Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47818 * 2 1 4 4 C 1.53005 * 109.46572 * 120.00134 * 2 1 3 5 5 N 1.46502 * 109.46912 * 174.99964 * 4 2 1 6 6 C 1.46760 * 124.35108 * 89.99524 * 5 4 2 7 7 C 1.54483 * 105.47384 * 197.03648 * 6 5 4 8 8 H 1.08996 * 110.97119 * 92.74156 * 7 6 5 9 9 C 1.50699 * 110.97035 * 216.46721 * 7 6 5 10 10 O 1.21276 * 120.00003 * 25.02705 * 9 7 6 11 11 N 1.34775 * 119.99864 * 205.02104 * 9 7 6 12 12 C 1.46497 * 120.00062 * 355.57023 * 11 9 7 13 13 C 1.50707 * 109.47071 * 269.99496 * 12 11 9 14 14 H 1.07997 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47105 * 89.99660 * 17 15 13 19 19 H 1.48493 * 109.47477 * 210.00084 * 17 15 13 20 20 H 1.48501 * 109.46917 * 330.00142 * 17 15 13 21 21 C 1.46505 * 120.00030 * 175.56382 * 11 9 7 22 22 C 1.53002 * 109.46940 * 60.08438 * 21 11 9 23 23 C 1.52991 * 109.47153 * 300.08729 * 21 11 9 24 24 C 1.54630 * 101.79800 * 334.60554 * 7 6 5 25 25 C 1.34427 * 124.34664 * 270.02025 * 5 4 2 26 26 O 1.21279 * 124.93933 * 359.60086 * 25 5 4 27 27 H 1.08999 * 109.46976 * 300.00554 * 1 2 3 28 28 H 1.09001 * 109.46646 * 60.00025 * 1 2 3 29 29 H 1.08990 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46976 * 239.99446 * 2 1 3 31 31 H 1.09005 * 109.46944 * 59.99414 * 3 2 1 32 32 H 1.08997 * 109.47123 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46318 * 300.00087 * 3 2 1 34 34 H 1.08994 * 109.47240 * 54.99556 * 4 2 1 35 35 H 1.09005 * 109.46784 * 294.99342 * 4 2 1 36 36 H 1.09006 * 110.24461 * 78.04071 * 6 5 4 37 37 H 1.08993 * 110.24803 * 316.03568 * 6 5 4 38 38 H 1.09003 * 109.47581 * 29.99529 * 12 11 9 39 39 H 1.08999 * 109.47399 * 150.00066 * 12 11 9 40 40 H 0.96999 * 120.00019 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47124 * 180.02562 * 21 11 9 42 42 H 1.09003 * 109.46906 * 293.65823 * 22 21 11 43 43 H 1.09000 * 109.46992 * 53.65061 * 22 21 11 44 44 H 1.08991 * 109.47301 * 173.65616 * 22 21 11 45 45 H 1.09000 * 109.47432 * 187.26116 * 23 21 11 46 46 H 1.09007 * 109.46892 * 307.25426 * 23 21 11 47 47 H 1.08998 * 109.47692 * 67.25827 * 23 21 11 48 48 H 1.09000 * 110.48756 * 143.46056 * 24 7 6 49 49 H 1.09006 * 110.48718 * 266.10206 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.4249 0.1770 1.7305 7 6 5.7894 -0.1232 1.0714 8 1 5.9215 0.4645 0.1630 9 6 6.9202 0.1204 2.0372 10 8 6.7223 0.0537 3.2319 11 7 8.1515 0.4123 1.5734 12 6 8.4139 0.3975 0.1322 13 6 8.8592 -0.9811 -0.2832 14 1 8.9384 -1.7675 0.4527 15 6 9.1655 -1.2382 -1.6026 16 7 9.0695 -0.2804 -2.4987 17 14 9.7168 -2.9471 -2.1177 18 1 8.5306 -3.7576 -2.4936 19 1 10.6334 -2.8419 -3.2812 20 1 10.4246 -3.6004 -0.9874 21 6 9.2275 0.7445 2.5105 22 6 9.4609 -0.4342 3.4577 23 6 8.8338 1.9805 3.3217 24 6 5.6572 -1.6283 0.7423 25 6 4.1646 -1.8544 0.6351 26 8 3.6439 -2.8218 0.1215 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1302 1.4423 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6052 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 4.4992 0.0775 2.8135 37 1 4.0903 1.1798 1.4652 38 1 7.5036 0.6626 -0.4057 39 1 9.1973 1.1182 -0.1020 40 1 9.2847 -0.4614 -3.4271 41 1 10.1426 0.9498 1.9549 42 1 8.5851 -0.5689 4.0925 43 1 9.6305 -1.3400 2.8756 44 1 10.3331 -0.2333 4.0796 45 1 9.6818 2.3044 3.9251 46 1 8.5430 2.7827 2.6434 47 1 7.9961 1.7350 3.9745 48 1 6.1472 -1.8563 -0.2043 49 1 6.0777 -2.2329 1.5460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000608814910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -84.277951 kcal Electronic energy + Delta-G solvation = -27756.743444 eV Core-core repulsion = 24104.346431 eV Total energy + Delta-G solvation = -3652.397014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59665 -39.11419 -36.60092 -35.81056 -35.08128 -33.27724 -32.04390 -30.89114 -27.72205 -27.17223 -26.86793 -26.66910 -26.24255 -23.39264 -22.73068 -20.97672 -20.55217 -19.04021 -18.14812 -16.81430 -16.68618 -16.46775 -15.72479 -15.36062 -15.09982 -14.65740 -14.44196 -14.23217 -13.94422 -13.59724 -13.43094 -13.04411 -12.93505 -12.81875 -12.61567 -12.49218 -12.35648 -12.28785 -11.89979 -11.77911 -11.63713 -11.49647 -11.28014 -11.12662 -11.00203 -10.95340 -10.88444 -10.83006 -10.74312 -10.66085 -10.39881 -10.07251 -9.74791 -9.54221 -8.90657 -8.57107 -8.46146 -7.79313 -6.22406 -4.29572 2.87618 3.11253 3.23286 3.25571 3.31046 3.35071 3.78448 4.31231 4.60951 4.78474 4.80421 4.90475 5.00210 5.10356 5.12074 5.31137 5.36712 5.42488 5.48744 5.55851 5.61097 5.64101 5.68161 5.69661 5.76180 5.80617 5.88164 5.94939 6.01669 6.03302 6.16098 6.21893 6.23647 6.27634 6.30953 6.40731 6.43319 6.66752 6.74461 6.74964 6.81201 7.12285 7.31767 7.50321 7.72797 8.00146 8.26697 8.45398 8.74322 8.91818 9.38909 10.84164 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.005165 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.706684 B = 5419.504310 C = 6862.110537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C -0.150 4.150 4 C 0.132 3.868 5 N -0.618 5.618 6 C 0.111 3.889 7 C -0.117 4.117 8 H 0.114 0.886 9 C 0.531 3.469 10 O -0.566 6.566 11 N -0.586 5.586 12 C 0.234 3.766 13 C -0.536 4.536 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.890 5.890 17 Si 0.891 3.109 18 H -0.276 1.276 19 H -0.285 1.285 20 H -0.273 1.273 21 C 0.148 3.852 22 C -0.164 4.164 23 C -0.164 4.164 24 C -0.130 4.130 25 C 0.522 3.478 26 O -0.538 6.538 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.080 0.920 38 H 0.040 0.960 39 H 0.036 0.964 40 H 0.265 0.735 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.057 0.943 44 H 0.050 0.950 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.071 0.929 48 H 0.123 0.877 49 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.547 5.177 7.122 12.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.136 4.136 3 C -0.207 4.207 4 C 0.010 3.990 5 N -0.352 5.352 6 C -0.012 4.012 7 C -0.139 4.139 8 H 0.132 0.868 9 C 0.318 3.682 10 O -0.447 6.447 11 N -0.315 5.315 12 C 0.115 3.885 13 C -0.574 4.574 14 H 0.080 0.920 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.718 3.282 18 H -0.202 1.202 19 H -0.211 1.211 20 H -0.198 1.198 21 C 0.044 3.956 22 C -0.222 4.222 23 C -0.222 4.222 24 C -0.170 4.170 25 C 0.311 3.689 26 O -0.415 6.415 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.054 0.946 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.090 0.910 48 H 0.141 0.859 49 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -9.928 4.696 7.259 13.165 hybrid contribution 0.533 -0.822 -0.672 1.188 sum -9.395 3.875 6.587 12.110 Atomic orbital electron populations 1.21761 0.94708 1.01836 1.01810 1.21561 0.95788 0.96961 0.99278 1.21946 1.01799 0.95451 1.01522 1.21409 0.78632 1.01336 0.97601 1.48271 1.05844 1.22414 1.58692 1.22167 0.87306 0.92025 0.99663 1.22165 0.93123 0.98486 1.00082 0.86773 1.19801 0.83778 0.76402 0.88184 1.90544 1.83870 1.53898 1.16393 1.48326 1.08126 1.65475 1.09614 1.19540 0.97707 0.97832 0.73456 1.21451 1.46380 0.95973 0.93609 0.91963 1.24907 0.95080 0.97184 0.96407 1.69907 1.48117 1.32248 1.02581 0.86591 0.78918 0.84318 0.78339 1.20224 1.21110 1.19751 1.20852 0.90284 0.94105 0.90337 1.22173 1.01790 0.98485 0.99712 1.22181 1.02187 0.97359 1.00460 1.22219 0.93175 0.95061 1.06579 1.21066 0.90029 0.81570 0.76232 1.90678 1.74597 1.31127 1.45090 0.92647 0.92473 0.92569 0.90657 0.92794 0.91924 0.92739 0.90223 0.90549 0.89348 0.90210 0.94267 0.94634 0.92483 0.89805 0.90800 0.92395 0.93140 0.92633 0.93052 0.91035 0.85910 0.87949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.12 -1.29 3.13 -90.62 -0.28 -1.58 16 3 C -0.15 -1.54 8.58 37.16 0.32 -1.22 16 4 C 0.13 1.58 5.35 -4.04 -0.02 1.56 16 5 N -0.62 -9.01 2.71 -172.38 -0.47 -9.47 16 6 C 0.11 1.55 6.29 -3.12 -0.02 1.53 16 7 C -0.12 -1.93 2.83 -90.14 -0.26 -2.19 16 8 H 0.11 1.92 6.08 -51.93 -0.32 1.61 16 9 C 0.53 9.70 6.18 -10.99 -0.07 9.63 16 10 O -0.57 -10.86 12.07 5.56 0.07 -10.79 16 11 N -0.59 -11.13 2.41 -167.47 -0.40 -11.53 16 12 C 0.23 5.11 5.01 -5.19 -0.03 5.08 16 13 C -0.54 -12.99 9.17 -34.44 -0.32 -13.31 16 14 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 15 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 16 N -0.89 -23.63 13.29 55.43 0.74 -22.89 16 17 Si 0.89 20.25 29.54 -169.99 -5.02 15.23 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 19 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 21 C 0.15 2.53 3.28 -67.93 -0.22 2.31 16 22 C -0.16 -2.72 9.00 37.16 0.33 -2.39 16 23 C -0.16 -2.44 9.01 37.15 0.33 -2.11 16 24 C -0.13 -2.32 6.41 -26.71 -0.17 -2.49 16 25 C 0.52 9.33 8.02 -10.83 -0.09 9.25 16 26 O -0.54 -11.27 17.59 5.56 0.10 -11.18 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.72 5.65 -51.93 -0.29 0.43 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 1.01 7.92 -51.93 -0.41 0.60 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.09 1.29 6.90 -51.93 -0.36 0.93 16 37 H 0.08 0.96 5.89 -51.93 -0.31 0.65 16 38 H 0.04 0.87 5.78 -51.93 -0.30 0.57 16 39 H 0.04 0.83 7.92 -51.93 -0.41 0.42 16 40 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 41 H 0.08 1.45 7.79 -51.93 -0.40 1.04 16 42 H 0.07 1.31 6.23 -51.93 -0.32 0.99 16 43 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 47 H 0.07 1.15 6.52 -51.93 -0.34 0.81 16 48 H 0.12 2.42 7.92 -51.93 -0.41 2.01 16 49 H 0.10 1.85 7.89 -51.93 -0.41 1.44 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -28.13 384.02 -7.92 -36.05 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -8.48 Total: 4.03 kcal Atomic # 6 Polarization: 5.01 SS G_CDS: -0.24 Total: 4.77 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: -0.13 Total: -43.90 kcal Atomic # 8 Polarization: -22.13 SS G_CDS: 0.16 Total: -21.97 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -28.13 -7.92 -36.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.227 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds