Wall clock time and date at job start Fri Apr 10 2020 22:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50699 * 119.99796 * 2 1 4 4 C 1.52994 * 109.47145 * 120.00244 * 3 2 1 5 5 C 1.53005 * 109.47322 * 240.00240 * 3 2 1 6 6 C 1.53004 * 109.46898 * 300.00052 * 5 3 2 7 7 O 1.42901 * 109.46804 * 179.97438 * 6 5 3 8 8 C 1.42901 * 113.99538 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47284 * 0.02562 * 3 2 1 10 10 O 1.21279 * 120.00023 * 246.15474 * 9 3 2 11 11 N 1.34780 * 119.99645 * 66.14789 * 9 3 2 12 12 C 1.47077 * 120.88014 * 354.23029 * 11 9 3 13 13 C 1.53243 * 108.51905 * 231.15829 * 12 11 9 14 14 N 1.46897 * 109.34113 * 306.17644 * 13 12 11 15 15 C 1.46906 * 111.00015 * 187.25241 * 14 13 12 16 16 C 1.50698 * 109.47000 * 169.99352 * 15 14 13 17 17 H 1.07996 * 120.00105 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99842 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99829 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46845 * 90.00767 * 20 18 16 22 22 H 1.48496 * 109.47445 * 210.00277 * 20 18 16 23 23 H 1.48499 * 109.47399 * 330.00686 * 20 18 16 24 24 C 1.46895 * 111.27350 * 63.10058 * 14 13 12 25 25 C 1.47074 * 120.87885 * 174.20651 * 11 9 3 26 26 H 1.07995 * 120.00491 * 359.97438 * 1 2 3 27 27 H 1.08011 * 119.99558 * 180.02562 * 1 2 3 28 28 H 1.08005 * 120.00532 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.47150 * 305.00285 * 4 3 2 30 30 H 1.09005 * 109.47286 * 65.00518 * 4 3 2 31 31 H 1.09004 * 109.47462 * 185.00334 * 4 3 2 32 32 H 1.08997 * 109.47010 * 59.99615 * 5 3 2 33 33 H 1.08999 * 109.47167 * 180.02562 * 5 3 2 34 34 H 1.08998 * 109.47451 * 299.99623 * 6 5 3 35 35 H 1.08999 * 109.47231 * 60.00015 * 6 5 3 36 36 H 1.08998 * 109.47282 * 60.00421 * 8 7 6 37 37 H 1.09005 * 109.46994 * 180.02562 * 8 7 6 38 38 H 1.08999 * 109.47590 * 299.99889 * 8 7 6 39 39 H 1.08998 * 109.62781 * 111.45524 * 12 11 9 40 40 H 1.08992 * 109.63182 * 350.87100 * 12 11 9 41 41 H 1.08999 * 109.49677 * 186.20941 * 13 12 11 42 42 H 1.09001 * 109.49052 * 66.13221 * 13 12 11 43 43 H 1.08993 * 109.46812 * 289.99841 * 15 14 13 44 44 H 1.09004 * 109.47077 * 49.99598 * 15 14 13 45 45 H 0.97001 * 119.99909 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49336 * 56.85721 * 24 14 13 47 47 H 1.09003 * 109.49217 * 176.90680 * 24 14 13 48 48 H 1.09002 * 109.63083 * 9.12359 * 25 11 9 49 49 H 1.09001 * 109.62726 * 248.55099 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9430 1.3862 1.2492 5 6 2.9430 1.3863 -1.2493 6 6 3.9373 0.2233 -1.2493 7 8 4.7584 0.2988 -2.4164 8 6 5.7274 -0.7470 -2.5139 9 6 1.0841 2.4505 0.0006 10 8 1.0124 3.1876 -0.9598 11 7 0.2879 2.6557 1.0686 12 6 0.2677 1.7034 2.1892 13 6 -1.1883 1.3235 2.4790 14 7 -1.9775 2.5448 2.6873 15 6 -3.3385 2.2219 3.1363 16 6 -4.0361 3.4843 3.5731 17 1 -3.5202 4.4317 3.5219 18 6 -5.3333 3.4299 4.0371 19 7 -5.9617 2.2762 4.0990 20 14 -6.1983 4.9947 4.5779 21 1 -6.9019 5.5976 3.4175 22 1 -7.1834 4.6736 5.6417 23 1 -5.1973 5.9570 5.1044 24 6 -2.0059 3.3742 1.4752 25 6 -0.5835 3.8381 1.1444 26 1 -0.5401 0.9352 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 2.3279 1.2395 2.1369 30 1 3.7085 0.6114 1.2054 31 1 3.4195 2.3655 1.2952 32 1 2.3164 1.3285 -2.1392 33 1 3.4883 2.3301 -1.2490 34 1 4.5640 0.2811 -0.3594 35 1 3.3924 -0.7206 -1.2494 36 1 5.2199 -1.7113 -2.5395 37 1 6.3103 -0.6184 -3.4260 38 1 6.3915 -0.7087 -1.6504 39 1 0.7076 2.1674 3.0720 40 1 0.8327 0.8107 1.9213 41 1 -1.2314 0.7052 3.3756 42 1 -1.5943 0.7679 1.6337 43 1 -3.8929 1.7655 2.3163 44 1 -3.2893 1.5257 3.9736 45 1 -6.8742 2.2378 4.4259 46 1 -2.4006 2.7900 0.6439 47 1 -2.6424 4.2429 1.6438 48 1 -0.5811 4.3568 0.1856 49 1 -0.2253 4.5074 1.9266 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205724.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:11 Heat of formation + Delta-G solvation = -56.082220 kcal Electronic energy + Delta-G solvation = -27256.948856 eV Core-core repulsion = 23605.774500 eV Total energy + Delta-G solvation = -3651.174355 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.18622 -39.39827 -38.76026 -37.37881 -35.97270 -34.38109 -32.95980 -31.95326 -30.44357 -29.62235 -27.53972 -27.17251 -25.74467 -24.67881 -23.92736 -22.89061 -22.70195 -20.63957 -19.48910 -18.51835 -17.92876 -17.60433 -17.23780 -16.88941 -16.65669 -16.45071 -15.95450 -15.80304 -15.57368 -15.37941 -15.22655 -14.91767 -14.66479 -14.49160 -14.18453 -13.97307 -13.49941 -13.35556 -13.17175 -12.99654 -12.82979 -12.63136 -12.59621 -12.57968 -12.41319 -12.33047 -12.25189 -12.01866 -11.89619 -11.71079 -11.62422 -11.31426 -10.70833 -10.61463 -10.51048 -10.24439 -9.77498 -9.03172 -8.21489 -6.31047 1.19670 1.41580 1.41893 1.51078 1.53652 1.87297 2.39687 2.85197 3.10822 3.22095 3.28036 3.64036 3.88862 3.92778 4.02908 4.11969 4.20988 4.23750 4.25212 4.26488 4.35037 4.43805 4.50124 4.56114 4.59329 4.60172 4.69086 4.79435 4.84911 4.86195 4.90391 4.91312 4.95165 5.01049 5.02990 5.14249 5.17879 5.23922 5.30625 5.45200 5.52452 5.63458 5.65848 6.02812 6.19680 6.28861 6.39783 6.58880 6.84419 7.05374 7.38603 8.89458 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.036546 B = 0.002812 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.974184 B = 9956.360004 C =10257.073505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.144 4.144 3 C -0.040 4.040 4 C -0.156 4.156 5 C -0.085 4.085 6 C 0.063 3.937 7 O -0.424 6.424 8 C 0.025 3.975 9 C 0.522 3.478 10 O -0.584 6.584 11 N -0.605 5.605 12 C 0.106 3.894 13 C 0.033 3.967 14 N -0.537 5.537 15 C 0.210 3.790 16 C -0.523 4.523 17 H 0.064 0.936 18 C 0.002 3.998 19 N -0.933 5.933 20 Si 0.967 3.033 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.264 1.264 24 C 0.059 3.941 25 C 0.123 3.877 26 H 0.076 0.924 27 H 0.120 0.880 28 H 0.160 0.840 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.030 0.970 43 H -0.042 1.042 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.007 0.993 47 H 0.078 0.922 48 H 0.082 0.918 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.809 -8.359 -6.557 25.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.162 4.162 3 C -0.043 4.043 4 C -0.213 4.213 5 C -0.123 4.123 6 C -0.013 4.013 7 O -0.344 6.344 8 C -0.071 4.071 9 C 0.312 3.688 10 O -0.464 6.464 11 N -0.337 5.337 12 C -0.015 4.015 13 C -0.096 4.096 14 N -0.262 5.262 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.574 5.574 20 Si 0.792 3.208 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.188 1.188 24 C -0.070 4.070 25 C 0.000 4.000 26 H 0.094 0.906 27 H 0.139 0.861 28 H 0.177 0.823 29 H 0.104 0.896 30 H 0.119 0.881 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.048 0.952 43 H -0.025 1.025 44 H 0.030 0.970 45 H 0.073 0.927 46 H 0.025 0.975 47 H 0.096 0.904 48 H 0.101 0.899 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 22.819 -7.627 -6.759 24.992 hybrid contribution -1.770 0.167 -0.318 1.806 sum 21.050 -7.460 -7.077 23.427 Atomic orbital electron populations 1.24359 0.96892 1.02621 0.99553 1.22872 0.95118 0.97251 1.00914 1.19855 0.94395 0.91198 0.98847 1.22315 1.00018 1.04067 0.94876 1.21134 0.96224 0.99139 0.95773 1.22709 0.92378 0.97979 0.88190 1.87844 1.50259 1.51609 1.44645 1.22926 0.91247 0.89907 1.02973 1.21017 0.80876 0.85887 0.81063 1.90660 1.70519 1.50185 1.35043 1.48267 1.40986 1.24614 1.19831 1.22544 0.96031 0.94059 0.88881 1.22653 0.94155 0.92039 1.00760 1.62012 1.15380 1.18081 1.30728 1.19356 0.83677 0.95745 0.92822 1.21460 0.97871 0.94491 1.42300 0.91775 1.25886 0.98242 0.99615 0.95860 1.70077 1.12808 1.26501 1.47990 0.85411 0.78198 0.79229 0.77960 1.20169 1.20771 1.18788 1.22225 0.96404 0.98230 0.90168 1.21641 0.88451 0.87676 1.02207 0.90587 0.86139 0.82299 0.89624 0.88128 0.92037 0.92850 0.91873 0.90624 0.91382 0.92974 0.89057 0.92678 0.89573 0.85257 0.89472 0.95231 1.02463 0.97019 0.92712 0.97462 0.90353 0.89917 0.89929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.29 10.56 67.78 0.72 -3.58 16 2 C -0.14 -2.43 6.75 25.65 0.17 -2.26 16 3 C -0.04 -0.79 0.51 -53.67 -0.03 -0.82 16 4 C -0.16 -2.16 7.85 71.98 0.57 -1.59 16 5 C -0.08 -1.81 3.94 30.60 0.12 -1.69 16 6 C 0.06 0.96 5.33 71.98 0.38 1.34 16 7 O -0.42 -8.15 10.70 -148.98 -1.59 -9.74 16 8 C 0.03 0.28 11.01 113.37 1.25 1.53 16 9 C 0.52 15.22 5.12 87.66 0.45 15.67 16 10 O -0.58 -21.79 15.44 -3.03 -0.05 -21.84 16 11 N -0.60 -17.44 2.20 -817.96 -1.80 -19.24 16 12 C 0.11 2.60 3.73 86.35 0.32 2.92 16 13 C 0.03 1.05 5.23 86.39 0.45 1.50 16 14 N -0.54 -22.24 4.62 -899.82 -4.16 -26.40 16 15 C 0.21 10.92 4.72 85.56 0.40 11.33 16 16 C -0.52 -29.09 8.41 25.60 0.22 -28.87 16 17 H 0.06 3.49 7.13 -2.91 -0.02 3.47 16 18 C 0.00 0.12 5.46 84.66 0.46 0.58 16 19 N -0.93 -55.55 13.29 21.45 0.28 -55.27 16 20 Si 0.97 43.95 29.54 68.60 2.03 45.98 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 C 0.06 2.32 5.46 86.38 0.47 2.79 16 25 C 0.12 4.05 6.61 86.35 0.57 4.62 16 26 H 0.08 2.22 4.34 -2.91 -0.01 2.21 16 27 H 0.12 2.24 8.06 -2.90 -0.02 2.22 16 28 H 0.16 1.58 7.00 -2.91 -0.02 1.56 16 29 H 0.09 1.10 4.65 -2.39 -0.01 1.09 16 30 H 0.10 0.81 6.17 -2.38 -0.01 0.80 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.05 1.42 8.03 -2.39 -0.02 1.40 16 33 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 0.80 6.32 -2.39 -0.02 0.79 16 35 H 0.07 0.80 6.62 -2.39 -0.02 0.78 16 36 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 37 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 38 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.09 1.96 8.01 -2.39 -0.02 1.94 16 40 H 0.13 2.39 3.04 -2.39 -0.01 2.38 16 41 H 0.09 2.68 7.99 -2.39 -0.02 2.66 16 42 H 0.03 0.99 6.00 -2.39 -0.01 0.98 16 43 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 44 H 0.01 0.65 7.97 -2.39 -0.02 0.63 16 45 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 46 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 47 H 0.08 3.34 6.67 -2.39 -0.02 3.32 16 48 H 0.08 2.82 7.04 -2.39 -0.02 2.80 16 49 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -71.79 366.27 2.17 -69.62 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: 0.93 Total: 13.40 kcal Atomic # 6 Polarization: -3.04 SS G_CDS: 6.53 Total: 3.48 kcal Atomic # 7 Polarization: -95.23 SS G_CDS: -5.67 Total: -100.90 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.64 Total: -31.58 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -71.79 2.17 -69.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205724.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.540 kcal (2) G-P(sol) polarization free energy of solvation -71.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds