Wall clock time and date at job start Fri Apr 10 2020 22:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50693 * 119.99742 * 2 1 4 4 C 1.52999 * 109.47179 * 239.99983 * 3 2 1 5 5 C 1.53000 * 109.46988 * 120.00159 * 3 2 1 6 6 C 1.53002 * 109.47064 * 59.99970 * 5 3 2 7 7 O 1.42900 * 109.47186 * 180.02562 * 6 5 3 8 8 C 1.42899 * 114.00112 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47467 * 0.02562 * 3 2 1 10 10 O 1.21277 * 120.00360 * 119.63687 * 9 3 2 11 11 N 1.34778 * 120.00135 * 299.63336 * 9 3 2 12 12 C 1.47070 * 120.88456 * 177.03830 * 11 9 3 13 13 C 1.53242 * 108.52141 * 231.16176 * 12 11 9 14 14 N 1.46891 * 109.34323 * 306.17219 * 13 12 11 15 15 C 1.46899 * 111.00392 * 187.25410 * 14 13 12 16 16 C 1.50692 * 109.47421 * 65.69423 * 15 14 13 17 17 H 1.08004 * 119.99764 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00270 * 180.02562 * 16 15 14 19 19 N 1.31512 * 120.00126 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00129 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47135 * 89.99912 * 20 18 16 22 22 H 1.48504 * 109.47140 * 210.00062 * 20 18 16 23 23 H 1.48503 * 109.47048 * 330.00004 * 20 18 16 24 24 C 1.46902 * 111.27020 * 63.10120 * 14 13 12 25 25 C 1.47086 * 120.87901 * 357.01665 * 11 9 3 26 26 H 1.08001 * 120.00354 * 359.97438 * 1 2 3 27 27 H 1.08006 * 120.00081 * 180.02562 * 1 2 3 28 28 H 1.07994 * 119.99659 * 180.02562 * 2 1 3 29 29 H 1.09006 * 109.47433 * 188.96977 * 4 3 2 30 30 H 1.08996 * 109.46873 * 308.97154 * 4 3 2 31 31 H 1.08998 * 109.47120 * 68.96973 * 4 3 2 32 32 H 1.09004 * 109.47466 * 179.97438 * 5 3 2 33 33 H 1.08998 * 109.47384 * 299.99782 * 5 3 2 34 34 H 1.08999 * 109.47337 * 299.99510 * 6 5 3 35 35 H 1.08998 * 109.47173 * 59.99683 * 6 5 3 36 36 H 1.08997 * 109.47178 * 180.02562 * 8 7 6 37 37 H 1.09000 * 109.47349 * 299.99976 * 8 7 6 38 38 H 1.09002 * 109.47429 * 60.00105 * 8 7 6 39 39 H 1.08999 * 109.63200 * 350.87369 * 12 11 9 40 40 H 1.09003 * 109.62876 * 111.45708 * 12 11 9 41 41 H 1.09003 * 109.49153 * 66.12967 * 13 12 11 42 42 H 1.09002 * 109.49555 * 186.20704 * 13 12 11 43 43 H 1.09000 * 109.47158 * 185.70248 * 15 14 13 44 44 H 1.09008 * 109.46734 * 305.69212 * 15 14 13 45 45 H 0.97002 * 120.00357 * 179.97438 * 19 18 16 46 46 H 1.09002 * 109.49363 * 176.93718 * 24 14 13 47 47 H 1.08998 * 109.49409 * 56.86012 * 24 14 13 48 48 H 1.08990 * 109.63061 * 248.54915 * 25 11 9 49 49 H 1.09009 * 109.62607 * 9.12776 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 6 2.9431 1.3862 -1.2492 5 6 2.9431 1.3861 1.2492 6 6 3.9374 0.2232 1.2492 7 8 4.7585 0.2985 2.4162 8 6 5.7267 -0.7479 2.5142 9 6 1.0842 2.4505 0.0006 10 8 1.0852 3.2487 0.9137 11 7 0.2072 2.5879 -1.0135 12 6 -0.7993 3.6602 -1.0011 13 6 -2.1750 3.0396 -1.2670 14 7 -2.1221 2.2516 -2.5056 15 6 -3.4603 1.7815 -2.8881 16 6 -4.3255 2.9632 -3.2428 17 1 -3.9216 3.9634 -3.1899 18 6 -5.6327 2.7674 -3.6350 19 7 -6.1248 1.5495 -3.6990 20 14 -6.7051 4.2322 -4.0755 21 1 -6.5745 4.5229 -5.5258 22 1 -8.1222 3.9214 -3.7585 23 1 -6.2710 5.4168 -3.2921 24 6 -1.1845 1.1275 -2.3824 25 6 0.2317 1.6698 -2.1624 26 1 -0.5401 0.9353 0.0004 27 1 -0.5400 -0.9354 0.0004 28 1 1.8499 -0.9353 -0.0004 29 1 3.6041 2.2495 -1.1728 30 1 3.5398 0.4779 -1.3329 31 1 2.3119 1.4889 -2.1319 32 1 3.4884 2.3299 1.2491 33 1 2.3165 1.3284 2.1392 34 1 3.3924 -0.7208 1.2492 35 1 4.5639 0.2809 0.3592 36 1 6.3090 -0.6199 3.4267 37 1 5.2186 -1.7118 2.5402 38 1 6.3909 -0.7105 1.6507 39 1 -0.8006 4.1500 -0.0274 40 1 -0.5692 4.3875 -1.7797 41 1 -2.4484 2.3909 -0.4347 42 1 -2.9172 3.8310 -1.3708 43 1 -3.3799 1.1183 -3.7493 44 1 -3.9076 1.2410 -2.0538 45 1 -7.0446 1.4118 -3.9745 46 1 -1.2083 0.5323 -3.2953 47 1 -1.4716 0.5055 -1.5347 48 1 0.5610 2.2057 -3.0524 49 1 0.9123 0.8435 -1.9563 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602205726.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:13 Heat of formation + Delta-G solvation = -51.591968 kcal Electronic energy + Delta-G solvation = -27324.032551 eV Core-core repulsion = 23673.052908 eV Total energy + Delta-G solvation = -3650.979643 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.24860 -39.39016 -38.76479 -37.38662 -35.97736 -34.37908 -32.94135 -31.92422 -30.45024 -29.64852 -27.54858 -27.17005 -25.71509 -24.67008 -23.93819 -22.95506 -22.69910 -20.55781 -19.58094 -18.51440 -17.92995 -17.57551 -17.23135 -16.87469 -16.65285 -16.44117 -15.92876 -15.80932 -15.56128 -15.35022 -15.19313 -14.96871 -14.69057 -14.51553 -14.17445 -13.94045 -13.45057 -13.36957 -13.13655 -12.97994 -12.83897 -12.64532 -12.61017 -12.55660 -12.40011 -12.32711 -12.21888 -12.01739 -11.90978 -11.69447 -11.62745 -11.32717 -10.69151 -10.59901 -10.52312 -10.23974 -9.76735 -8.99296 -8.21151 -6.30621 1.21128 1.41738 1.42170 1.51040 1.53198 1.86837 2.39828 2.85191 3.11220 3.23421 3.28665 3.64555 3.87578 3.93139 4.03206 4.12117 4.22075 4.23386 4.25334 4.26948 4.36972 4.44684 4.53368 4.56908 4.59117 4.60121 4.70888 4.78817 4.83047 4.86241 4.90254 4.91329 4.94985 5.02715 5.04100 5.14102 5.18347 5.25093 5.29560 5.44184 5.54746 5.63830 5.67718 6.03533 6.20423 6.28942 6.39334 6.60033 6.84929 7.04995 7.39071 8.89682 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.035164 B = 0.002852 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.069229 B = 9816.031955 C =10121.180368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C -0.039 4.039 4 C -0.158 4.158 5 C -0.084 4.084 6 C 0.064 3.936 7 O -0.424 6.424 8 C 0.025 3.975 9 C 0.521 3.479 10 O -0.583 6.583 11 N -0.604 5.604 12 C 0.123 3.877 13 C 0.059 3.941 14 N -0.538 5.538 15 C 0.211 3.789 16 C -0.523 4.523 17 H 0.063 0.937 18 C 0.003 3.997 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.266 1.266 24 C 0.028 3.972 25 C 0.106 3.894 26 H 0.083 0.917 27 H 0.116 0.884 28 H 0.158 0.842 29 H 0.065 0.935 30 H 0.102 0.898 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.010 0.990 42 H 0.078 0.922 43 H 0.011 0.989 44 H -0.041 1.041 45 H 0.264 0.736 46 H 0.085 0.915 47 H 0.039 0.961 48 H 0.084 0.916 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.949 -6.655 5.729 24.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.164 4.164 3 C -0.042 4.042 4 C -0.214 4.214 5 C -0.122 4.122 6 C -0.012 4.012 7 O -0.344 6.344 8 C -0.070 4.070 9 C 0.311 3.689 10 O -0.463 6.463 11 N -0.336 5.336 12 C 0.000 4.000 13 C -0.070 4.070 14 N -0.263 5.263 15 C 0.084 3.916 16 C -0.561 4.561 17 H 0.082 0.918 18 C -0.195 4.195 19 N -0.573 5.573 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.190 1.190 24 C -0.100 4.100 25 C -0.016 4.016 26 H 0.101 0.899 27 H 0.134 0.866 28 H 0.175 0.825 29 H 0.084 0.916 30 H 0.121 0.879 31 H 0.100 0.900 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.098 0.902 41 H 0.028 0.972 42 H 0.096 0.904 43 H 0.029 0.971 44 H -0.023 1.023 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.057 0.943 48 H 0.103 0.897 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 22.947 -5.872 5.917 24.414 hybrid contribution -1.720 -0.020 0.340 1.753 sum 21.227 -5.892 6.257 22.901 Atomic orbital electron populations 1.24479 0.97036 1.02825 0.99378 1.22848 0.95083 0.97150 1.01326 1.19822 0.94390 0.91120 0.98865 1.22329 0.99665 1.04777 0.94666 1.21153 0.96217 0.99143 0.95699 1.22674 0.92358 0.97960 0.88184 1.87841 1.50303 1.51548 1.44674 1.22923 0.91268 0.89884 1.02965 1.21014 0.81114 0.86243 0.80529 1.90658 1.72140 1.46223 1.37273 1.48300 1.32538 1.31486 1.21313 1.21635 0.86161 0.89696 1.02478 1.22226 0.96879 0.97869 0.90020 1.62000 1.10159 1.22838 1.31293 1.19348 0.84395 0.94714 0.93102 1.21462 0.96119 0.93904 1.44646 0.91838 1.25868 0.99440 0.98678 0.95549 1.70070 1.15964 1.22312 1.48998 0.85425 0.77423 0.79248 0.78781 1.19777 1.21011 1.19015 1.22755 0.92875 0.92969 1.01432 1.22536 0.96814 0.94185 0.88037 0.89874 0.86596 0.82492 0.91596 0.87907 0.89994 0.91785 0.92963 0.91461 0.90701 0.89045 0.93020 0.92675 0.89911 0.90179 0.97166 0.90409 0.97075 1.02302 0.92719 0.89641 0.94276 0.89745 0.85133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.49 9.91 67.78 0.67 -3.82 16 2 C -0.15 -2.54 6.75 25.64 0.17 -2.36 16 3 C -0.04 -0.78 0.51 -53.68 -0.03 -0.81 16 4 C -0.16 -2.17 7.46 71.98 0.54 -1.63 16 5 C -0.08 -1.81 3.91 30.59 0.12 -1.69 16 6 C 0.06 0.99 5.34 71.98 0.38 1.37 16 7 O -0.42 -8.25 10.70 -148.98 -1.59 -9.84 16 8 C 0.03 0.29 11.01 113.37 1.25 1.54 16 9 C 0.52 15.16 5.34 87.66 0.47 15.63 16 10 O -0.58 -21.59 15.44 -3.02 -0.05 -21.64 16 11 N -0.60 -17.35 1.91 -817.95 -1.57 -18.92 16 12 C 0.12 4.04 6.59 86.35 0.57 4.61 16 13 C 0.06 2.31 5.46 86.39 0.47 2.78 16 14 N -0.54 -22.08 4.62 -899.83 -4.16 -26.24 16 15 C 0.21 10.86 4.72 85.55 0.40 11.27 16 16 C -0.52 -28.98 8.41 25.60 0.22 -28.77 16 17 H 0.06 3.45 7.13 -2.91 -0.02 3.43 16 18 C 0.00 0.16 5.46 84.65 0.46 0.62 16 19 N -0.93 -55.33 13.29 21.45 0.28 -55.05 16 20 Si 0.97 43.87 29.54 68.60 2.03 45.90 16 21 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 24 C 0.03 0.90 5.09 86.38 0.44 1.34 16 25 C 0.11 2.58 3.82 86.35 0.33 2.91 16 26 H 0.08 2.45 4.18 -2.91 -0.01 2.44 16 27 H 0.12 2.32 8.06 -2.91 -0.02 2.30 16 28 H 0.16 1.66 7.00 -2.91 -0.02 1.64 16 29 H 0.06 0.96 8.12 -2.38 -0.02 0.94 16 30 H 0.10 0.79 6.92 -2.39 -0.02 0.78 16 31 H 0.08 1.12 4.61 -2.39 -0.01 1.11 16 32 H 0.06 1.56 8.10 -2.38 -0.02 1.54 16 33 H 0.05 1.39 8.09 -2.39 -0.02 1.37 16 34 H 0.07 0.82 6.62 -2.39 -0.02 0.80 16 35 H 0.07 0.82 6.64 -2.39 -0.02 0.80 16 36 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 39 H 0.08 2.81 7.08 -2.39 -0.02 2.79 16 40 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.08 3.30 6.67 -2.39 -0.02 3.28 16 43 H 0.01 0.61 7.97 -2.39 -0.02 0.59 16 44 H -0.04 -2.32 8.13 -2.38 -0.02 -2.34 16 45 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 46 H 0.09 2.61 7.99 -2.39 -0.02 2.59 16 47 H 0.04 1.27 5.31 -2.39 -0.01 1.26 16 48 H 0.08 1.94 8.06 -2.39 -0.02 1.93 16 49 H 0.13 2.38 3.21 -2.38 -0.01 2.37 16 Total: -1.00 -71.07 365.49 2.34 -68.73 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.93 Total: 14.08 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.47 Total: 2.98 kcal Atomic # 7 Polarization: -94.77 SS G_CDS: -5.44 Total: -100.21 kcal Atomic # 8 Polarization: -29.84 SS G_CDS: -1.64 Total: -31.48 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -71.07 2.34 -68.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602205726.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.137 kcal (2) G-P(sol) polarization free energy of solvation -71.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds