Wall clock time and date at job start Fri Apr 10 2020 22:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47049 * 2 1 4 4 C 1.53007 * 109.47098 * 119.99837 * 2 1 3 5 5 N 1.46500 * 109.47012 * 64.99987 * 4 2 1 6 6 C 1.46757 * 124.35225 * 270.04986 * 5 4 2 7 7 C 1.54692 * 105.53809 * 163.05638 * 6 5 4 8 8 H 1.08998 * 110.94133 * 267.20132 * 7 6 5 9 9 C 1.50694 * 111.08727 * 143.37229 * 7 6 5 10 10 O 1.21288 * 120.00233 * 341.06434 * 9 7 6 11 11 N 1.34776 * 120.00063 * 161.05660 * 9 7 6 12 12 C 1.46497 * 119.99883 * 5.59767 * 11 9 7 13 13 C 1.50704 * 109.47191 * 89.99349 * 12 11 9 14 14 H 1.08000 * 120.00032 * 0.02562 * 13 12 11 15 15 C 1.37875 * 120.00015 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00088 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 119.99894 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47331 * 89.99940 * 17 15 13 19 19 H 1.48501 * 109.46985 * 209.99886 * 17 15 13 20 20 H 1.48497 * 109.47026 * 329.99779 * 17 15 13 21 21 C 1.46506 * 120.00316 * 185.59126 * 11 9 7 22 22 C 1.52998 * 109.47086 * 299.52346 * 21 11 9 23 23 C 1.53003 * 109.46558 * 59.52008 * 21 11 9 24 24 C 1.54624 * 101.66642 * 25.25559 * 7 6 5 25 25 C 1.34419 * 124.34674 * 90.02414 * 5 4 2 26 26 O 1.21286 * 124.94619 * 0.46478 * 25 5 4 27 27 H 1.08994 * 109.47254 * 60.00147 * 1 2 3 28 28 H 1.08997 * 109.46942 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46995 * 299.99883 * 1 2 3 30 30 H 1.08996 * 109.47205 * 239.99872 * 2 1 3 31 31 H 1.08999 * 109.46782 * 180.02562 * 3 2 1 32 32 H 1.08994 * 109.46972 * 300.00026 * 3 2 1 33 33 H 1.09004 * 109.47127 * 60.00198 * 3 2 1 34 34 H 1.08995 * 109.47203 * 305.00363 * 4 2 1 35 35 H 1.08997 * 109.46946 * 184.99775 * 4 2 1 36 36 H 1.09006 * 110.24564 * 281.96573 * 6 5 4 37 37 H 1.09001 * 110.24797 * 43.86720 * 6 5 4 38 38 H 1.08998 * 109.47273 * 209.99488 * 12 11 9 39 39 H 1.09001 * 109.47234 * 329.99941 * 12 11 9 40 40 H 0.96996 * 119.99600 * 180.02562 * 16 15 13 41 41 H 1.08990 * 109.47370 * 179.52170 * 21 11 9 42 42 H 1.09005 * 109.47050 * 66.60047 * 22 21 11 43 43 H 1.09002 * 109.47048 * 186.59723 * 22 21 11 44 44 H 1.08999 * 109.47101 * 306.60189 * 22 21 11 45 45 H 1.08997 * 109.47142 * 53.84249 * 23 21 11 46 46 H 1.09008 * 109.46852 * 173.83660 * 23 21 11 47 47 H 1.08996 * 109.47064 * 293.83474 * 23 21 11 48 48 H 1.08997 * 110.48804 * 216.60160 * 24 7 6 49 49 H 1.09002 * 110.48748 * 94.09727 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1907 6 6 0.3976 -2.6701 1.7296 7 6 0.2257 -4.0599 1.0723 8 1 -0.3724 -3.9899 0.1638 9 6 -0.3784 -5.0458 2.0387 10 8 -0.3448 -4.8248 3.2308 11 7 -0.9562 -6.1730 1.5784 12 6 -0.8897 -6.5004 0.1520 13 6 0.3441 -7.3228 -0.1177 14 1 1.0116 -7.5766 0.6925 15 6 0.6200 -7.7520 -1.3985 16 7 -0.1931 -7.4434 -2.3850 17 14 2.1489 -8.7720 -1.7326 18 1 1.8241 -10.2136 -1.5859 19 1 2.6263 -8.5103 -3.1142 20 1 3.2117 -8.4029 -0.7634 21 6 -1.6507 -7.0711 2.5044 22 6 -0.6654 -7.5762 3.5603 23 6 -2.7899 -6.3145 3.1904 24 6 1.6897 -4.4334 0.7435 25 6 2.4003 -3.1022 0.6358 26 8 3.4870 -2.9343 0.1240 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.1300 1.4424 -0.0005 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6054 -0.2618 2.1370 35 1 3.1263 -0.6444 1.2952 36 1 0.4656 -2.7731 2.8126 37 1 -0.4359 -2.0195 1.4648 38 1 -1.7749 -7.0695 -0.1318 39 1 -0.8472 -5.5800 -0.4304 40 1 0.0009 -7.7457 -3.2860 41 1 -2.0576 -7.9182 1.9525 42 1 -0.3477 -6.7439 4.1885 43 1 -1.1503 -8.3327 4.1773 44 1 0.2038 -8.0118 3.0674 45 1 -3.4321 -5.8618 2.4350 46 1 -3.3740 -7.0079 3.7956 47 1 -2.3753 -5.5349 3.8295 48 1 1.7428 -4.9719 -0.2027 49 1 2.1203 -5.0318 1.5464 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814900.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:15 Heat of formation + Delta-G solvation = -98.861847 kcal Electronic energy + Delta-G solvation = -27782.418896 eV Core-core repulsion = 24129.389477 eV Total energy + Delta-G solvation = -3653.029419 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.97148 -40.55563 -37.86196 -37.13021 -36.46345 -34.98982 -33.55572 -32.22609 -29.05342 -28.74123 -27.95328 -27.90041 -27.30794 -24.97022 -24.31020 -22.32837 -21.55831 -20.28469 -19.62191 -18.53240 -18.22101 -17.85367 -17.06767 -16.77910 -16.42974 -16.20811 -15.83621 -15.62985 -15.10852 -14.97163 -14.60699 -14.46495 -14.37617 -14.10542 -13.84381 -13.80426 -13.73857 -13.41387 -13.18627 -13.07591 -12.85095 -12.75627 -12.71692 -12.64819 -12.40076 -12.38884 -12.14513 -12.12324 -12.06297 -11.78246 -11.69386 -11.63218 -11.54553 -10.98562 -10.59574 -10.32487 -9.68232 -9.39511 -8.18404 -6.29282 1.38490 1.43450 1.45216 1.50109 1.71055 1.96201 2.30587 2.44441 3.13003 3.28697 3.52038 3.70972 3.87710 3.93399 3.96991 4.07816 4.16302 4.28954 4.33437 4.46395 4.47832 4.50559 4.60879 4.63913 4.76408 4.80476 4.84332 4.84972 4.92803 4.95114 5.02079 5.03553 5.04746 5.08206 5.12631 5.24719 5.25782 5.35173 5.37685 5.43692 5.48510 5.61612 5.71871 5.97084 6.00837 6.10209 6.62423 6.87760 7.07663 7.34208 7.45347 8.86602 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011258 B = 0.005208 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.483033 B = 5374.869521 C = 6883.730558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.138 4.138 4 C 0.126 3.874 5 N -0.606 5.606 6 C 0.121 3.879 7 C -0.112 4.112 8 H 0.112 0.888 9 C 0.532 3.468 10 O -0.570 6.570 11 N -0.590 5.590 12 C 0.249 3.751 13 C -0.530 4.530 14 H 0.052 0.948 15 C 0.029 3.971 16 N -0.917 5.917 17 Si 0.937 3.063 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.137 3.863 22 C -0.154 4.154 23 C -0.152 4.152 24 C -0.126 4.126 25 C 0.518 3.482 26 O -0.576 6.576 27 H 0.059 0.941 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.109 0.891 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.110 0.890 38 H 0.022 0.978 39 H 0.035 0.965 40 H 0.265 0.735 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.078 0.922 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.060 0.940 48 H 0.099 0.901 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.768 12.304 8.150 15.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.133 4.133 3 C -0.196 4.196 4 C 0.005 3.995 5 N -0.338 5.338 6 C -0.001 4.001 7 C -0.133 4.133 8 H 0.130 0.870 9 C 0.320 3.680 10 O -0.452 6.452 11 N -0.320 5.320 12 C 0.128 3.872 13 C -0.569 4.569 14 H 0.070 0.930 15 C -0.171 4.171 16 N -0.556 5.556 17 Si 0.764 3.236 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.199 1.199 21 C 0.034 3.966 22 C -0.212 4.212 23 C -0.210 4.210 24 C -0.166 4.166 25 C 0.307 3.693 26 O -0.456 6.456 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.062 0.938 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.040 0.960 39 H 0.053 0.947 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.097 0.903 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.236 12.542 8.320 15.395 hybrid contribution 1.008 -1.171 -0.950 1.813 sum -2.228 11.371 7.370 13.733 Atomic orbital electron populations 1.21933 0.93900 1.01791 1.02872 1.21507 0.97310 0.97225 0.97277 1.21724 1.00891 0.93918 1.03069 1.21700 1.00470 0.77773 0.99517 1.48328 1.20338 1.08078 1.57091 1.22221 0.86410 0.92124 0.99362 1.22119 0.96500 0.94885 0.99841 0.87003 1.19975 0.77488 0.82246 0.88300 1.90543 1.60261 1.77667 1.16718 1.48294 1.52540 1.21041 1.10139 1.19166 0.96181 0.96110 0.75695 1.21601 1.08599 1.33336 0.93347 0.92984 1.25435 0.98653 0.96937 0.96116 1.69972 1.38159 1.46641 1.00845 0.85869 0.80788 0.79632 0.77357 1.19968 1.21186 1.19932 1.21097 0.92750 0.92290 0.90452 1.22084 0.98910 1.01433 0.98807 1.22069 0.96988 1.01253 1.00690 1.22061 0.93945 0.95447 1.05165 1.21024 0.84317 0.87645 0.76361 1.90650 1.22222 1.85618 1.47155 0.92222 0.93274 0.90682 0.93818 0.92921 0.91882 0.90691 0.87332 0.91177 0.89164 0.87223 0.96017 0.94726 0.92546 0.90068 0.91880 0.90350 0.94587 0.92922 0.89980 0.92082 0.88253 0.88874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 8.58 71.98 0.62 -2.01 16 2 C -0.11 -2.34 3.13 -10.79 -0.03 -2.37 16 3 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 4 C 0.13 2.80 5.36 86.38 0.46 3.27 16 5 N -0.61 -17.13 2.71 -817.56 -2.21 -19.35 16 6 C 0.12 3.16 6.28 86.91 0.55 3.70 16 7 C -0.11 -3.65 2.66 -10.41 -0.03 -3.67 16 8 H 0.11 3.67 6.42 -2.39 -0.02 3.65 16 9 C 0.53 19.09 6.23 87.66 0.55 19.64 16 10 O -0.57 -21.15 11.98 -3.06 -0.04 -21.19 16 11 N -0.59 -22.23 2.41 -802.14 -1.93 -24.16 16 12 C 0.25 10.96 5.00 85.64 0.43 11.39 16 13 C -0.53 -26.03 8.33 25.60 0.21 -25.82 16 14 H 0.05 2.63 7.81 -2.91 -0.02 2.61 16 15 C 0.03 1.49 5.46 84.65 0.46 1.95 16 16 N -0.92 -49.19 13.29 21.45 0.28 -48.91 16 17 Si 0.94 42.12 29.54 68.60 2.03 44.15 16 18 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 21 C 0.14 4.54 3.28 44.99 0.15 4.69 16 22 C -0.15 -4.96 9.00 71.98 0.65 -4.31 16 23 C -0.15 -4.19 9.02 71.98 0.65 -3.54 16 24 C -0.13 -4.67 5.97 30.59 0.18 -4.49 16 25 C 0.52 19.00 8.02 87.90 0.71 19.70 16 26 O -0.58 -25.15 17.59 -3.05 -0.05 -25.21 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.05 1.00 5.65 -2.39 -0.01 0.99 16 29 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 34 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 36 H 0.09 2.43 6.86 -2.38 -0.02 2.41 16 37 H 0.11 2.27 5.89 -2.39 -0.01 2.26 16 38 H 0.02 1.02 7.92 -2.39 -0.02 1.00 16 39 H 0.03 1.57 5.89 -2.39 -0.01 1.55 16 40 H 0.27 13.74 8.31 -92.71 -0.77 12.97 16 41 H 0.08 2.72 7.79 -2.39 -0.02 2.70 16 42 H 0.06 2.16 6.24 -2.38 -0.01 2.15 16 43 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.08 1.82 8.14 -2.38 -0.02 1.81 16 47 H 0.06 1.82 6.51 -2.39 -0.02 1.81 16 48 H 0.10 4.22 7.49 -2.39 -0.02 4.20 16 49 H 0.09 3.59 7.89 -2.39 -0.02 3.57 16 Total: -1.00 -60.82 382.46 5.20 -55.62 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.92 Total: 22.41 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 6.21 Total: 16.64 kcal Atomic # 7 Polarization: -88.56 SS G_CDS: -3.86 Total: -92.42 kcal Atomic # 8 Polarization: -46.30 SS G_CDS: -0.09 Total: -46.39 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -60.82 5.20 -55.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814900.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.242 kcal (2) G-P(sol) polarization free energy of solvation -60.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds