Wall clock time and date at job start Fri Apr 10 2020 22:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.53007 * 109.47098 * 119.99837 * 2 1 3 5 5 N 1.46500 * 109.47012 * 64.99987 * 4 2 1 6 6 C 1.46757 * 124.35225 * 270.04986 * 5 4 2 7 7 C 1.54692 * 105.53809 * 163.05638 * 6 5 4 8 8 H 1.08998 * 110.94133 * 267.20132 * 7 6 5 9 9 C 1.50694 * 111.08727 * 143.37229 * 7 6 5 10 10 O 1.21288 * 120.00233 * 341.06434 * 9 7 6 11 11 N 1.34776 * 120.00063 * 161.05660 * 9 7 6 12 12 C 1.46497 * 119.99883 * 5.59767 * 11 9 7 13 13 C 1.50704 * 109.47191 * 89.99349 * 12 11 9 14 14 H 1.08000 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00015 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47331 * 89.99940 * 17 15 13 19 19 H 1.48501 * 109.46985 * 209.99886 * 17 15 13 20 20 H 1.48497 * 109.47026 * 329.99779 * 17 15 13 21 21 C 1.46506 * 120.00316 * 185.59126 * 11 9 7 22 22 C 1.52998 * 109.47086 * 299.52346 * 21 11 9 23 23 C 1.53003 * 109.46558 * 59.52008 * 21 11 9 24 24 C 1.54624 * 101.66642 * 25.25559 * 7 6 5 25 25 C 1.34419 * 124.34674 * 90.02414 * 5 4 2 26 26 O 1.21286 * 124.94619 * 0.46478 * 25 5 4 27 27 H 1.08994 * 109.47254 * 60.00147 * 1 2 3 28 28 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46995 * 299.99883 * 1 2 3 30 30 H 1.08996 * 109.47205 * 239.99872 * 2 1 3 31 31 H 1.08999 * 109.46782 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46972 * 300.00026 * 3 2 1 33 33 H 1.09004 * 109.47127 * 60.00198 * 3 2 1 34 34 H 1.08995 * 109.47203 * 305.00363 * 4 2 1 35 35 H 1.08997 * 109.46946 * 184.99775 * 4 2 1 36 36 H 1.09006 * 110.24564 * 281.96573 * 6 5 4 37 37 H 1.09001 * 110.24797 * 43.86720 * 6 5 4 38 38 H 1.08998 * 109.47273 * 209.99488 * 12 11 9 39 39 H 1.09001 * 109.47234 * 329.99941 * 12 11 9 40 40 H 0.96996 * 119.99600 * 180.02562 * 16 15 13 41 41 H 1.08990 * 109.47370 * 179.52170 * 21 11 9 42 42 H 1.09005 * 109.47050 * 66.60047 * 22 21 11 43 43 H 1.09002 * 109.47048 * 186.59723 * 22 21 11 44 44 H 1.08999 * 109.47101 * 306.60189 * 22 21 11 45 45 H 1.08997 * 109.47142 * 53.84249 * 23 21 11 46 46 H 1.09008 * 109.46852 * 173.83660 * 23 21 11 47 47 H 1.08996 * 109.47064 * 293.83474 * 23 21 11 48 48 H 1.08997 * 110.48804 * 216.60160 * 24 7 6 49 49 H 1.09002 * 110.48748 * 94.09727 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3976 -2.6701 1.7296 7 6 0.2257 -4.0599 1.0723 8 1 -0.3724 -3.9899 0.1638 9 6 -0.3784 -5.0458 2.0387 10 8 -0.3448 -4.8248 3.2308 11 7 -0.9562 -6.1730 1.5784 12 6 -0.8897 -6.5004 0.1520 13 6 0.3441 -7.3228 -0.1177 14 1 1.0116 -7.5766 0.6925 15 6 0.6200 -7.7520 -1.3985 16 7 -0.1931 -7.4434 -2.3850 17 14 2.1489 -8.7720 -1.7326 18 1 1.8241 -10.2136 -1.5859 19 1 2.6263 -8.5103 -3.1142 20 1 3.2117 -8.4029 -0.7634 21 6 -1.6507 -7.0711 2.5044 22 6 -0.6654 -7.5762 3.5603 23 6 -2.7899 -6.3145 3.1904 24 6 1.6897 -4.4334 0.7435 25 6 2.4003 -3.1022 0.6358 26 8 3.4870 -2.9343 0.1240 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 0.4656 -2.7731 2.8126 37 1 -0.4359 -2.0195 1.4648 38 1 -1.7749 -7.0695 -0.1318 39 1 -0.8472 -5.5800 -0.4304 40 1 0.0009 -7.7457 -3.2860 41 1 -2.0576 -7.9182 1.9525 42 1 -0.3477 -6.7439 4.1885 43 1 -1.1503 -8.3327 4.1773 44 1 0.2038 -8.0118 3.0674 45 1 -3.4321 -5.8618 2.4350 46 1 -3.3740 -7.0079 3.7956 47 1 -2.3753 -5.5349 3.8295 48 1 1.7428 -4.9719 -0.2027 49 1 2.1203 -5.0318 1.5464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:16 Heat of formation + Delta-G solvation = -84.712864 kcal Electronic energy + Delta-G solvation = -27781.805350 eV Core-core repulsion = 24129.389477 eV Total energy + Delta-G solvation = -3652.415873 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57966 -39.10556 -36.58819 -35.79406 -35.08527 -33.28033 -32.04100 -30.86544 -27.70662 -27.18216 -26.84252 -26.66662 -26.23950 -23.37757 -22.71662 -20.99097 -20.54218 -19.01477 -18.14379 -16.80498 -16.67053 -16.46415 -15.70178 -15.35872 -15.09835 -14.64953 -14.43841 -14.22825 -13.93003 -13.58664 -13.42505 -13.05639 -12.92037 -12.82134 -12.58137 -12.48061 -12.35605 -12.28115 -11.90043 -11.77333 -11.62606 -11.48042 -11.26447 -11.11094 -10.99399 -10.93150 -10.89036 -10.83025 -10.73833 -10.66016 -10.40114 -10.08903 -9.73945 -9.51779 -8.90479 -8.57138 -8.44531 -7.79069 -6.22026 -4.29069 2.90276 3.13094 3.22987 3.25701 3.31674 3.36439 3.78761 4.31794 4.62635 4.78322 4.80261 4.90721 5.00398 5.11177 5.12685 5.32290 5.37413 5.42975 5.48763 5.55838 5.61482 5.63783 5.68683 5.70475 5.76140 5.80919 5.88421 5.97398 6.02005 6.03319 6.16154 6.22262 6.23583 6.28614 6.31883 6.40691 6.50119 6.66701 6.75112 6.76087 6.81717 7.12323 7.33806 7.50773 7.73199 8.00521 8.26872 8.47652 8.74445 8.91874 9.39238 10.84491 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.005208 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.483033 B = 5374.869521 C = 6883.730558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.143 4.143 4 C 0.132 3.868 5 N -0.619 5.619 6 C 0.111 3.889 7 C -0.115 4.115 8 H 0.112 0.888 9 C 0.531 3.469 10 O -0.565 6.565 11 N -0.586 5.586 12 C 0.235 3.765 13 C -0.535 4.535 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.271 1.271 21 C 0.148 3.852 22 C -0.163 4.163 23 C -0.164 4.164 24 C -0.130 4.130 25 C 0.522 3.478 26 O -0.538 6.538 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.053 0.947 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.079 0.921 38 H 0.035 0.965 39 H 0.039 0.961 40 H 0.266 0.734 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.049 0.951 44 H 0.057 0.943 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.125 0.875 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 11.007 6.722 13.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.136 4.136 3 C -0.201 4.201 4 C 0.010 3.990 5 N -0.353 5.353 6 C -0.012 4.012 7 C -0.137 4.137 8 H 0.130 0.870 9 C 0.319 3.681 10 O -0.447 6.447 11 N -0.316 5.316 12 C 0.115 3.885 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.195 1.195 21 C 0.044 3.956 22 C -0.221 4.221 23 C -0.222 4.222 24 C -0.170 4.170 25 C 0.310 3.690 26 O -0.415 6.415 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.076 0.924 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.144 0.856 49 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.108 11.228 6.854 13.322 hybrid contribution 0.683 -0.773 -0.564 1.176 sum -1.424 10.455 6.290 12.284 Atomic orbital electron populations 1.21944 0.94966 1.02285 1.01507 1.21560 0.96465 0.96259 0.99301 1.21761 1.01086 0.95475 1.01797 1.21403 1.00584 0.79427 0.97568 1.48283 1.20872 1.07365 1.58789 1.22186 0.85953 0.93272 0.99757 1.22147 0.97955 0.93709 0.99863 0.87017 1.19802 0.77837 0.82321 0.88176 1.90545 1.60129 1.77558 1.16466 1.48314 1.51951 1.20349 1.10977 1.19530 0.97947 0.97015 0.74016 1.21447 1.08219 1.33853 0.93859 0.91968 1.24904 0.96780 0.95904 0.95979 1.69906 1.36890 1.45361 1.00646 0.86590 0.83191 0.80486 0.77898 1.20575 1.21024 1.19537 1.20850 0.91958 0.92180 0.90573 1.22175 0.99632 1.01270 0.99066 1.22182 0.97862 1.01323 1.00855 1.22235 0.92567 0.95305 1.06907 1.21103 0.84605 0.87058 0.76209 1.90679 1.20580 1.85078 1.45133 0.92765 0.91945 0.92792 0.90661 0.92563 0.92484 0.92650 0.90570 0.90230 0.89303 0.90242 0.94673 0.94286 0.92478 0.89814 0.90797 0.93170 0.92386 0.93063 0.92610 0.91036 0.85641 0.87953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.58 37.16 0.32 -1.21 16 2 C -0.12 -1.29 3.13 -90.62 -0.28 -1.57 16 3 C -0.14 -1.28 9.19 37.16 0.34 -0.94 16 4 C 0.13 1.59 5.36 -4.04 -0.02 1.57 16 5 N -0.62 -9.06 2.71 -172.28 -0.47 -9.53 16 6 C 0.11 1.55 6.28 -3.01 -0.02 1.53 16 7 C -0.12 -1.90 2.66 -90.03 -0.24 -2.13 16 8 H 0.11 1.84 6.42 -51.93 -0.33 1.51 16 9 C 0.53 9.70 6.23 -10.99 -0.07 9.63 16 10 O -0.57 -10.85 11.98 5.55 0.07 -10.78 16 11 N -0.59 -11.12 2.41 -167.47 -0.40 -11.53 16 12 C 0.23 5.10 5.00 -5.19 -0.03 5.08 16 13 C -0.54 -12.95 8.33 -34.44 -0.29 -13.23 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -23.60 13.29 55.43 0.74 -22.86 16 17 Si 0.89 20.30 29.54 -169.99 -5.02 15.28 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.15 2.53 3.28 -67.93 -0.22 2.31 16 22 C -0.16 -2.72 9.00 37.16 0.33 -2.38 16 23 C -0.16 -2.44 9.02 37.16 0.34 -2.11 16 24 C -0.13 -2.35 5.97 -26.74 -0.16 -2.51 16 25 C 0.52 9.41 8.02 -10.86 -0.09 9.32 16 26 O -0.54 -11.39 17.59 5.55 0.10 -11.29 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.71 5.65 -51.93 -0.29 0.41 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 1.02 7.92 -51.93 -0.41 0.61 16 36 H 0.09 1.31 6.86 -51.93 -0.36 0.95 16 37 H 0.08 0.95 5.89 -51.93 -0.31 0.64 16 38 H 0.04 0.82 7.92 -51.93 -0.41 0.41 16 39 H 0.04 0.87 5.89 -51.93 -0.31 0.56 16 40 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 41 H 0.08 1.44 7.79 -51.93 -0.40 1.04 16 42 H 0.07 1.31 6.24 -51.93 -0.32 0.99 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.71 8.14 -51.92 -0.42 0.28 16 47 H 0.07 1.15 6.51 -51.93 -0.34 0.81 16 48 H 0.13 2.53 7.49 -51.93 -0.39 2.14 16 49 H 0.10 1.90 7.89 -51.93 -0.41 1.49 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -28.06 382.46 -7.88 -35.94 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: -8.48 Total: 4.02 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -0.18 Total: 4.98 kcal Atomic # 7 Polarization: -43.78 SS G_CDS: -0.13 Total: -43.92 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: 0.16 Total: -22.07 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -28.06 -7.88 -35.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.770 kcal (2) G-P(sol) polarization free energy of solvation -28.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds