Wall clock time and date at job start Fri Apr 10 2020 22:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99804 * 2 1 4 4 N 1.46501 * 109.46945 * 122.47315 * 3 2 1 5 5 C 1.46497 * 120.00042 * 274.59195 * 4 3 2 6 6 C 1.50690 * 109.47578 * 277.24912 * 5 4 3 7 7 H 1.07997 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00087 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00216 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46971 * 59.99876 * 10 8 6 12 12 H 1.48493 * 109.47077 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46773 * 300.00733 * 10 8 6 14 14 C 1.34777 * 120.00065 * 94.59933 * 4 3 2 15 15 O 1.21287 * 120.00009 * 4.29229 * 14 4 3 16 16 C 1.50699 * 120.00402 * 184.29098 * 14 4 3 17 17 C 1.52997 * 109.46936 * 64.38596 * 16 14 4 18 18 C 1.53010 * 109.46770 * 304.39155 * 16 14 4 19 19 C 1.53001 * 109.47563 * 184.39230 * 16 14 4 20 20 N 1.46890 * 109.47141 * 179.86116 * 19 16 14 21 21 C 1.47017 * 110.99992 * 206.29594 * 20 19 16 22 22 C 1.53101 * 109.25861 * 177.60682 * 21 20 19 23 23 O 1.43019 * 109.25831 * 56.85064 * 22 21 20 24 24 C 1.43013 * 113.73682 * 301.32889 * 23 22 21 25 25 C 1.47012 * 111.00085 * 82.66169 * 20 19 16 26 26 H 1.07998 * 119.99733 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99432 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00484 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47436 * 2.47211 * 3 2 1 30 30 H 1.09005 * 109.47347 * 242.47273 * 3 2 1 31 31 H 1.08996 * 109.47003 * 37.25709 * 5 4 3 32 32 H 1.09003 * 109.46590 * 157.24813 * 5 4 3 33 33 H 0.97003 * 120.00081 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47164 * 197.44355 * 17 16 14 35 35 H 1.08993 * 109.47571 * 317.44425 * 17 16 14 36 36 H 1.08996 * 109.46937 * 77.44828 * 17 16 14 37 37 H 1.09005 * 109.46992 * 305.18150 * 18 16 14 38 38 H 1.08994 * 109.46917 * 65.18166 * 18 16 14 39 39 H 1.09001 * 109.46700 * 185.18764 * 18 16 14 40 40 H 1.08998 * 109.46805 * 59.85551 * 19 16 14 41 41 H 1.08997 * 109.46383 * 299.86414 * 19 16 14 42 42 H 1.08995 * 109.50394 * 297.54091 * 21 20 19 43 43 H 1.08999 * 109.50879 * 57.67430 * 21 20 19 44 44 H 1.08995 * 109.50653 * 296.91361 * 22 21 20 45 45 H 1.09002 * 109.53668 * 176.80112 * 22 21 20 46 46 H 1.09000 * 109.50769 * 298.73460 * 24 23 22 47 47 H 1.09000 * 109.54389 * 178.62620 * 24 23 22 48 48 H 1.08997 * 109.50764 * 302.32625 * 25 20 19 49 49 H 1.09004 * 109.50808 * 62.41500 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9499 1.3573 1.1653 5 6 2.4369 1.8247 2.4554 6 6 2.4616 3.3310 2.4900 7 1 2.8228 3.8849 1.6361 8 6 2.0220 4.0022 3.6113 9 7 1.5817 3.3278 4.6509 10 14 2.0519 5.8695 3.6539 11 1 1.2013 6.4032 2.5598 12 1 1.5321 6.3432 4.9617 13 1 3.4467 6.3464 3.4738 14 6 4.2372 0.9753 1.0503 15 8 4.6826 0.6627 -0.0337 16 6 5.1235 0.9366 2.2686 17 6 4.5999 -0.1168 3.2468 18 6 5.1192 2.3086 2.9460 19 6 6.5510 0.5791 1.8498 20 7 7.4154 0.5447 3.0369 21 6 8.8131 0.8277 2.6793 22 6 9.6668 0.8409 3.9501 23 8 9.5240 -0.4107 4.6273 24 6 8.1754 -0.7179 4.9910 25 6 7.3065 -0.7469 3.7307 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3560 2.1332 0.0443 30 1 2.6565 1.3824 -0.9113 31 1 1.4131 1.4749 2.5877 32 1 3.0614 1.4326 3.2582 33 1 1.2728 3.8000 5.4399 34 1 5.0292 0.0583 4.2334 35 1 3.5137 -0.0495 3.3062 36 1 4.8840 -1.1096 2.8980 37 1 5.4042 3.0721 2.2221 38 1 4.1205 2.5230 3.3261 39 1 5.8302 2.3079 3.7722 40 1 6.9229 1.3282 1.1509 41 1 6.5542 -0.3993 1.3693 42 1 9.1792 0.0554 2.0029 43 1 8.8739 1.7997 2.1899 44 1 9.3349 1.6480 4.6031 45 1 10.7129 0.9939 3.6849 46 1 7.8002 0.0439 5.6743 47 1 8.1421 -1.6923 5.4784 48 1 6.2677 -0.9242 4.0088 49 1 7.6479 -1.5445 3.0708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602154896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:09 Heat of formation + Delta-G solvation = -28.717684 kcal Electronic energy + Delta-G solvation = -28029.047829 eV Core-core repulsion = 24379.060089 eV Total energy + Delta-G solvation = -3649.987740 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.21711 -39.15328 -36.44165 -35.54435 -34.20015 -32.84328 -32.01389 -31.18997 -28.22813 -27.66762 -26.52827 -25.72069 -24.35408 -23.76758 -23.01438 -21.07898 -20.32381 -19.51421 -17.90984 -16.64399 -16.33377 -16.13174 -15.83884 -15.68620 -15.18169 -15.06159 -14.76683 -14.56486 -14.42106 -14.02401 -13.44510 -13.34246 -13.12731 -12.72392 -12.67339 -12.34568 -12.25087 -11.81731 -11.73433 -11.43014 -11.34211 -11.30542 -11.13887 -10.95370 -10.89226 -10.81280 -10.73154 -10.40245 -10.27147 -10.18688 -9.75226 -9.66422 -9.35731 -9.17609 -8.71359 -8.49189 -8.19328 -7.73380 -6.20703 -4.25194 2.56896 3.23401 3.28672 3.30437 3.42574 3.71016 3.87624 4.20749 4.35008 4.90036 5.01917 5.05248 5.11751 5.15743 5.23050 5.26486 5.36625 5.40820 5.46457 5.55651 5.56079 5.63329 5.78275 5.80493 5.85139 5.89210 5.98253 6.06771 6.09465 6.19400 6.22627 6.36605 6.43287 6.54983 6.76998 6.84673 6.93067 6.95421 7.05317 7.06669 7.13095 7.15881 7.17213 7.54002 7.65765 7.73784 8.03217 8.36324 8.76244 9.00965 9.39126 10.85184 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004972 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.834732 B = 5630.692101 C = 7091.182574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.141 3.859 4 N -0.587 5.587 5 C 0.217 3.783 6 C -0.531 4.531 7 H 0.061 0.939 8 C 0.067 3.933 9 N -0.889 5.889 10 Si 0.893 3.107 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.274 1.274 14 C 0.525 3.475 15 O -0.580 6.580 16 C -0.063 4.063 17 C -0.149 4.149 18 C -0.164 4.164 19 C 0.084 3.916 20 N -0.528 5.528 21 C 0.019 3.981 22 C 0.065 3.935 23 O -0.391 6.391 24 C 0.064 3.936 25 C -0.006 4.006 26 H 0.098 0.902 27 H 0.092 0.908 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.266 0.734 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.047 0.953 37 H 0.040 0.960 38 H 0.132 0.868 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.085 0.915 44 H 0.060 0.940 45 H 0.093 0.907 46 H 0.061 0.939 47 H 0.094 0.906 48 H 0.110 0.890 49 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.850 -6.562 -0.681 10.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.017 3.983 4 N -0.316 5.316 5 C 0.098 3.902 6 C -0.570 4.570 7 H 0.079 0.921 8 C -0.137 4.137 9 N -0.527 5.527 10 Si 0.720 3.280 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.200 1.200 14 C 0.313 3.687 15 O -0.462 6.462 16 C -0.067 4.067 17 C -0.206 4.206 18 C -0.220 4.220 19 C -0.044 4.044 20 N -0.252 5.252 21 C -0.109 4.109 22 C -0.012 4.012 23 O -0.309 6.309 24 C -0.013 4.013 25 C -0.134 4.134 26 H 0.116 0.884 27 H 0.110 0.890 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.099 0.901 31 H 0.048 0.952 32 H 0.086 0.914 33 H 0.076 0.924 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.066 0.934 37 H 0.059 0.941 38 H 0.149 0.851 39 H 0.076 0.924 40 H 0.092 0.908 41 H 0.059 0.941 42 H 0.057 0.943 43 H 0.103 0.897 44 H 0.078 0.922 45 H 0.111 0.889 46 H 0.079 0.921 47 H 0.112 0.888 48 H 0.128 0.872 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 7.988 -6.431 -0.668 10.277 hybrid contribution -0.073 0.620 -0.609 0.872 sum 7.915 -5.811 -1.277 9.902 Atomic orbital electron populations 1.23777 0.95801 1.01539 1.01647 1.23355 0.96087 0.99183 0.98904 1.20407 0.93141 0.94656 0.90052 1.48113 1.08790 1.62293 1.12389 1.20049 0.95912 0.94737 0.79542 1.21361 1.43117 0.91300 1.01183 0.92125 1.24889 0.94824 0.98561 0.95398 1.69900 1.42002 1.35853 1.04918 0.86623 0.78689 0.85352 0.77290 1.20224 1.21152 1.19982 1.20506 0.82523 0.75947 0.89741 1.90568 1.74691 1.51786 1.29130 1.20488 0.92798 0.99448 0.93946 1.22289 1.02693 0.96539 0.99058 1.22632 1.07769 0.91735 0.99889 1.21883 0.91914 1.00685 0.89895 1.62028 1.06403 1.30963 1.25846 1.22773 0.88979 1.01727 0.97434 1.22645 0.99509 0.86418 0.92631 1.87938 1.27233 1.38649 1.77098 1.22685 0.81704 1.01287 0.95665 1.23412 1.03252 0.90375 0.96334 0.88377 0.88986 0.88077 0.89985 0.90098 0.95181 0.91402 0.92393 0.90727 0.90620 0.93416 0.94071 0.85057 0.92425 0.90786 0.94083 0.94346 0.89681 0.92174 0.88860 0.92107 0.88804 0.87191 0.94495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 14.32 29.01 0.42 -2.37 16 2 C -0.16 -2.59 9.84 -36.02 -0.35 -2.94 16 3 C 0.14 2.63 5.94 -5.19 -0.03 2.60 16 4 N -0.59 -12.11 2.43 -176.44 -0.43 -12.54 16 5 C 0.22 4.88 3.95 -5.20 -0.02 4.86 16 6 C -0.53 -13.06 6.94 -34.44 -0.24 -13.30 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.68 5.30 -17.82 -0.09 1.58 16 9 N -0.89 -23.26 13.29 55.43 0.74 -22.52 16 10 Si 0.89 19.98 29.54 -169.99 -5.02 14.96 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 13 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.52 10.81 6.46 -10.99 -0.07 10.74 16 15 O -0.58 -13.00 15.48 5.55 0.09 -12.92 16 16 C -0.06 -1.14 0.57 -155.66 -0.09 -1.23 16 17 C -0.15 -2.42 6.26 37.16 0.23 -2.19 16 18 C -0.16 -3.20 7.30 37.16 0.27 -2.93 16 19 C 0.08 1.38 3.45 -3.83 -0.01 1.37 16 20 N -0.53 -7.50 3.71 -234.31 -0.87 -8.37 16 21 C 0.02 0.24 5.55 -3.71 -0.02 0.22 16 22 C 0.07 0.74 7.01 37.21 0.26 1.00 16 23 O -0.39 -5.07 10.83 -35.23 -0.38 -5.45 16 24 C 0.06 0.74 7.01 37.21 0.26 1.00 16 25 C -0.01 -0.08 4.95 -3.71 -0.02 -0.10 16 26 H 0.10 1.41 7.84 -52.49 -0.41 1.00 16 27 H 0.09 1.17 8.06 -52.49 -0.42 0.74 16 28 H 0.10 1.67 8.06 -52.49 -0.42 1.25 16 29 H 0.08 1.54 7.75 -51.93 -0.40 1.13 16 30 H 0.08 1.54 7.24 -51.93 -0.38 1.16 16 31 H 0.03 0.73 8.12 -51.93 -0.42 0.31 16 32 H 0.07 1.53 2.95 -51.93 -0.15 1.38 16 33 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 34 H 0.07 1.13 6.46 -51.93 -0.34 0.80 16 35 H 0.08 1.35 5.45 -51.93 -0.28 1.06 16 36 H 0.05 0.70 7.12 -51.93 -0.37 0.33 16 37 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.13 2.93 2.86 -51.93 -0.15 2.78 16 39 H 0.06 1.06 7.44 -51.93 -0.39 0.67 16 40 H 0.07 1.27 7.74 -51.93 -0.40 0.87 16 41 H 0.04 0.70 7.78 -51.93 -0.40 0.29 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.08 1.01 8.00 -51.93 -0.42 0.59 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 48 H 0.11 1.39 3.66 -51.93 -0.19 1.20 16 49 H 0.04 0.48 8.11 -51.93 -0.42 0.06 16 LS Contribution 371.03 15.07 5.59 5.59 Total: -1.00 -27.49 371.03 -7.84 -35.34 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -8.05 Total: 7.58 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 0.49 Total: -1.67 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: -0.56 Total: -43.44 kcal Atomic # 8 Polarization: -18.07 SS G_CDS: -0.30 Total: -18.37 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -27.49 -7.84 -35.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602154896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.619 kcal (2) G-P(sol) polarization free energy of solvation -27.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds