Wall clock time and date at job start Fri Apr 10 2020 22:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99742 * 2 1 4 4 C 1.52999 * 109.47179 * 239.99983 * 3 2 1 5 5 C 1.53000 * 109.46988 * 120.00159 * 3 2 1 6 6 C 1.53002 * 109.47064 * 59.99970 * 5 3 2 7 7 O 1.42900 * 109.47186 * 180.02562 * 6 5 3 8 8 C 1.42899 * 114.00112 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47467 * 0.02562 * 3 2 1 10 10 O 1.21277 * 120.00360 * 119.63687 * 9 3 2 11 11 N 1.34778 * 120.00135 * 299.63336 * 9 3 2 12 12 C 1.47070 * 120.88456 * 177.03830 * 11 9 3 13 13 C 1.53242 * 108.52141 * 231.16176 * 12 11 9 14 14 N 1.46891 * 109.34323 * 306.17219 * 13 12 11 15 15 C 1.46899 * 111.00392 * 187.25410 * 14 13 12 16 16 C 1.50692 * 109.47421 * 65.69423 * 15 14 13 17 17 H 1.08004 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00126 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47135 * 89.99912 * 20 18 16 22 22 H 1.48504 * 109.47140 * 210.00062 * 20 18 16 23 23 H 1.48503 * 109.47048 * 330.00004 * 20 18 16 24 24 C 1.46902 * 111.27020 * 63.10120 * 14 13 12 25 25 C 1.47086 * 120.87901 * 357.01665 * 11 9 3 26 26 H 1.08001 * 120.00354 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.00081 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99659 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47433 * 188.96977 * 4 3 2 30 30 H 1.08996 * 109.46873 * 308.97154 * 4 3 2 31 31 H 1.08998 * 109.47120 * 68.96973 * 4 3 2 32 32 H 1.09004 * 109.47466 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47384 * 299.99782 * 5 3 2 34 34 H 1.08999 * 109.47337 * 299.99510 * 6 5 3 35 35 H 1.08998 * 109.47173 * 59.99683 * 6 5 3 36 36 H 1.08997 * 109.47178 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47349 * 299.99976 * 8 7 6 38 38 H 1.09002 * 109.47429 * 60.00105 * 8 7 6 39 39 H 1.08999 * 109.63200 * 350.87369 * 12 11 9 40 40 H 1.09003 * 109.62876 * 111.45708 * 12 11 9 41 41 H 1.09003 * 109.49153 * 66.12967 * 13 12 11 42 42 H 1.09002 * 109.49555 * 186.20704 * 13 12 11 43 43 H 1.09000 * 109.47158 * 185.70248 * 15 14 13 44 44 H 1.09008 * 109.46734 * 305.69212 * 15 14 13 45 45 H 0.97002 * 120.00357 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49363 * 176.93718 * 24 14 13 47 47 H 1.08998 * 109.49409 * 56.86012 * 24 14 13 48 48 H 1.08990 * 109.63061 * 248.54915 * 25 11 9 49 49 H 1.09009 * 109.62607 * 9.12776 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 2.9431 1.3861 1.2492 6 6 3.9374 0.2232 1.2492 7 8 4.7585 0.2985 2.4162 8 6 5.7267 -0.7479 2.5142 9 6 1.0842 2.4505 0.0006 10 8 1.0852 3.2487 0.9137 11 7 0.2072 2.5879 -1.0135 12 6 -0.7993 3.6602 -1.0011 13 6 -2.1750 3.0396 -1.2670 14 7 -2.1221 2.2516 -2.5056 15 6 -3.4603 1.7815 -2.8881 16 6 -4.3255 2.9632 -3.2428 17 1 -3.9216 3.9634 -3.1899 18 6 -5.6327 2.7674 -3.6350 19 7 -6.1248 1.5495 -3.6990 20 14 -6.7051 4.2322 -4.0755 21 1 -6.5745 4.5229 -5.5258 22 1 -8.1222 3.9214 -3.7585 23 1 -6.2710 5.4168 -3.2921 24 6 -1.1845 1.1275 -2.3824 25 6 0.2317 1.6698 -2.1624 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 3.6041 2.2495 -1.1728 30 1 3.5398 0.4779 -1.3329 31 1 2.3119 1.4889 -2.1319 32 1 3.4884 2.3299 1.2491 33 1 2.3165 1.3284 2.1392 34 1 3.3924 -0.7208 1.2492 35 1 4.5639 0.2809 0.3592 36 1 6.3090 -0.6199 3.4267 37 1 5.2186 -1.7118 2.5402 38 1 6.3909 -0.7105 1.6507 39 1 -0.8006 4.1500 -0.0274 40 1 -0.5692 4.3875 -1.7797 41 1 -2.4484 2.3909 -0.4347 42 1 -2.9172 3.8310 -1.3708 43 1 -3.3799 1.1183 -3.7493 44 1 -3.9076 1.2410 -2.0538 45 1 -7.0446 1.4118 -3.9745 46 1 -1.2083 0.5323 -3.2953 47 1 -1.4716 0.5055 -1.5347 48 1 0.5610 2.2057 -3.0524 49 1 0.9123 0.8435 -1.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602205726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:14 Heat of formation + Delta-G solvation = -30.440977 kcal Electronic energy + Delta-G solvation = -27323.115375 eV Core-core repulsion = 23673.052908 eV Total energy + Delta-G solvation = -3650.062467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.12188 -38.37348 -37.58754 -36.36563 -34.44642 -32.42725 -31.97689 -30.70697 -29.38676 -28.20529 -26.65293 -25.86102 -24.67652 -23.33817 -22.40577 -22.03161 -21.26213 -19.29913 -18.48306 -16.92379 -16.70243 -16.38513 -16.31080 -15.95033 -15.41504 -15.04879 -14.74349 -14.55138 -14.18726 -14.10683 -14.08150 -13.67794 -13.57957 -13.34553 -12.97758 -12.53961 -12.23208 -12.19742 -12.12627 -11.90372 -11.79118 -11.40509 -11.25924 -11.14336 -11.11025 -10.87443 -10.80764 -10.74333 -10.58260 -10.55127 -9.89781 -9.87717 -9.54286 -9.41625 -9.20473 -8.51891 -8.42408 -7.31927 -6.08239 -4.10031 2.09319 2.67366 3.00342 3.29263 3.35555 3.38836 3.55357 4.27516 4.37622 4.52051 4.72769 4.78190 4.88250 4.91601 4.96878 5.06376 5.11420 5.15623 5.24712 5.26072 5.27310 5.34672 5.36410 5.43078 5.51890 5.58265 5.63646 5.77365 5.78999 5.83114 5.94070 5.97416 6.01129 6.11777 6.20730 6.39205 6.43683 6.49679 6.54876 6.71458 6.89719 7.19444 7.24955 7.52261 7.72692 7.98782 8.09472 8.23669 8.45585 8.97242 9.54721 11.02501 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035164 B = 0.002852 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.069229 B = 9816.031955 C =10121.180368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.168 4.168 3 C -0.043 4.043 4 C -0.159 4.159 5 C -0.088 4.088 6 C 0.061 3.939 7 O -0.392 6.392 8 C 0.032 3.968 9 C 0.526 3.474 10 O -0.543 6.543 11 N -0.604 5.604 12 C 0.113 3.887 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.194 3.806 16 C -0.509 4.509 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.273 1.273 24 C 0.032 3.968 25 C 0.095 3.905 26 H 0.115 0.885 27 H 0.105 0.895 28 H 0.120 0.880 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.040 0.960 38 H 0.040 0.960 39 H 0.087 0.913 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.097 0.903 43 H 0.031 0.969 44 H -0.009 1.009 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.039 0.961 48 H 0.074 0.926 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.626 -5.835 6.558 22.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.186 4.186 3 C -0.047 4.047 4 C -0.216 4.216 5 C -0.126 4.126 6 C -0.016 4.016 7 O -0.311 6.311 8 C -0.065 4.065 9 C 0.314 3.686 10 O -0.420 6.420 11 N -0.338 5.338 12 C -0.009 4.009 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.070 3.930 16 C -0.548 4.548 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.537 5.537 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.198 1.198 24 C -0.098 4.098 25 C -0.027 4.027 26 H 0.133 0.867 27 H 0.123 0.877 28 H 0.138 0.862 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.049 0.951 44 H 0.009 0.991 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.057 0.943 48 H 0.092 0.908 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 20.593 -5.041 6.755 22.252 hybrid contribution -1.049 -0.253 0.000 1.079 sum 19.545 -5.294 6.756 21.346 Atomic orbital electron populations 1.24598 0.96279 1.03723 0.96879 1.22599 0.95729 0.96457 1.03792 1.19778 0.94965 0.92423 0.97492 1.22286 0.99832 1.02960 0.96520 1.21240 0.96141 0.98458 0.96780 1.22665 0.92503 0.98765 0.87634 1.87884 1.49345 1.49941 1.43904 1.22730 0.91548 0.90334 1.01869 1.20256 0.80996 0.85781 0.81579 1.90679 1.70923 1.44469 1.35930 1.48266 1.33021 1.31790 1.20674 1.21886 0.87200 0.89272 1.02576 1.22347 0.95531 0.98848 0.91055 1.62086 1.12094 1.21284 1.30537 1.19715 0.82180 0.95999 0.95142 1.21137 0.95408 0.93341 1.44907 0.91811 1.24988 0.97989 0.95903 0.95686 1.69951 1.15498 1.20210 1.48071 0.86494 0.79454 0.82633 0.78806 1.20619 1.21332 1.19819 1.22611 0.92147 0.93963 1.01030 1.22447 0.98515 0.93484 0.88266 0.86674 0.87703 0.86215 0.91612 0.91209 0.90156 0.90231 0.90272 0.93016 0.92980 0.89693 0.94127 0.94134 0.89429 0.90898 0.95814 0.88448 0.95087 0.99121 0.92880 0.90275 0.94279 0.90815 0.88244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 9.91 29.01 0.29 -1.83 16 2 C -0.17 -1.71 6.75 -36.03 -0.24 -1.95 16 3 C -0.04 -0.48 0.51 -156.82 -0.08 -0.56 16 4 C -0.16 -1.41 7.46 37.16 0.28 -1.13 16 5 C -0.09 -1.01 3.91 -26.73 -0.10 -1.12 16 6 C 0.06 0.56 5.34 37.16 0.20 0.76 16 7 O -0.39 -4.22 10.70 -35.23 -0.38 -4.59 16 8 C 0.03 0.23 11.01 101.05 1.11 1.34 16 9 C 0.53 7.78 5.34 -10.99 -0.06 7.72 16 10 O -0.54 -9.84 15.44 5.56 0.09 -9.75 16 11 N -0.60 -8.85 1.91 -172.47 -0.33 -9.18 16 12 C 0.11 1.82 6.59 -3.61 -0.02 1.80 16 13 C 0.05 0.96 5.46 -3.70 -0.02 0.94 16 14 N -0.53 -10.75 4.62 -235.77 -1.09 -11.84 16 15 C 0.19 4.83 4.72 -4.98 -0.02 4.81 16 16 C -0.51 -13.79 8.41 -34.44 -0.29 -14.08 16 17 H 0.06 1.71 7.13 -52.48 -0.37 1.33 16 18 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 19 N -0.90 -26.09 13.29 55.43 0.74 -25.35 16 20 Si 0.90 21.24 29.54 -169.99 -5.02 16.22 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 24 C 0.03 0.51 5.09 -3.70 -0.02 0.49 16 25 C 0.10 1.25 3.82 -3.60 -0.01 1.23 16 26 H 0.12 1.69 4.18 -52.49 -0.22 1.47 16 27 H 0.10 1.13 8.06 -52.48 -0.42 0.70 16 28 H 0.12 0.95 7.00 -52.49 -0.37 0.58 16 29 H 0.06 0.59 8.12 -51.93 -0.42 0.16 16 30 H 0.07 0.47 6.92 -51.93 -0.36 0.11 16 31 H 0.08 0.72 4.61 -51.93 -0.24 0.48 16 32 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 33 H 0.08 1.05 8.09 -51.93 -0.42 0.63 16 34 H 0.05 0.43 6.62 -51.93 -0.34 0.08 16 35 H 0.05 0.40 6.64 -51.93 -0.34 0.06 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.09 1.43 7.08 -51.93 -0.37 1.06 16 40 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.10 1.97 6.67 -51.93 -0.35 1.62 16 43 H 0.03 0.82 7.97 -51.93 -0.41 0.41 16 44 H -0.01 -0.24 8.13 -51.92 -0.42 -0.66 16 45 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 47 H 0.04 0.63 5.31 -51.93 -0.28 0.36 16 48 H 0.07 0.95 8.06 -51.93 -0.42 0.53 16 49 H 0.10 1.07 3.21 -51.92 -0.17 0.90 16 LS Contribution 365.49 15.07 5.51 5.51 Total: -1.00 -31.42 365.49 -7.59 -39.01 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -8.01 Total: 0.11 kcal Atomic # 6 Polarization: -1.04 SS G_CDS: 0.90 Total: -0.13 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: -0.68 Total: -46.37 kcal Atomic # 8 Polarization: -14.05 SS G_CDS: -0.29 Total: -14.34 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.42 -7.59 -39.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.570 kcal (2) G-P(sol) polarization free energy of solvation -31.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds