Wall clock time and date at job start Fri Apr 10 2020 22:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 C 1.53001 * 109.47123 * 239.99805 * 2 1 3 5 5 N 1.46903 * 109.46883 * 62.56806 * 4 2 1 6 6 C 1.47018 * 111.00000 * 211.91411 * 5 4 2 7 7 C 1.53091 * 109.25784 * 177.61110 * 6 5 4 8 8 O 1.43018 * 109.25952 * 56.84800 * 7 6 5 9 9 C 1.43020 * 113.74123 * 301.33358 * 8 7 6 10 10 C 1.47013 * 110.99322 * 88.28268 * 5 4 2 11 11 C 1.50704 * 109.46872 * 119.99850 * 2 1 3 12 12 O 1.21280 * 119.99825 * 124.91181 * 11 2 1 13 13 N 1.34766 * 120.00269 * 304.91393 * 11 2 1 14 14 C 1.46498 * 120.00153 * 185.00787 * 13 11 2 15 15 C 1.53002 * 109.47111 * 184.98191 * 14 13 11 16 16 C 1.50699 * 115.54998 * 54.48565 * 15 14 13 17 17 H 1.08005 * 120.00222 * 215.54042 * 16 15 14 18 18 C 1.37878 * 120.00376 * 35.26065 * 16 15 14 19 19 N 1.31516 * 119.99876 * 356.32166 * 18 16 15 20 20 Si 1.86796 * 120.00250 * 176.32612 * 18 16 15 21 21 H 1.48497 * 109.47225 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47379 * 120.00080 * 20 18 16 23 23 H 1.48503 * 109.46989 * 239.99975 * 20 18 16 24 24 C 1.53004 * 117.49789 * 200.14688 * 15 14 13 25 25 C 1.52997 * 117.50078 * 268.80886 * 15 14 13 26 26 H 1.08997 * 109.46945 * 304.97340 * 1 2 3 27 27 H 1.09003 * 109.46781 * 64.96824 * 1 2 3 28 28 H 1.08997 * 109.47393 * 184.96898 * 1 2 3 29 29 H 1.08998 * 109.46768 * 188.91476 * 3 2 1 30 30 H 1.09003 * 109.46780 * 308.91510 * 3 2 1 31 31 H 1.08993 * 109.46698 * 68.91730 * 3 2 1 32 32 H 1.08991 * 109.47159 * 182.57189 * 4 2 1 33 33 H 1.09002 * 109.46968 * 302.57119 * 4 2 1 34 34 H 1.09002 * 109.50653 * 297.54939 * 6 5 4 35 35 H 1.09001 * 109.50623 * 57.67310 * 6 5 4 36 36 H 1.08994 * 109.50757 * 296.91912 * 7 6 5 37 37 H 1.09000 * 109.54310 * 176.80323 * 7 6 5 38 38 H 1.09000 * 109.50267 * 298.73416 * 9 8 7 39 39 H 1.08995 * 109.54409 * 178.62295 * 9 8 7 40 40 H 1.09000 * 109.51309 * 302.32312 * 10 5 4 41 41 H 1.08999 * 109.50678 * 62.41598 * 10 5 4 42 42 H 0.97007 * 120.00107 * 5.00001 * 13 11 2 43 43 H 1.08992 * 109.47447 * 64.98533 * 14 13 11 44 44 H 1.09002 * 109.46999 * 304.98203 * 14 13 11 45 45 H 0.96998 * 120.00303 * 185.00186 * 19 18 16 46 46 H 1.08997 * 117.49794 * 215.00398 * 24 15 14 47 47 H 1.08990 * 117.50133 * 0.02875 * 24 15 14 48 48 H 1.09001 * 117.49839 * 359.97438 * 25 15 14 49 49 H 1.09003 * 117.49588 * 144.97798 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6016 0.0061 -2.4479 6 6 1.3720 -0.9163 -3.5694 7 6 0.8608 -0.1259 -4.7767 8 8 1.8033 0.8991 -5.1030 9 6 2.0503 1.8158 -4.0333 10 6 2.5736 1.0450 -2.8184 11 6 2.0323 -0.7104 1.2305 12 8 2.8011 -1.6420 1.1215 13 7 1.6271 -0.3106 2.4521 14 6 2.1983 -0.9277 3.6517 15 6 1.4844 -0.3874 4.8924 16 6 -0.0162 -0.5260 4.8908 17 1 -0.6301 0.2425 5.3369 18 6 -0.6059 -1.6312 4.3147 19 7 0.1359 -2.5286 3.7031 20 14 -2.4585 -1.8540 4.4028 21 1 -3.0596 -0.7138 5.1402 22 1 -3.0169 -1.9044 3.0278 23 1 -2.7715 -3.1212 5.1110 24 6 2.2046 -0.5201 6.2358 25 6 2.0787 0.8509 5.5664 26 1 -0.3633 0.5890 0.8421 27 1 -0.3633 0.4348 -0.9312 28 1 -0.3634 -1.0238 0.0890 29 1 3.1184 1.4465 -0.1593 30 1 1.5526 2.0002 -0.7996 31 1 1.8127 1.9082 0.9588 32 1 3.1289 -0.7614 -1.2265 33 1 1.6395 -1.7348 -1.2725 34 1 2.3067 -1.4134 -3.8290 35 1 0.6305 -1.6616 -3.2817 36 1 -0.1004 0.3273 -4.5345 37 1 0.7429 -0.7963 -5.6281 38 1 1.1236 2.3254 -3.7695 39 1 2.7929 2.5497 -4.3462 40 1 2.7091 1.7315 -1.9826 41 1 3.5277 0.5793 -3.0654 42 1 0.9573 0.3860 2.5370 43 1 3.2604 -0.6905 3.7117 44 1 2.0697 -2.0089 3.6004 45 1 -0.2836 -3.2677 3.2356 46 1 1.5930 -0.7075 7.1183 47 1 3.1871 -0.9918 6.2357 48 1 2.9787 1.2804 5.1262 49 1 1.3843 1.5654 6.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602147677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:07 Heat of formation + Delta-G solvation = -50.380657 kcal Electronic energy + Delta-G solvation = -27580.160920 eV Core-core repulsion = 23929.233803 eV Total energy + Delta-G solvation = -3650.927117 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.07873 -38.97187 -36.93970 -36.12211 -33.81006 -32.76495 -32.13449 -31.36500 -28.22016 -27.10903 -26.04718 -25.31155 -24.58673 -23.93705 -21.62923 -21.18343 -20.45748 -19.26157 -18.42311 -16.76400 -16.45518 -16.28010 -15.68002 -15.51118 -15.27706 -15.02095 -14.83054 -14.45180 -14.16572 -13.93091 -13.47582 -13.35420 -13.19276 -12.81106 -12.58891 -12.38660 -12.07807 -11.72883 -11.63595 -11.60231 -11.44089 -11.40993 -11.09659 -11.06096 -10.80263 -10.68333 -10.58260 -10.54006 -10.51958 -10.24271 -9.75294 -9.69148 -9.04047 -8.85681 -8.74051 -8.39304 -8.26744 -7.77063 -5.98538 -4.19438 3.19869 3.30500 3.32662 3.54703 3.60560 3.75030 4.28342 4.34489 4.74728 4.86243 4.89188 4.95996 5.00353 5.05158 5.19634 5.20105 5.31592 5.40085 5.47264 5.47899 5.65751 5.68929 5.71930 5.75779 5.83203 5.91931 5.95314 6.01809 6.10724 6.13823 6.29998 6.33075 6.48572 6.54015 6.60167 6.63305 6.71945 6.88975 6.90552 6.94444 7.00457 7.11849 7.25029 7.59426 7.71782 7.99316 8.31291 8.64554 8.83944 9.27918 9.44337 10.89786 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003781 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.383677 B = 7403.402225 C = 8149.157539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.139 4.139 4 C 0.082 3.918 5 N -0.532 5.532 6 C 0.018 3.982 7 C 0.065 3.935 8 O -0.389 6.389 9 C 0.064 3.936 10 C 0.000 4.000 11 C 0.515 3.485 12 O -0.566 6.566 13 N -0.677 5.677 14 C 0.164 3.836 15 C 0.038 3.962 16 C -0.497 4.497 17 H 0.060 0.940 18 C 0.076 3.924 19 N -0.864 5.864 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.200 4.200 25 C -0.213 4.213 26 H 0.057 0.943 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.076 0.924 34 H 0.041 0.959 35 H 0.086 0.914 36 H 0.059 0.941 37 H 0.095 0.905 38 H 0.059 0.941 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.040 0.960 42 H 0.396 0.604 43 H 0.014 0.986 44 H 0.117 0.883 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.532 7.424 -13.553 15.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C -0.197 4.197 4 C -0.046 4.046 5 N -0.257 5.257 6 C -0.110 4.110 7 C -0.012 4.012 8 O -0.308 6.308 9 C -0.013 4.013 10 C -0.128 4.128 11 C 0.299 3.701 12 O -0.447 6.447 13 N -0.323 5.323 14 C 0.040 3.960 15 C 0.037 3.963 16 C -0.534 4.534 17 H 0.079 0.921 18 C -0.128 4.128 19 N -0.500 5.500 20 Si 0.718 3.282 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.238 4.238 25 C -0.250 4.250 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.113 0.887 38 H 0.077 0.923 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.058 0.942 42 H 0.230 0.770 43 H 0.032 0.968 44 H 0.134 0.866 45 H 0.072 0.928 46 H 0.097 0.903 47 H 0.085 0.915 48 H 0.086 0.914 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.718 6.789 -13.719 15.403 hybrid contribution -0.645 -0.336 0.412 0.836 sum 1.074 6.453 -13.307 14.828 Atomic orbital electron populations 1.21714 0.92300 1.02388 1.02288 1.20633 0.97766 0.96052 0.93085 1.22019 1.00450 0.94660 1.02543 1.21870 0.98710 0.96439 0.87564 1.62057 1.45526 1.13938 1.04152 1.22804 1.01025 0.95444 0.91752 1.22655 0.92074 0.89757 0.96709 1.87960 1.63348 1.41549 1.37931 1.22670 1.00705 0.91381 0.86527 1.23253 0.93934 0.96153 0.99434 1.20137 0.81592 0.83700 0.84653 1.90605 1.37795 1.29336 1.86926 1.45561 1.42032 1.39668 1.05075 1.21061 0.90912 1.02009 0.81970 1.19248 0.94252 0.93859 0.88949 1.20521 0.88747 1.05295 1.38869 0.92147 1.24980 0.97965 0.95237 0.94659 1.69871 1.34173 1.13248 1.32667 0.86554 0.85495 0.78244 0.77871 1.19769 1.20896 1.20935 1.22937 1.00918 0.99863 1.00124 1.22948 1.02088 0.91651 1.08310 0.92390 0.91113 0.92663 0.92840 0.90904 0.92106 0.93166 0.90572 0.94057 0.89526 0.92266 0.88720 0.92295 0.88751 0.87968 0.94167 0.76957 0.96752 0.86555 0.92780 0.90268 0.91541 0.91435 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.95 8.18 37.16 0.30 -1.65 16 2 C -0.07 -1.11 0.72 -155.66 -0.11 -1.22 16 3 C -0.14 -1.79 6.78 37.16 0.25 -1.54 16 4 C 0.08 1.21 3.59 -3.82 -0.01 1.20 16 5 N -0.53 -6.39 3.66 -234.31 -0.86 -7.25 16 6 C 0.02 0.20 5.51 -3.71 -0.02 0.18 16 7 C 0.07 0.63 7.01 37.20 0.26 0.89 16 8 O -0.39 -4.42 10.83 -35.23 -0.38 -4.81 16 9 C 0.06 0.62 7.01 37.21 0.26 0.88 16 10 C 0.00 0.00 4.95 -3.71 -0.02 -0.02 16 11 C 0.52 10.45 6.48 -10.99 -0.07 10.38 16 12 O -0.57 -13.56 15.92 5.56 0.09 -13.47 16 13 N -0.68 -14.20 4.78 -60.30 -0.29 -14.49 16 14 C 0.16 3.84 4.62 -4.04 -0.02 3.82 16 15 C 0.04 0.88 2.03 -155.66 -0.32 0.56 16 16 C -0.50 -12.46 8.45 -34.44 -0.29 -12.75 16 17 H 0.06 1.53 7.82 -52.48 -0.41 1.12 16 18 C 0.08 1.92 5.31 -17.82 -0.09 1.83 16 19 N -0.86 -22.82 10.13 55.43 0.56 -22.25 16 20 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C -0.20 -4.34 9.96 -26.69 -0.27 -4.61 16 25 C -0.21 -4.36 9.92 -26.69 -0.26 -4.63 16 26 H 0.06 0.88 7.38 -51.93 -0.38 0.50 16 27 H 0.07 0.94 7.54 -51.93 -0.39 0.55 16 28 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.05 0.67 7.48 -51.93 -0.39 0.29 16 30 H 0.07 0.81 6.36 -51.93 -0.33 0.48 16 31 H 0.06 0.79 7.81 -51.93 -0.41 0.39 16 32 H 0.05 0.80 7.61 -51.93 -0.40 0.41 16 33 H 0.08 1.22 7.67 -51.93 -0.40 0.83 16 34 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.09 0.90 8.00 -51.93 -0.42 0.49 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.10 1.03 4.22 -51.93 -0.22 0.81 16 41 H 0.04 0.46 8.11 -51.93 -0.42 0.04 16 42 H 0.40 7.94 7.07 -40.82 -0.29 7.65 16 43 H 0.01 0.33 8.09 -51.93 -0.42 -0.09 16 44 H 0.12 3.16 5.87 -51.93 -0.30 2.85 16 45 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 46 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 47 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 49 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 377.44 15.07 5.69 5.69 Total: -1.00 -28.40 377.44 -9.15 -37.56 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: -8.53 Total: 10.76 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -0.41 Total: -6.67 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -0.58 Total: -43.99 kcal Atomic # 8 Polarization: -17.98 SS G_CDS: -0.29 Total: -18.28 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -28.40 -9.15 -37.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602147677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.823 kcal (2) G-P(sol) polarization free energy of solvation -28.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds