Wall clock time and date at job start Fri Apr 10 2020 22:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.47400 * 2 1 4 4 C 1.53001 * 109.47123 * 239.99805 * 2 1 3 5 5 N 1.46903 * 109.46883 * 62.56806 * 4 2 1 6 6 C 1.47018 * 111.00000 * 211.91411 * 5 4 2 7 7 C 1.53091 * 109.25784 * 177.61110 * 6 5 4 8 8 O 1.43018 * 109.25952 * 56.84800 * 7 6 5 9 9 C 1.43020 * 113.74123 * 301.33358 * 8 7 6 10 10 C 1.47013 * 110.99322 * 88.28268 * 5 4 2 11 11 C 1.50704 * 109.46872 * 119.99850 * 2 1 3 12 12 O 1.21280 * 119.99825 * 124.91181 * 11 2 1 13 13 N 1.34766 * 120.00269 * 304.91393 * 11 2 1 14 14 C 1.46498 * 120.00153 * 185.00787 * 13 11 2 15 15 C 1.53002 * 109.47111 * 184.98191 * 14 13 11 16 16 C 1.50699 * 115.54998 * 54.48565 * 15 14 13 17 17 H 1.08005 * 120.00222 * 215.54042 * 16 15 14 18 18 C 1.37878 * 120.00376 * 35.26065 * 16 15 14 19 19 N 1.31516 * 119.99876 * 356.32166 * 18 16 15 20 20 Si 1.86796 * 120.00250 * 176.32612 * 18 16 15 21 21 H 1.48497 * 109.47225 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47379 * 120.00080 * 20 18 16 23 23 H 1.48503 * 109.46989 * 239.99975 * 20 18 16 24 24 C 1.53004 * 117.49789 * 200.14688 * 15 14 13 25 25 C 1.52997 * 117.50078 * 268.80886 * 15 14 13 26 26 H 1.08997 * 109.46945 * 304.97340 * 1 2 3 27 27 H 1.09003 * 109.46781 * 64.96824 * 1 2 3 28 28 H 1.08997 * 109.47393 * 184.96898 * 1 2 3 29 29 H 1.08998 * 109.46768 * 188.91476 * 3 2 1 30 30 H 1.09003 * 109.46780 * 308.91510 * 3 2 1 31 31 H 1.08993 * 109.46698 * 68.91730 * 3 2 1 32 32 H 1.08991 * 109.47159 * 182.57189 * 4 2 1 33 33 H 1.09002 * 109.46968 * 302.57119 * 4 2 1 34 34 H 1.09002 * 109.50653 * 297.54939 * 6 5 4 35 35 H 1.09001 * 109.50623 * 57.67310 * 6 5 4 36 36 H 1.08994 * 109.50757 * 296.91912 * 7 6 5 37 37 H 1.09000 * 109.54310 * 176.80323 * 7 6 5 38 38 H 1.09000 * 109.50267 * 298.73416 * 9 8 7 39 39 H 1.08995 * 109.54409 * 178.62295 * 9 8 7 40 40 H 1.09000 * 109.51309 * 302.32312 * 10 5 4 41 41 H 1.08999 * 109.50678 * 62.41598 * 10 5 4 42 42 H 0.97007 * 120.00107 * 5.00001 * 13 11 2 43 43 H 1.08992 * 109.47447 * 64.98533 * 14 13 11 44 44 H 1.09002 * 109.46999 * 304.98203 * 14 13 11 45 45 H 0.96998 * 120.00303 * 185.00186 * 19 18 16 46 46 H 1.08997 * 117.49794 * 215.00398 * 24 15 14 47 47 H 1.08990 * 117.50133 * 0.02875 * 24 15 14 48 48 H 1.09001 * 117.49839 * 359.97438 * 25 15 14 49 49 H 1.09003 * 117.49588 * 144.97798 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 1.6016 0.0061 -2.4479 6 6 1.3720 -0.9163 -3.5694 7 6 0.8608 -0.1259 -4.7767 8 8 1.8033 0.8991 -5.1030 9 6 2.0503 1.8158 -4.0333 10 6 2.5736 1.0450 -2.8184 11 6 2.0323 -0.7104 1.2305 12 8 2.8011 -1.6420 1.1215 13 7 1.6271 -0.3106 2.4521 14 6 2.1983 -0.9277 3.6517 15 6 1.4844 -0.3874 4.8924 16 6 -0.0162 -0.5260 4.8908 17 1 -0.6301 0.2425 5.3369 18 6 -0.6059 -1.6312 4.3147 19 7 0.1359 -2.5286 3.7031 20 14 -2.4585 -1.8540 4.4028 21 1 -3.0596 -0.7138 5.1402 22 1 -3.0169 -1.9044 3.0278 23 1 -2.7715 -3.1212 5.1110 24 6 2.2046 -0.5201 6.2358 25 6 2.0787 0.8509 5.5664 26 1 -0.3633 0.5890 0.8421 27 1 -0.3633 0.4348 -0.9312 28 1 -0.3634 -1.0238 0.0890 29 1 3.1184 1.4465 -0.1593 30 1 1.5526 2.0002 -0.7996 31 1 1.8127 1.9082 0.9588 32 1 3.1289 -0.7614 -1.2265 33 1 1.6395 -1.7348 -1.2725 34 1 2.3067 -1.4134 -3.8290 35 1 0.6305 -1.6616 -3.2817 36 1 -0.1004 0.3273 -4.5345 37 1 0.7429 -0.7963 -5.6281 38 1 1.1236 2.3254 -3.7695 39 1 2.7929 2.5497 -4.3462 40 1 2.7091 1.7315 -1.9826 41 1 3.5277 0.5793 -3.0654 42 1 0.9573 0.3860 2.5370 43 1 3.2604 -0.6905 3.7117 44 1 2.0697 -2.0089 3.6004 45 1 -0.2836 -3.2677 3.2356 46 1 1.5930 -0.7075 7.1183 47 1 3.1871 -0.9918 6.2357 48 1 2.9787 1.2804 5.1262 49 1 1.3843 1.5654 6.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602147677.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:07 Heat of formation + Delta-G solvation = -68.092541 kcal Electronic energy + Delta-G solvation = -27580.928965 eV Core-core repulsion = 23929.233803 eV Total energy + Delta-G solvation = -3651.695162 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.29849 -40.21417 -38.57828 -37.40042 -35.16112 -34.36870 -34.00191 -32.18037 -29.23232 -28.25831 -27.84586 -27.17202 -25.65732 -24.77472 -23.13380 -22.78446 -21.35168 -21.10115 -19.98433 -18.38194 -17.62893 -17.13786 -16.98548 -16.87725 -16.69976 -16.31960 -16.01241 -15.80071 -15.69127 -15.28599 -14.91286 -14.64319 -14.37449 -14.26682 -13.93314 -13.61988 -13.44969 -13.25093 -13.06254 -12.97109 -12.90955 -12.65377 -12.53516 -12.28263 -12.26454 -12.11425 -12.02939 -11.90162 -11.75686 -11.49745 -11.40943 -10.90342 -10.69203 -10.64052 -10.37376 -10.09375 -9.56647 -9.40384 -7.91513 -6.18147 1.40427 1.46733 1.54793 1.95716 2.39859 2.43637 2.88193 3.01540 3.15059 3.65272 3.72172 3.84353 3.96957 4.01036 4.07135 4.19647 4.25174 4.28712 4.33860 4.43288 4.55633 4.60751 4.61755 4.69921 4.74832 4.77768 4.81528 4.83625 4.83985 4.87844 4.96658 4.97194 4.98785 5.06721 5.11928 5.15397 5.31443 5.37770 5.41255 5.54017 5.62430 5.88392 5.96587 5.98817 6.02395 6.21620 6.39488 6.81065 7.04848 7.47533 7.63149 8.93620 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.018546 B = 0.003781 C = 0.003435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1509.383677 B = 7403.402225 C = 8149.157539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.133 4.133 4 C 0.092 3.908 5 N -0.526 5.526 6 C 0.015 3.985 7 C 0.068 3.932 8 O -0.406 6.406 9 C 0.065 3.935 10 C -0.001 4.001 11 C 0.508 3.492 12 O -0.608 6.608 13 N -0.673 5.673 14 C 0.175 3.825 15 C 0.009 3.991 16 C -0.502 4.502 17 H 0.058 0.942 18 C 0.039 3.961 19 N -0.887 5.887 20 Si 0.944 3.056 21 H -0.266 1.266 22 H -0.281 1.281 23 H -0.291 1.291 24 C -0.203 4.203 25 C -0.184 4.184 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.029 0.971 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.061 0.939 32 H 0.033 0.967 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.066 0.934 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.029 0.971 42 H 0.402 0.598 43 H 0.012 0.988 44 H 0.078 0.922 45 H 0.254 0.746 46 H 0.076 0.924 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.707 9.777 -14.457 17.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.066 4.066 3 C -0.190 4.190 4 C -0.036 4.036 5 N -0.251 5.251 6 C -0.113 4.113 7 C -0.008 4.008 8 O -0.325 6.325 9 C -0.012 4.012 10 C -0.129 4.129 11 C 0.295 3.705 12 O -0.492 6.492 13 N -0.319 5.319 14 C 0.051 3.949 15 C 0.009 3.991 16 C -0.540 4.540 17 H 0.076 0.924 18 C -0.163 4.163 19 N -0.524 5.524 20 Si 0.771 3.229 21 H -0.190 1.190 22 H -0.207 1.207 23 H -0.218 1.218 24 C -0.242 4.242 25 C -0.221 4.221 26 H 0.077 0.923 27 H 0.113 0.887 28 H 0.049 0.951 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.080 0.920 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.130 0.870 38 H 0.087 0.913 39 H 0.132 0.868 40 H 0.130 0.870 41 H 0.047 0.953 42 H 0.237 0.763 43 H 0.030 0.970 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.095 0.905 47 H 0.092 0.908 48 H 0.103 0.897 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.879 9.178 -14.621 17.285 hybrid contribution -0.339 -1.091 0.725 1.353 sum 0.540 8.087 -13.896 16.087 Atomic orbital electron populations 1.21659 0.91619 1.01008 1.03523 1.20589 0.98024 0.97280 0.90718 1.22016 1.00817 0.92529 1.03684 1.21647 0.97444 0.95751 0.88775 1.62078 1.45527 1.13925 1.03576 1.22885 1.00761 0.95660 0.91975 1.22732 0.91890 0.89654 0.96562 1.87946 1.63754 1.42032 1.38746 1.22799 1.01707 0.91168 0.85489 1.23342 0.93200 0.95833 1.00518 1.21036 0.80628 0.83159 0.85704 1.90578 1.39712 1.31297 1.87574 1.45492 1.42031 1.39547 1.04818 1.20707 0.90999 0.99895 0.83347 1.19277 0.93702 0.96705 0.89448 1.20705 0.89779 1.05035 1.38433 0.92380 1.25540 1.01109 0.95067 0.94576 1.70069 1.35191 1.13581 1.33604 0.85714 0.81691 0.77775 0.77706 1.19000 1.20691 1.21752 1.22959 1.00971 1.01149 0.99075 1.22941 1.02281 0.90788 1.06124 0.92348 0.88720 0.95146 0.92576 0.88283 0.91955 0.94841 0.92643 0.95021 0.89307 0.91527 0.86969 0.91337 0.86805 0.87035 0.95253 0.76312 0.96969 0.90438 0.93582 0.90539 0.90832 0.89690 0.89689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.51 8.18 71.98 0.59 -2.92 16 2 C -0.06 -1.90 0.72 -52.92 -0.04 -1.94 16 3 C -0.13 -3.14 6.78 71.98 0.49 -2.65 16 4 C 0.09 2.73 3.59 86.30 0.31 3.04 16 5 N -0.53 -11.95 3.66 -895.21 -3.27 -15.22 16 6 C 0.02 0.32 5.51 86.31 0.48 0.80 16 7 C 0.07 1.18 7.01 72.01 0.50 1.69 16 8 O -0.41 -8.27 10.83 -148.98 -1.61 -9.88 16 9 C 0.06 1.07 7.01 72.02 0.50 1.57 16 10 C 0.00 -0.03 4.95 86.32 0.43 0.40 16 11 C 0.51 21.01 6.48 87.66 0.57 21.58 16 12 O -0.61 -30.31 15.92 -3.03 -0.05 -30.35 16 13 N -0.67 -28.44 4.78 -463.08 -2.21 -30.66 16 14 C 0.17 8.34 4.62 86.38 0.40 8.74 16 15 C 0.01 0.43 2.03 -52.93 -0.11 0.32 16 16 C -0.50 -24.94 8.45 25.60 0.22 -24.73 16 17 H 0.06 2.86 7.82 -2.91 -0.02 2.84 16 18 C 0.04 1.97 5.31 84.65 0.45 2.42 16 19 N -0.89 -48.04 10.13 21.45 0.22 -47.82 16 20 Si 0.94 40.96 29.54 68.60 2.03 42.99 16 21 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 22 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 C -0.20 -8.63 9.96 30.62 0.30 -8.32 16 25 C -0.18 -7.17 9.92 30.62 0.30 -6.87 16 26 H 0.06 1.68 7.38 -2.39 -0.02 1.67 16 27 H 0.09 2.30 7.54 -2.39 -0.02 2.28 16 28 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.31 7.48 -2.39 -0.02 1.29 16 30 H 0.10 1.84 6.36 -2.39 -0.02 1.82 16 31 H 0.06 1.47 7.81 -2.39 -0.02 1.45 16 32 H 0.03 1.09 7.61 -2.39 -0.02 1.07 16 33 H 0.05 1.85 7.67 -2.39 -0.02 1.83 16 34 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 1.79 8.00 -2.39 -0.02 1.77 16 36 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.11 1.95 4.22 -2.39 -0.01 1.94 16 41 H 0.03 0.64 8.11 -2.39 -0.02 0.63 16 42 H 0.40 15.93 7.07 -92.70 -0.65 15.27 16 43 H 0.01 0.57 8.09 -2.39 -0.02 0.56 16 44 H 0.08 4.38 5.87 -2.39 -0.01 4.36 16 45 H 0.25 13.67 8.32 -92.71 -0.77 12.90 16 46 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 47 H 0.07 2.98 8.14 -2.39 -0.02 2.97 16 48 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 49 H 0.08 3.15 8.14 -2.39 -0.02 3.14 16 Total: -1.00 -61.85 377.44 0.76 -61.09 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.27 Total: 36.72 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: 5.40 Total: -6.87 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -5.27 Total: -93.70 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.66 Total: -40.24 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -61.85 0.76 -61.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602147677.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.002 kcal (2) G-P(sol) polarization free energy of solvation -61.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds