Wall clock time and date at job start Fri Apr 10 2020 22:27:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99796 * 2 1 4 4 C 1.52994 * 109.47145 * 120.00244 * 3 2 1 5 5 C 1.53005 * 109.47322 * 240.00240 * 3 2 1 6 6 C 1.53004 * 109.46898 * 300.00052 * 5 3 2 7 7 O 1.42901 * 109.46804 * 179.97438 * 6 5 3 8 8 C 1.42901 * 113.99538 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47284 * 0.02562 * 3 2 1 10 10 O 1.21279 * 120.00023 * 246.15474 * 9 3 2 11 11 N 1.34780 * 119.99645 * 66.14789 * 9 3 2 12 12 C 1.47077 * 120.88014 * 354.23029 * 11 9 3 13 13 C 1.53243 * 108.51905 * 231.15829 * 12 11 9 14 14 N 1.46897 * 109.34113 * 306.17644 * 13 12 11 15 15 C 1.46906 * 111.00015 * 187.25241 * 14 13 12 16 16 C 1.50698 * 109.47000 * 169.99352 * 15 14 13 17 17 H 1.07996 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99842 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46845 * 90.00767 * 20 18 16 22 22 H 1.48496 * 109.47445 * 210.00277 * 20 18 16 23 23 H 1.48499 * 109.47399 * 330.00686 * 20 18 16 24 24 C 1.46895 * 111.27350 * 63.10058 * 14 13 12 25 25 C 1.47074 * 120.87885 * 174.20651 * 11 9 3 26 26 H 1.07995 * 120.00491 * 359.97438 * 1 2 3 27 27 H 1.08011 * 119.99558 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00532 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47150 * 305.00285 * 4 3 2 30 30 H 1.09005 * 109.47286 * 65.00518 * 4 3 2 31 31 H 1.09004 * 109.47462 * 185.00334 * 4 3 2 32 32 H 1.08997 * 109.47010 * 59.99615 * 5 3 2 33 33 H 1.08999 * 109.47167 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.47451 * 299.99623 * 6 5 3 35 35 H 1.08999 * 109.47231 * 60.00015 * 6 5 3 36 36 H 1.08998 * 109.47282 * 60.00421 * 8 7 6 37 37 H 1.09005 * 109.46994 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47590 * 299.99889 * 8 7 6 39 39 H 1.08998 * 109.62781 * 111.45524 * 12 11 9 40 40 H 1.08992 * 109.63182 * 350.87100 * 12 11 9 41 41 H 1.08999 * 109.49677 * 186.20941 * 13 12 11 42 42 H 1.09001 * 109.49052 * 66.13221 * 13 12 11 43 43 H 1.08993 * 109.46812 * 289.99841 * 15 14 13 44 44 H 1.09004 * 109.47077 * 49.99598 * 15 14 13 45 45 H 0.97001 * 119.99909 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49336 * 56.85721 * 24 14 13 47 47 H 1.09003 * 109.49217 * 176.90680 * 24 14 13 48 48 H 1.09002 * 109.63083 * 9.12359 * 25 11 9 49 49 H 1.09001 * 109.62726 * 248.55099 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3862 1.2492 5 6 2.9430 1.3863 -1.2493 6 6 3.9373 0.2233 -1.2493 7 8 4.7584 0.2988 -2.4164 8 6 5.7274 -0.7470 -2.5139 9 6 1.0841 2.4505 0.0006 10 8 1.0124 3.1876 -0.9598 11 7 0.2879 2.6557 1.0686 12 6 0.2677 1.7034 2.1892 13 6 -1.1883 1.3235 2.4790 14 7 -1.9775 2.5448 2.6873 15 6 -3.3385 2.2219 3.1363 16 6 -4.0361 3.4843 3.5731 17 1 -3.5202 4.4317 3.5219 18 6 -5.3333 3.4299 4.0371 19 7 -5.9617 2.2762 4.0990 20 14 -6.1983 4.9947 4.5779 21 1 -6.9019 5.5976 3.4175 22 1 -7.1834 4.6736 5.6417 23 1 -5.1973 5.9570 5.1044 24 6 -2.0059 3.3742 1.4752 25 6 -0.5835 3.8381 1.1444 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 2.3279 1.2395 2.1369 30 1 3.7085 0.6114 1.2054 31 1 3.4195 2.3655 1.2952 32 1 2.3164 1.3285 -2.1392 33 1 3.4883 2.3301 -1.2490 34 1 4.5640 0.2811 -0.3594 35 1 3.3924 -0.7206 -1.2494 36 1 5.2199 -1.7113 -2.5395 37 1 6.3103 -0.6184 -3.4260 38 1 6.3915 -0.7087 -1.6504 39 1 0.7076 2.1674 3.0720 40 1 0.8327 0.8107 1.9213 41 1 -1.2314 0.7052 3.3756 42 1 -1.5943 0.7679 1.6337 43 1 -3.8929 1.7655 2.3163 44 1 -3.2893 1.5257 3.9736 45 1 -6.8742 2.2378 4.4259 46 1 -2.4006 2.7900 0.6439 47 1 -2.6424 4.2429 1.6438 48 1 -0.5811 4.3568 0.1856 49 1 -0.2253 4.5074 1.9266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:12 Heat of formation + Delta-G solvation = -34.483459 kcal Electronic energy + Delta-G solvation = -27256.012263 eV Core-core repulsion = 23605.774500 eV Total energy + Delta-G solvation = -3650.237763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.06170 -38.38246 -37.57386 -36.36423 -34.43011 -32.42454 -32.02067 -30.71294 -29.36931 -28.18409 -26.65448 -25.86115 -24.70902 -23.32939 -22.35775 -22.02769 -21.24676 -19.37456 -18.38486 -16.93388 -16.73956 -16.37740 -16.31831 -15.98933 -15.41960 -15.05176 -14.74622 -14.52061 -14.27055 -14.10285 -14.07206 -13.61026 -13.56730 -13.37004 -12.97597 -12.58697 -12.26441 -12.16219 -12.12856 -11.90124 -11.82719 -11.40519 -11.24915 -11.19037 -11.10943 -10.84472 -10.81485 -10.74299 -10.61631 -10.52988 -9.89749 -9.87528 -9.55898 -9.42289 -9.20804 -8.51849 -8.42323 -7.32797 -6.07795 -4.09536 2.05642 2.67386 3.00908 3.29190 3.35728 3.39636 3.54690 4.26105 4.38008 4.50006 4.71687 4.79387 4.88082 4.91418 4.94469 5.04814 5.08344 5.13722 5.22765 5.27143 5.28461 5.34185 5.36152 5.47137 5.50092 5.58205 5.65139 5.76446 5.79563 5.81315 5.94462 5.97115 6.01004 6.12134 6.20485 6.39691 6.40175 6.48709 6.52218 6.72822 6.88627 7.20004 7.25778 7.53569 7.73215 7.99313 8.10091 8.24277 8.46106 8.97721 9.55123 11.02968 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.036546 B = 0.002812 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.974184 B = 9956.360004 C =10257.073505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.163 4.163 3 C -0.044 4.044 4 C -0.158 4.158 5 C -0.089 4.089 6 C 0.060 3.940 7 O -0.392 6.392 8 C 0.032 3.968 9 C 0.526 3.474 10 O -0.543 6.543 11 N -0.604 5.604 12 C 0.096 3.904 13 C 0.036 3.964 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.052 3.948 25 C 0.113 3.887 26 H 0.110 0.890 27 H 0.106 0.894 28 H 0.121 0.879 29 H 0.080 0.920 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.040 0.960 39 H 0.073 0.927 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.033 0.967 43 H -0.009 1.009 44 H 0.031 0.969 45 H 0.262 0.738 46 H 0.024 0.976 47 H 0.097 0.903 48 H 0.088 0.912 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.384 -7.431 -7.403 22.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.181 4.181 3 C -0.048 4.048 4 C -0.215 4.215 5 C -0.127 4.127 6 C -0.017 4.017 7 O -0.311 6.311 8 C -0.065 4.065 9 C 0.314 3.686 10 O -0.420 6.420 11 N -0.337 5.337 12 C -0.027 4.027 13 C -0.093 4.093 14 N -0.260 5.260 15 C 0.070 3.930 16 C -0.548 4.548 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.077 4.077 25 C -0.009 4.009 26 H 0.128 0.872 27 H 0.124 0.876 28 H 0.139 0.861 29 H 0.098 0.902 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.117 0.883 41 H 0.098 0.902 42 H 0.051 0.949 43 H 0.009 0.991 44 H 0.049 0.951 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 20.363 -6.686 -7.612 22.744 hybrid contribution -1.051 -0.095 0.031 1.056 sum 19.311 -6.781 -7.580 21.826 Atomic orbital electron populations 1.24449 0.96173 1.03458 0.97239 1.22620 0.95726 0.96604 1.03191 1.19813 0.94992 0.92439 0.97508 1.22278 0.99739 1.03004 0.96491 1.21220 0.96142 0.98429 0.96869 1.22700 0.92534 0.98767 0.87653 1.87887 1.49298 1.49996 1.43873 1.22732 0.91528 0.90340 1.01890 1.20244 0.80822 0.85420 0.82106 1.90681 1.69248 1.48436 1.33662 1.48223 1.41367 1.24955 1.19199 1.22455 0.98173 0.93095 0.88960 1.22508 0.92801 0.93557 1.00463 1.62089 1.17891 1.16059 1.29976 1.19717 0.81489 0.97126 0.94716 1.21137 0.97323 0.93825 1.42485 0.91810 1.24993 0.97421 0.96325 0.95853 1.69956 1.12388 1.24299 1.47090 0.86495 0.79353 0.83244 0.78323 1.20718 1.21263 1.19743 1.22331 0.94695 0.99424 0.91291 1.21880 0.89924 0.86854 1.02264 0.87187 0.87579 0.86116 0.90171 0.91254 0.91658 0.90124 0.90322 0.92890 0.93009 0.94116 0.89684 0.94132 0.90870 0.88315 0.90223 0.94872 0.99144 0.95076 0.92885 0.95813 0.88514 0.89411 0.90910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.04 10.56 29.02 0.31 -1.74 16 2 C -0.16 -1.63 6.75 -36.03 -0.24 -1.88 16 3 C -0.04 -0.49 0.51 -156.81 -0.08 -0.57 16 4 C -0.16 -1.40 7.85 37.15 0.29 -1.10 16 5 C -0.09 -1.01 3.94 -26.73 -0.11 -1.11 16 6 C 0.06 0.55 5.33 37.16 0.20 0.74 16 7 O -0.39 -4.17 10.70 -35.23 -0.38 -4.55 16 8 C 0.03 0.22 11.01 101.05 1.11 1.33 16 9 C 0.53 7.78 5.12 -10.98 -0.06 7.73 16 10 O -0.54 -9.87 15.44 5.56 0.09 -9.79 16 11 N -0.60 -8.87 2.20 -172.47 -0.38 -9.25 16 12 C 0.10 1.26 3.73 -3.60 -0.01 1.24 16 13 C 0.04 0.59 5.23 -3.70 -0.02 0.57 16 14 N -0.53 -10.84 4.62 -235.76 -1.09 -11.93 16 15 C 0.19 4.86 4.72 -4.97 -0.02 4.84 16 16 C -0.51 -13.84 8.41 -34.44 -0.29 -14.13 16 17 H 0.06 1.71 7.13 -52.49 -0.37 1.34 16 18 C 0.06 1.54 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.17 13.29 55.43 0.74 -25.43 16 20 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 24 C 0.05 0.98 5.46 -3.70 -0.02 0.96 16 25 C 0.11 1.83 6.61 -3.61 -0.02 1.81 16 26 H 0.11 1.60 4.34 -52.49 -0.23 1.37 16 27 H 0.11 1.08 8.06 -52.48 -0.42 0.65 16 28 H 0.12 0.92 7.00 -52.48 -0.37 0.56 16 29 H 0.08 0.69 4.65 -51.93 -0.24 0.45 16 30 H 0.07 0.47 6.17 -51.93 -0.32 0.15 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.06 8.03 -51.93 -0.42 0.65 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.05 0.40 6.32 -51.93 -0.33 0.08 16 35 H 0.05 0.42 6.62 -51.93 -0.34 0.07 16 36 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.07 0.94 8.01 -51.93 -0.42 0.52 16 40 H 0.10 1.07 3.04 -51.93 -0.16 0.91 16 41 H 0.08 1.26 7.99 -51.93 -0.41 0.84 16 42 H 0.03 0.55 6.00 -51.93 -0.31 0.24 16 43 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 44 H 0.03 0.83 7.97 -51.93 -0.41 0.41 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 48 H 0.09 1.44 7.04 -51.93 -0.37 1.08 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -31.63 366.27 -7.57 -39.21 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -7.98 Total: -0.17 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 0.94 Total: 0.13 kcal Atomic # 7 Polarization: -45.88 SS G_CDS: -0.73 Total: -46.61 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.29 Total: -14.33 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.63 -7.57 -39.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.723 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds