Wall clock time and date at job start Fri Apr 10 2020 22:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47818 * 2 1 4 4 C 1.53005 * 109.46572 * 120.00134 * 2 1 3 5 5 N 1.46502 * 109.46912 * 174.99964 * 4 2 1 6 6 C 1.46760 * 124.35108 * 89.99524 * 5 4 2 7 7 C 1.54483 * 105.47384 * 197.03648 * 6 5 4 8 8 H 1.08996 * 110.97119 * 92.74156 * 7 6 5 9 9 C 1.50699 * 110.97035 * 216.46721 * 7 6 5 10 10 O 1.21276 * 120.00003 * 25.02705 * 9 7 6 11 11 N 1.34775 * 119.99864 * 205.02104 * 9 7 6 12 12 C 1.46497 * 120.00062 * 355.57023 * 11 9 7 13 13 C 1.50707 * 109.47071 * 269.99496 * 12 11 9 14 14 H 1.07997 * 119.99804 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00083 * 180.02562 * 13 12 11 16 16 N 1.31518 * 120.00079 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00250 * 180.02562 * 15 13 12 18 18 H 1.48502 * 109.47105 * 89.99660 * 17 15 13 19 19 H 1.48493 * 109.47477 * 210.00084 * 17 15 13 20 20 H 1.48501 * 109.46917 * 330.00142 * 17 15 13 21 21 C 1.46505 * 120.00030 * 175.56382 * 11 9 7 22 22 C 1.53002 * 109.46940 * 60.08438 * 21 11 9 23 23 C 1.52991 * 109.47153 * 300.08729 * 21 11 9 24 24 C 1.54630 * 101.79800 * 334.60554 * 7 6 5 25 25 C 1.34427 * 124.34664 * 270.02025 * 5 4 2 26 26 O 1.21279 * 124.93933 * 359.60086 * 25 5 4 27 27 H 1.08999 * 109.46976 * 300.00554 * 1 2 3 28 28 H 1.09001 * 109.46646 * 60.00025 * 1 2 3 29 29 H 1.08990 * 109.47528 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46976 * 239.99446 * 2 1 3 31 31 H 1.09005 * 109.46944 * 59.99414 * 3 2 1 32 32 H 1.08997 * 109.47123 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46318 * 300.00087 * 3 2 1 34 34 H 1.08994 * 109.47240 * 54.99556 * 4 2 1 35 35 H 1.09005 * 109.46784 * 294.99342 * 4 2 1 36 36 H 1.09006 * 110.24461 * 78.04071 * 6 5 4 37 37 H 1.08993 * 110.24803 * 316.03568 * 6 5 4 38 38 H 1.09003 * 109.47581 * 29.99529 * 12 11 9 39 39 H 1.08999 * 109.47399 * 150.00066 * 12 11 9 40 40 H 0.96999 * 120.00019 * 180.02562 * 16 15 13 41 41 H 1.09000 * 109.47124 * 180.02562 * 21 11 9 42 42 H 1.09003 * 109.46906 * 293.65823 * 22 21 11 43 43 H 1.09000 * 109.46992 * 53.65061 * 22 21 11 44 44 H 1.08991 * 109.47301 * 173.65616 * 22 21 11 45 45 H 1.09000 * 109.47432 * 187.26116 * 23 21 11 46 46 H 1.09007 * 109.46892 * 307.25426 * 23 21 11 47 47 H 1.08998 * 109.47692 * 67.25827 * 23 21 11 48 48 H 1.09000 * 110.48756 * 143.46056 * 24 7 6 49 49 H 1.09006 * 110.48718 * 266.10206 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5000 -0.8265 1.1907 6 6 4.4249 0.1770 1.7305 7 6 5.7894 -0.1232 1.0714 8 1 5.9215 0.4645 0.1630 9 6 6.9202 0.1204 2.0372 10 8 6.7223 0.0537 3.2319 11 7 8.1515 0.4123 1.5734 12 6 8.4139 0.3975 0.1322 13 6 8.8592 -0.9811 -0.2832 14 1 8.9384 -1.7675 0.4527 15 6 9.1655 -1.2382 -1.6026 16 7 9.0695 -0.2804 -2.4987 17 14 9.7168 -2.9471 -2.1177 18 1 8.5306 -3.7576 -2.4936 19 1 10.6334 -2.8419 -3.2812 20 1 10.4246 -3.6004 -0.9874 21 6 9.2275 0.7445 2.5105 22 6 9.4609 -0.4342 3.4577 23 6 8.8338 1.9805 3.3217 24 6 5.6572 -1.6283 0.7423 25 6 4.1646 -1.8544 0.6351 26 8 3.6439 -2.8218 0.1215 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0275 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.1302 1.4423 0.0005 33 1 1.6768 1.9562 -0.8900 34 1 1.6052 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1370 36 1 4.4992 0.0775 2.8135 37 1 4.0903 1.1798 1.4652 38 1 7.5036 0.6626 -0.4057 39 1 9.1973 1.1182 -0.1020 40 1 9.2847 -0.4614 -3.4271 41 1 10.1426 0.9498 1.9549 42 1 8.5851 -0.5689 4.0925 43 1 9.6305 -1.3400 2.8756 44 1 10.3331 -0.2333 4.0796 45 1 9.6818 2.3044 3.9251 46 1 8.5430 2.7827 2.6434 47 1 7.9961 1.7350 3.9745 48 1 6.1472 -1.8563 -0.2043 49 1 6.0777 -2.2329 1.5460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000608814910.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:18 Heat of formation + Delta-G solvation = -98.395875 kcal Electronic energy + Delta-G solvation = -27757.355643 eV Core-core repulsion = 24104.346431 eV Total energy + Delta-G solvation = -3653.009213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.98074 -40.56208 -37.86883 -37.14418 -36.45483 -34.99100 -33.55323 -32.25030 -29.04580 -28.76479 -27.95748 -27.90866 -27.30801 -24.97801 -24.32829 -22.30932 -21.57309 -20.29762 -19.62505 -18.54058 -18.22938 -17.85868 -17.09072 -16.77232 -16.43119 -16.20586 -15.84172 -15.63365 -15.11732 -14.97603 -14.61150 -14.46652 -14.35981 -14.12284 -13.86141 -13.80563 -13.75070 -13.42706 -13.20119 -13.08048 -12.85849 -12.73754 -12.72991 -12.67223 -12.41190 -12.38770 -12.14055 -12.12764 -12.06184 -11.77955 -11.67915 -11.63213 -11.55232 -10.99640 -10.60098 -10.32333 -9.69095 -9.39765 -8.18628 -6.29896 1.39221 1.42952 1.44857 1.49590 1.70370 1.96272 2.30285 2.44242 3.12796 3.27394 3.53080 3.69975 3.86987 3.93069 3.96419 4.07314 4.15959 4.28564 4.33116 4.45910 4.47077 4.50187 4.59101 4.63621 4.75860 4.79835 4.83987 4.84761 4.90605 4.92148 5.01708 5.03288 5.04248 5.08126 5.12460 5.24734 5.25659 5.34706 5.37803 5.43337 5.48213 5.60921 5.71642 5.96609 6.00044 6.09826 6.62185 6.87499 7.06810 7.34128 7.45152 8.86422 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.011176 B = 0.005165 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2504.706684 B = 5419.504310 C = 6862.110537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.114 4.114 3 C -0.148 4.148 4 C 0.126 3.874 5 N -0.606 5.606 6 C 0.121 3.879 7 C -0.114 4.114 8 H 0.111 0.889 9 C 0.532 3.468 10 O -0.570 6.570 11 N -0.590 5.590 12 C 0.249 3.751 13 C -0.532 4.532 14 H 0.052 0.948 15 C 0.028 3.972 16 N -0.917 5.917 17 Si 0.938 3.062 18 H -0.281 1.281 19 H -0.282 1.282 20 H -0.271 1.271 21 C 0.137 3.863 22 C -0.155 4.155 23 C -0.152 4.152 24 C -0.126 4.126 25 C 0.519 3.481 26 O -0.576 6.576 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.043 0.957 31 H 0.075 0.925 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.071 0.929 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.035 0.965 39 H 0.022 0.978 40 H 0.266 0.734 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.035 0.965 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.098 0.902 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.380 6.486 8.573 14.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.133 4.133 3 C -0.205 4.205 4 C 0.006 3.994 5 N -0.338 5.338 6 C -0.001 4.001 7 C -0.135 4.135 8 H 0.129 0.871 9 C 0.320 3.680 10 O -0.452 6.452 11 N -0.320 5.320 12 C 0.128 3.872 13 C -0.571 4.571 14 H 0.071 0.929 15 C -0.172 4.172 16 N -0.557 5.557 17 Si 0.765 3.235 18 H -0.207 1.207 19 H -0.208 1.208 20 H -0.195 1.195 21 C 0.034 3.966 22 C -0.212 4.212 23 C -0.210 4.210 24 C -0.167 4.167 25 C 0.307 3.693 26 O -0.456 6.456 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.093 0.907 32 H 0.067 0.933 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.127 0.873 38 H 0.053 0.947 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.054 0.946 44 H 0.097 0.903 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.079 0.921 48 H 0.117 0.883 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -10.770 6.035 8.748 15.131 hybrid contribution 0.796 -1.212 -1.068 1.801 sum -9.974 4.823 7.680 13.481 Atomic orbital electron populations 1.21723 0.92707 1.02094 1.03067 1.21509 0.97424 0.97095 0.97301 1.21935 1.00839 0.94872 1.02870 1.21703 0.76569 1.01681 0.99495 1.48322 1.07186 1.21254 1.57046 1.22197 0.85543 0.93053 0.99318 1.22121 0.94231 0.97287 0.99896 0.87147 1.19967 0.83800 0.75934 0.88299 1.90542 1.83953 1.54065 1.16660 1.48306 1.09048 1.65857 1.08746 1.19181 0.96830 0.96050 0.75148 1.21618 1.45361 0.96796 0.93277 0.92946 1.25452 0.95518 0.99547 0.96691 1.69975 1.49433 1.33522 1.02748 0.85848 0.78300 0.81341 0.78020 1.20723 1.20772 1.19518 1.21098 0.89766 0.95420 0.90321 1.22082 1.02513 0.97296 0.99354 1.22067 1.02809 0.96014 1.00075 1.22072 0.93486 0.96084 1.05072 1.21003 0.90046 0.81859 0.76365 1.90650 1.75098 1.32776 1.47078 0.90677 0.91914 0.92874 0.93839 0.90652 0.93338 0.92262 0.91098 0.87311 0.89106 0.87319 0.94684 0.95980 0.92527 0.90066 0.91881 0.94595 0.90325 0.89992 0.92941 0.92071 0.88342 0.88525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 2 C -0.11 -2.35 3.13 -10.79 -0.03 -2.39 16 3 C -0.15 -2.68 8.58 71.98 0.62 -2.06 16 4 C 0.13 2.79 5.35 86.38 0.46 3.26 16 5 N -0.61 -17.05 2.71 -817.89 -2.21 -19.26 16 6 C 0.12 3.16 6.29 86.83 0.55 3.71 16 7 C -0.11 -3.72 2.83 -10.48 -0.03 -3.75 16 8 H 0.11 3.72 6.08 -2.39 -0.01 3.71 16 9 C 0.53 19.12 6.18 87.66 0.54 19.66 16 10 O -0.57 -21.20 12.07 -3.02 -0.04 -21.24 16 11 N -0.59 -22.24 2.41 -802.14 -1.93 -24.17 16 12 C 0.25 10.94 5.01 85.64 0.43 11.37 16 13 C -0.53 -26.14 9.17 25.60 0.23 -25.91 16 14 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 15 C 0.03 1.46 5.46 84.65 0.46 1.92 16 16 N -0.92 -49.18 13.29 21.45 0.28 -48.90 16 17 Si 0.94 41.96 29.54 68.60 2.03 43.99 16 18 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 19 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 20 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 21 C 0.14 4.54 3.28 44.99 0.15 4.69 16 22 C -0.15 -4.97 9.00 71.98 0.65 -4.32 16 23 C -0.15 -4.19 9.01 71.98 0.65 -3.54 16 24 C -0.13 -4.63 6.41 30.61 0.20 -4.43 16 25 C 0.52 18.82 8.02 87.91 0.71 19.52 16 26 O -0.58 -24.84 17.59 -3.03 -0.05 -24.90 16 27 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 32 H 0.05 1.01 5.65 -2.39 -0.01 1.00 16 33 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 35 H 0.11 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.09 2.43 6.90 -2.38 -0.02 2.41 16 37 H 0.11 2.28 5.89 -2.39 -0.01 2.27 16 38 H 0.04 1.59 5.78 -2.39 -0.01 1.57 16 39 H 0.02 1.04 7.92 -2.39 -0.02 1.02 16 40 H 0.27 13.72 8.31 -92.71 -0.77 12.95 16 41 H 0.08 2.73 7.79 -2.39 -0.02 2.71 16 42 H 0.06 2.16 6.23 -2.39 -0.01 2.15 16 43 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 45 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.06 1.83 6.52 -2.39 -0.02 1.82 16 48 H 0.10 4.08 7.92 -2.39 -0.02 4.06 16 49 H 0.10 3.60 7.89 -2.38 -0.02 3.58 16 Total: -1.00 -60.79 384.02 5.23 -55.56 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: 0.92 Total: 22.69 kcal Atomic # 6 Polarization: 9.99 SS G_CDS: 6.24 Total: 16.23 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -3.86 Total: -92.33 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.09 Total: -46.14 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Total: -60.79 5.23 -55.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000608814910.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.833 kcal (2) G-P(sol) polarization free energy of solvation -60.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds