Wall clock time and date at job start Fri Apr 10 2020 22:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50703 * 119.99804 * 2 1 4 4 N 1.46501 * 109.46945 * 122.47315 * 3 2 1 5 5 C 1.46497 * 120.00042 * 274.59195 * 4 3 2 6 6 C 1.50690 * 109.47578 * 277.24912 * 5 4 3 7 7 H 1.07997 * 120.00167 * 0.02562 * 6 5 4 8 8 C 1.37879 * 120.00132 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00087 * 0.02562 * 8 6 5 10 10 Si 1.86807 * 120.00216 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.46971 * 59.99876 * 10 8 6 12 12 H 1.48493 * 109.47077 * 180.02562 * 10 8 6 13 13 H 1.48503 * 109.46773 * 300.00733 * 10 8 6 14 14 C 1.34777 * 120.00065 * 94.59933 * 4 3 2 15 15 O 1.21287 * 120.00009 * 4.29229 * 14 4 3 16 16 C 1.50699 * 120.00402 * 184.29098 * 14 4 3 17 17 C 1.52997 * 109.46936 * 64.38596 * 16 14 4 18 18 C 1.53010 * 109.46770 * 304.39155 * 16 14 4 19 19 C 1.53001 * 109.47563 * 184.39230 * 16 14 4 20 20 N 1.46890 * 109.47141 * 179.86116 * 19 16 14 21 21 C 1.47017 * 110.99992 * 206.29594 * 20 19 16 22 22 C 1.53101 * 109.25861 * 177.60682 * 21 20 19 23 23 O 1.43019 * 109.25831 * 56.85064 * 22 21 20 24 24 C 1.43013 * 113.73682 * 301.32889 * 23 22 21 25 25 C 1.47012 * 111.00085 * 82.66169 * 20 19 16 26 26 H 1.07998 * 119.99733 * 359.97438 * 1 2 3 27 27 H 1.08000 * 119.99432 * 180.02562 * 1 2 3 28 28 H 1.08002 * 120.00484 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47436 * 2.47211 * 3 2 1 30 30 H 1.09005 * 109.47347 * 242.47273 * 3 2 1 31 31 H 1.08996 * 109.47003 * 37.25709 * 5 4 3 32 32 H 1.09003 * 109.46590 * 157.24813 * 5 4 3 33 33 H 0.97003 * 120.00081 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47164 * 197.44355 * 17 16 14 35 35 H 1.08993 * 109.47571 * 317.44425 * 17 16 14 36 36 H 1.08996 * 109.46937 * 77.44828 * 17 16 14 37 37 H 1.09005 * 109.46992 * 305.18150 * 18 16 14 38 38 H 1.08994 * 109.46917 * 65.18166 * 18 16 14 39 39 H 1.09001 * 109.46700 * 185.18764 * 18 16 14 40 40 H 1.08998 * 109.46805 * 59.85551 * 19 16 14 41 41 H 1.08997 * 109.46383 * 299.86414 * 19 16 14 42 42 H 1.08995 * 109.50394 * 297.54091 * 21 20 19 43 43 H 1.08999 * 109.50879 * 57.67430 * 21 20 19 44 44 H 1.08995 * 109.50653 * 296.91361 * 22 21 20 45 45 H 1.09002 * 109.53668 * 176.80112 * 22 21 20 46 46 H 1.09000 * 109.50769 * 298.73460 * 24 23 22 47 47 H 1.09000 * 109.54389 * 178.62620 * 24 23 22 48 48 H 1.08997 * 109.50764 * 302.32625 * 25 20 19 49 49 H 1.09004 * 109.50808 * 62.41500 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9499 1.3573 1.1653 5 6 2.4369 1.8247 2.4554 6 6 2.4616 3.3310 2.4900 7 1 2.8228 3.8849 1.6361 8 6 2.0220 4.0022 3.6113 9 7 1.5817 3.3278 4.6509 10 14 2.0519 5.8695 3.6539 11 1 1.2013 6.4032 2.5598 12 1 1.5321 6.3432 4.9617 13 1 3.4467 6.3464 3.4738 14 6 4.2372 0.9753 1.0503 15 8 4.6826 0.6627 -0.0337 16 6 5.1235 0.9366 2.2686 17 6 4.5999 -0.1168 3.2468 18 6 5.1192 2.3086 2.9460 19 6 6.5510 0.5791 1.8498 20 7 7.4154 0.5447 3.0369 21 6 8.8131 0.8277 2.6793 22 6 9.6668 0.8409 3.9501 23 8 9.5240 -0.4107 4.6273 24 6 8.1754 -0.7179 4.9910 25 6 7.3065 -0.7469 3.7307 26 1 -0.5399 0.9353 0.0004 27 1 -0.5399 -0.9354 0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3560 2.1332 0.0443 30 1 2.6565 1.3824 -0.9113 31 1 1.4131 1.4749 2.5877 32 1 3.0614 1.4326 3.2582 33 1 1.2728 3.8000 5.4399 34 1 5.0292 0.0583 4.2334 35 1 3.5137 -0.0495 3.3062 36 1 4.8840 -1.1096 2.8980 37 1 5.4042 3.0721 2.2221 38 1 4.1205 2.5230 3.3261 39 1 5.8302 2.3079 3.7722 40 1 6.9229 1.3282 1.1509 41 1 6.5542 -0.3993 1.3693 42 1 9.1792 0.0554 2.0029 43 1 8.8739 1.7997 2.1899 44 1 9.3349 1.6480 4.6031 45 1 10.7129 0.9939 3.6849 46 1 7.8002 0.0439 5.6743 47 1 8.1421 -1.6923 5.4784 48 1 6.2677 -0.9242 4.0088 49 1 7.6479 -1.5445 3.0708 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602154896.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:09 Heat of formation + Delta-G solvation = -44.585911 kcal Electronic energy + Delta-G solvation = -28029.735927 eV Core-core repulsion = 24379.060089 eV Total energy + Delta-G solvation = -3650.675838 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.67673 -40.32727 -37.69177 -37.23134 -35.57421 -34.51482 -33.53158 -32.16503 -29.65629 -29.18386 -27.98742 -27.23662 -25.67044 -24.86872 -24.68255 -22.52347 -21.35809 -20.85190 -19.50350 -18.51024 -17.54384 -17.46544 -17.19155 -17.03754 -16.41083 -16.27114 -16.17038 -15.95742 -15.83630 -15.28835 -14.84161 -14.67822 -14.56415 -14.26373 -14.11713 -13.83777 -13.55876 -13.32778 -13.04994 -13.01284 -12.81626 -12.64237 -12.62830 -12.44585 -12.26108 -12.21948 -12.04478 -11.94032 -11.73290 -11.60104 -11.36461 -11.07349 -10.74021 -10.55360 -10.47057 -10.10842 -9.45284 -9.33182 -8.14764 -6.24056 1.27992 1.44114 1.46433 1.52216 1.77024 2.36070 2.46898 2.85587 3.02214 3.15619 3.69044 3.80851 3.92680 3.98873 4.08061 4.10099 4.19512 4.21871 4.25901 4.34809 4.41090 4.56871 4.62377 4.64107 4.71061 4.74916 4.81344 4.84184 4.85659 4.88227 4.93080 5.02888 5.04532 5.08460 5.13698 5.26575 5.33443 5.40998 5.65912 5.66524 5.78145 5.91413 5.93891 5.96935 6.03810 6.13308 6.20886 6.62365 6.85571 7.31127 7.45159 8.90061 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011773 B = 0.004972 C = 0.003948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.834732 B = 5630.692101 C = 7091.182574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.138 3.862 4 N -0.590 5.590 5 C 0.233 3.767 6 C -0.532 4.532 7 H 0.047 0.953 8 C 0.032 3.968 9 N -0.912 5.912 10 Si 0.942 3.058 11 H -0.276 1.276 12 H -0.282 1.282 13 H -0.274 1.274 14 C 0.518 3.482 15 O -0.601 6.601 16 C -0.060 4.060 17 C -0.141 4.141 18 C -0.150 4.150 19 C 0.097 3.903 20 N -0.534 5.534 21 C 0.018 3.982 22 C 0.067 3.933 23 O -0.403 6.403 24 C 0.064 3.936 25 C -0.006 4.006 26 H 0.100 0.900 27 H 0.119 0.881 28 H 0.101 0.899 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.268 0.732 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.064 0.936 37 H 0.024 0.976 38 H 0.107 0.893 39 H 0.068 0.932 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.116 0.884 46 H 0.060 0.940 47 H 0.116 0.884 48 H 0.112 0.888 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.328 -7.023 -0.043 10.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.016 3.984 4 N -0.318 5.318 5 C 0.113 3.887 6 C -0.571 4.571 7 H 0.065 0.935 8 C -0.170 4.170 9 N -0.551 5.551 10 Si 0.769 3.231 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.307 3.693 15 O -0.484 6.484 16 C -0.064 4.064 17 C -0.198 4.198 18 C -0.207 4.207 19 C -0.032 4.032 20 N -0.259 5.259 21 C -0.110 4.110 22 C -0.010 4.010 23 O -0.322 6.322 24 C -0.012 4.012 25 C -0.134 4.134 26 H 0.118 0.882 27 H 0.137 0.863 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.029 0.971 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.125 0.875 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.134 0.866 46 H 0.078 0.922 47 H 0.134 0.866 48 H 0.129 0.871 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.462 -6.893 -0.037 10.914 hybrid contribution -0.253 0.760 -0.853 1.171 sum 8.209 -6.133 -0.890 10.286 Atomic orbital electron populations 1.24017 0.95086 1.02937 0.98275 1.23165 0.96709 0.97899 1.01965 1.20469 0.92907 0.96000 0.89061 1.48151 1.09282 1.62061 1.12310 1.19772 0.94823 0.93604 0.80527 1.21440 1.42703 0.92324 1.00648 0.93486 1.25418 0.94664 1.01715 0.95161 1.69968 1.42782 1.37035 1.05302 0.85844 0.78515 0.81512 0.77264 1.20192 1.20700 1.19920 1.20981 0.82600 0.75399 0.90305 1.90548 1.74972 1.52775 1.30112 1.20488 0.93534 0.99220 0.93112 1.22225 1.01455 0.96805 0.99266 1.22411 1.06323 0.92185 0.99734 1.21653 0.91213 0.99801 0.90519 1.62022 1.07160 1.31969 1.24712 1.22850 0.88043 1.01866 0.98259 1.22746 1.00582 0.85914 0.91761 1.87928 1.27817 1.39269 1.77196 1.22778 0.80985 1.02515 0.94942 1.23450 1.03690 0.89518 0.96706 0.88165 0.86273 0.88044 0.90504 0.90882 0.97142 0.91029 0.92315 0.89388 0.92322 0.91720 0.95642 0.87514 0.91291 0.92034 0.94688 0.94487 0.89310 0.92210 0.86569 0.92177 0.86641 0.87057 0.94669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.59 14.32 67.78 0.97 -3.62 16 2 C -0.18 -5.83 9.84 25.65 0.25 -5.58 16 3 C 0.14 5.27 5.94 85.63 0.51 5.78 16 4 N -0.59 -24.76 2.43 -830.51 -2.01 -26.77 16 5 C 0.23 10.64 3.95 85.63 0.34 10.97 16 6 C -0.53 -26.48 6.94 25.60 0.18 -26.31 16 7 H 0.05 2.43 7.81 -2.91 -0.02 2.41 16 8 C 0.03 1.58 5.30 84.66 0.45 2.03 16 9 N -0.91 -47.65 13.29 21.45 0.28 -47.36 16 10 Si 0.94 40.76 29.54 68.60 2.03 42.78 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 13 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 14 C 0.52 21.59 6.46 87.66 0.57 22.16 16 15 O -0.60 -27.28 15.48 -3.05 -0.05 -27.33 16 16 C -0.06 -2.15 0.57 -52.92 -0.03 -2.18 16 17 C -0.14 -4.45 6.26 71.98 0.45 -4.00 16 18 C -0.15 -5.85 7.30 71.99 0.53 -5.33 16 19 C 0.10 3.12 3.45 86.31 0.30 3.42 16 20 N -0.53 -14.51 3.71 -895.22 -3.32 -17.83 16 21 C 0.02 0.42 5.55 86.31 0.48 0.90 16 22 C 0.07 1.38 7.01 72.02 0.50 1.88 16 23 O -0.40 -9.56 10.83 -148.98 -1.61 -11.17 16 24 C 0.06 1.36 7.01 72.02 0.50 1.87 16 25 C -0.01 -0.15 4.95 86.32 0.43 0.28 16 26 H 0.10 2.74 7.84 -2.91 -0.02 2.72 16 27 H 0.12 2.68 8.06 -2.91 -0.02 2.65 16 28 H 0.10 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.08 2.94 7.75 -2.39 -0.02 2.92 16 30 H 0.07 2.85 7.24 -2.38 -0.02 2.84 16 31 H 0.01 0.52 8.12 -2.39 -0.02 0.50 16 32 H 0.07 3.26 2.95 -2.39 -0.01 3.25 16 33 H 0.27 13.41 8.31 -92.71 -0.77 12.63 16 34 H 0.09 2.54 6.46 -2.39 -0.02 2.52 16 35 H 0.06 2.07 5.45 -2.39 -0.01 2.05 16 36 H 0.06 1.81 7.12 -2.39 -0.02 1.79 16 37 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.11 4.79 2.86 -2.39 -0.01 4.79 16 39 H 0.07 2.49 7.44 -2.39 -0.02 2.47 16 40 H 0.06 2.12 7.74 -2.39 -0.02 2.10 16 41 H 0.03 1.17 7.78 -2.39 -0.02 1.15 16 42 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.09 2.00 8.00 -2.39 -0.02 1.98 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.23 16 45 H 0.12 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 47 H 0.12 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.11 2.59 3.66 -2.39 -0.01 2.59 16 49 H 0.04 0.86 8.11 -2.39 -0.02 0.84 16 Total: -1.00 -57.92 371.03 2.66 -55.26 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.92 Total: 30.14 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: 6.42 Total: 2.27 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -5.05 Total: -91.96 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -1.66 Total: -38.50 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 2.03 Total: 42.78 kcal Total: -57.92 2.66 -55.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602154896.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.678 kcal (2) G-P(sol) polarization free energy of solvation -57.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds