334 5.334 7 C -0.046 4.046 8 C 0.038 3.962 9 N -0.331 5.331 10 C -0.401 4.401 11 H 0.084 0.916 12 C -0.238 4.238 13 N -0.575 5.575 14 Si 0.797 3.203 15 H -0.201 1.201 16 H -0.219 1.219 17 H -0.206 1.206 18 C 0.007 3.993 19 C -0.018 4.018 20 C 0.061 3.939 21 H 0.064 0.936 22 C -0.185 4.185 23 C -0.158 4.158 24 C -0.188 4.188 25 C -0.022 4.022 26 O -0.313 6.313 27 H 0.121 0.879 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.115 0.885 33 H 0.086 0.914 34 H 0.144 0.856 35 H 0.020 0.980 36 H 0.092 0.908 37 H 0.062 0.938 38 H 0.022 0.978 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.087 0.913 42 H 0.114 0.886 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.108 0.892 49 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.686 -7.790 18.113 20.058 hybrid contribution 0.115 0.305 -1.063 1.112 sum -3.572 -7.484 17.050 18.959 Atomic orbital electron populations 1.22340 0.89730 1.04476 1.04896 1.20822 0.98596 0.96757 0.90969 1.22158 1.01530 0.92942 1.03848 1.21075 0.79394 0.83909 0.84991 1.90604 1.40680 1.27693 1.86832 1.48047 1.46040 1.33804 1.05516 1.23136 0.91828 0.87079 1.02560 1.21132 0.95716 0.93224 0.86106 1.44231 1.50149 1.35852 1.02840 1.19465 1.41487 0.92108 0.87011 0.91587 1.25789 1.01773 0.95570 1.00657 1.70161 1.48804 1.01656 1.36885 0.85335 0.79026 0.76483 0.79492 1.20113 1.21879 1.20587 1.21329 0.91187 0.88681 0.98087 1.21955 0.98224 0.95725 0.85917 1.21812 0.81324 0.97412 0.93369 0.93647 1.22303 1.02271 1.00549 0.93372 1.21604 0.94809 1.01264 0.98099 1.22170 0.97136 1.01813 0.97723 1.22655 0.98438 0.95040 0.86031 1.87972 1.19835 1.77281 1.46202 0.87933 0.90447 0.91139 0.93535 0.91723 0.88490 0.91363 0.85585 0.97987 0.90824 0.93811 0.97793 0.91089 0.90227 0.91281 0.88628 0.90466 0.91703 0.89573 0.89323 0.91447 0.89203 0.93825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.15 7.17 71.98 0.52 -2.63 16 2 C -0.07 -1.85 0.36 -52.93 -0.02 -1.87 16 3 C -0.15 -4.02 7.43 71.98 0.53 -3.48 16 4 C 0.52 18.76 6.33 87.66 0.55 19.32 16 5 O -0.58 -24.70 14.73 14.20 0.21 -24.49 16 6 N -0.60 -22.30 2.94 -817.15 -2.40 -24.70 16 7 C 0.08 2.71 4.08 86.56 0.35 3.06 16 8 C 0.16 7.53 5.23 86.56 0.45 7.98 16 9 N -0.61 -30.30 2.96 -697.34 -2.07 -32.36 16 10 C -0.27 -14.59 9.56 84.03 0.80 -13.79 16 11 H 0.07 3.48 7.89 -2.91 -0.02 3.45 16 12 C -0.04 -2.25 4.89 84.86 0.42 -1.83 16 13 N -0.93 -52.90 11.28 21.65 0.24 -52.66 16 14 Si 0.97 43.37 29.59 68.60 2.03 45.40 16 15 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 16 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 17 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 18 C 0.13 5.89 6.67 86.41 0.58 6.46 16 19 C 0.11 4.10 6.58 86.42 0.57 4.67 16 20 C 0.12 3.04 1.37 30.62 0.04 3.08 16 21 H 0.05 1.26 8.09 -2.39 -0.02 1.24 16 22 C -0.15 -2.56 4.76 30.68 0.15 -2.41 16 23 C -0.12 -1.78 6.03 30.71 0.19 -1.59 16 24 C -0.15 -2.50 6.14 30.68 0.19 -2.31 16 25 C 0.05 1.27 6.84 72.01 0.49 1.76 16 26 O -0.39 -12.07 8.50 -131.75 -1.12 -13.19 16 27 H 0.10 1.42 7.25 -2.39 -0.02 1.41 16 28 H 0.08 1.68 4.72 -2.39 -0.01 1.67 16 29 H 0.07 1.29 8.02 -2.38 -0.02 1.28 16 30 H 0.05 1.47 7.43 -2.39 -0.02 1.45 16 31 H 0.06 1.99 3.84 -2.39 -0.01 1.98 16 32 H 0.10 1.95 6.71 -2.38 -0.02 1.94 16 33 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.13 3.62 2.91 -2.38 -0.01 3.61 16 35 H 0.00 0.10 7.20 -2.38 -0.02 0.09 16 36 H 0.07 3.71 6.06 -2.38 -0.01 3.70 16 37 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 39 H 0.07 2.98 7.93 -2.39 -0.02 2.96 16 40 H 0.08 3.09 7.02 -2.39 -0.02 3.07 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.10 1.26 6.99 -2.39 -0.02 1.24 16 43 H 0.08 1.35 6.52 -2.39 -0.02 1.34 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 48 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 Total: -1.00 -68.87 354.92 3.65 -65.22 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.94 Total: 20.37 kcal Atomic # 6 Polarization: 10.60 SS G_CDS: 5.81 Total: 16.41 kcal Atomic # 7 Polarization: -105.50 SS G_CDS: -4.22 Total: -109.72 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -0.91 Total: -37.68 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -68.87 3.65 -65.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601205985.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.306 kcal (2) G-P(sol) polarization free energy of solvation -68.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds