Wall clock time and date at job start Fri Apr 10 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 C 1.52996 * 109.47279 * 239.99949 * 2 1 3 5 5 C 1.50703 * 109.47515 * 119.99814 * 2 1 3 6 6 O 1.21286 * 119.99415 * 9.85271 * 5 2 1 7 7 N 1.34775 * 120.00512 * 189.85167 * 5 2 1 8 8 C 1.47428 * 125.64593 * 355.87971 * 7 5 2 9 9 C 1.55387 * 104.87427 * 204.17065 * 8 7 5 10 10 C 1.55155 * 101.36545 * 323.01649 * 9 8 7 11 11 C 1.47018 * 125.65218 * 175.92576 * 7 5 2 12 12 H 1.09004 * 109.87650 * 298.32064 * 11 7 5 13 13 C 1.50702 * 109.88560 * 59.48246 * 11 7 5 14 14 O 1.21290 * 119.99577 * 359.26524 * 13 11 7 15 15 N 1.34769 * 120.00313 * 179.26261 * 13 11 7 16 16 C 1.46500 * 120.00203 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47310 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47278 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47131 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00205 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00032 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00113 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00155 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46970 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47083 * 120.00131 * 23 21 19 26 26 H 1.48498 * 109.47250 * 240.00295 * 23 21 19 27 27 H 1.09001 * 109.46981 * 299.99863 * 1 2 3 28 28 H 1.08992 * 109.47336 * 60.00100 * 1 2 3 29 29 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46873 * 300.00406 * 3 2 1 32 32 H 1.08995 * 109.46638 * 60.00001 * 3 2 1 33 33 H 1.09002 * 109.47436 * 307.32456 * 4 2 1 34 34 H 1.08999 * 109.47023 * 67.32469 * 4 2 1 35 35 H 1.09004 * 109.47696 * 187.32730 * 4 2 1 36 36 H 1.08999 * 110.36578 * 323.00379 * 8 7 5 37 37 H 1.09001 * 110.36562 * 85.21323 * 8 7 5 38 38 H 1.09002 * 111.18877 * 204.97953 * 9 8 7 39 39 H 1.09004 * 111.02406 * 80.98142 * 9 8 7 40 40 H 1.08999 * 110.72086 * 277.04747 * 10 9 8 41 41 H 1.08999 * 110.72137 * 153.94517 * 10 9 8 42 42 H 0.97004 * 120.00134 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.47340 * 300.00440 * 16 15 13 44 44 H 1.08995 * 109.46847 * 60.00612 * 16 15 13 45 45 H 1.09005 * 109.46781 * 300.00170 * 17 16 15 46 46 H 1.09001 * 109.46869 * 59.99938 * 17 16 15 47 47 H 1.09005 * 109.47022 * 299.99616 * 18 17 16 48 48 H 1.09001 * 109.47293 * 59.99465 * 18 17 16 49 49 H 0.96996 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2588 -1.3243 1.9345 7 7 3.3412 -0.6634 1.5486 8 6 4.3995 -0.0301 0.7409 9 6 5.7090 -0.7529 1.1619 10 6 5.4673 -0.9641 2.6799 11 6 3.9502 -1.2362 2.7579 12 1 3.5331 -0.7587 3.6446 13 6 3.6975 -2.7211 2.8051 14 8 3.0580 -3.2557 1.9240 15 7 4.1821 -3.4551 3.8263 16 6 3.9369 -4.8987 3.8718 17 6 4.5893 -5.4876 5.1242 18 6 4.3338 -6.9953 5.1714 19 6 4.9759 -7.5752 6.4053 20 1 5.5129 -6.9327 7.0874 21 6 4.8778 -8.9260 6.6635 22 7 4.2242 -9.7086 5.8326 23 14 5.6743 -9.6450 8.1926 24 1 6.3445 -8.5626 8.9571 25 1 4.6335 -10.2786 9.0415 26 1 6.6774 -10.6652 7.7951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5737 -1.7041 -1.3172 34 1 1.7876 -0.1374 -2.1343 35 1 3.1221 -0.8362 -1.1861 36 1 4.2079 -0.1814 -0.3213 37 1 4.4629 1.0345 0.9664 38 1 6.5806 -0.1215 0.9892 39 1 5.8119 -1.7076 0.6461 40 1 5.7274 -0.0663 3.2404 41 1 6.0321 -1.8220 3.0446 42 1 4.6933 -3.0275 4.5312 43 1 2.8632 -5.0841 3.9005 44 1 4.3631 -5.3677 2.9850 45 1 5.6631 -5.3021 5.0959 46 1 4.1628 -5.0184 6.0108 47 1 3.2601 -7.1811 5.1996 48 1 4.7605 -7.4641 4.2848 49 1 4.1555 -10.6589 6.0141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:20 Heat of formation + Delta-G solvation = -84.416272 kcal Electronic energy + Delta-G solvation = -26613.769714 eV Core-core repulsion = 22961.366703 eV Total energy + Delta-G solvation = -3652.403012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.04062 -39.13415 -37.34799 -35.84412 -35.25108 -33.31690 -31.87206 -31.20752 -29.77641 -27.68682 -27.36927 -26.56541 -24.96927 -23.34192 -22.02899 -21.78962 -20.61824 -19.91249 -18.96015 -17.42027 -16.84047 -16.37551 -16.05322 -15.53534 -15.14059 -15.06841 -14.86856 -14.44562 -14.14017 -14.02661 -13.93538 -13.73164 -13.41365 -13.23603 -12.67565 -12.47296 -12.42611 -12.27132 -12.03996 -11.92543 -11.83920 -11.78953 -11.70136 -11.48768 -11.26776 -11.17333 -10.90497 -10.83298 -10.70138 -10.55778 -9.86043 -9.84155 -9.66385 -9.42100 -9.10463 -8.70971 -8.65678 -8.36198 -6.00466 -4.03565 2.56238 2.76330 2.86468 3.30666 3.37930 3.41299 3.50848 4.07625 4.13829 4.34549 4.45233 4.51690 4.55370 4.64915 4.81127 4.84956 4.99129 5.01244 5.21691 5.26661 5.31557 5.35241 5.36847 5.42746 5.46960 5.51736 5.55723 5.63376 5.69743 5.75183 5.76481 5.81705 5.82811 5.99145 6.02945 6.14390 6.20678 6.55371 6.63942 6.88148 7.03919 7.37539 7.65701 7.78043 7.78490 7.98639 8.17570 8.39310 8.51798 9.03457 9.60554 11.10921 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.002483 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.981516 B =11272.390763 C =11855.090701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.155 4.155 4 C -0.144 4.144 5 C 0.544 3.456 6 O -0.516 6.516 7 N -0.603 5.603 8 C 0.091 3.909 9 C -0.135 4.135 10 C -0.125 4.125 11 C 0.117 3.883 12 H 0.098 0.902 13 C 0.501 3.499 14 O -0.520 6.520 15 N -0.728 5.728 16 C 0.119 3.881 17 C -0.119 4.119 18 C 0.023 3.977 19 C -0.521 4.521 20 H 0.056 0.944 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.064 0.936 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.396 0.604 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.053 0.947 46 H 0.054 0.946 47 H 0.019 0.981 48 H 0.018 0.982 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.755 27.199 -13.409 30.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.212 4.212 4 C -0.202 4.202 5 C 0.332 3.668 6 O -0.389 6.389 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.173 4.173 10 C -0.163 4.163 11 C 0.010 3.990 12 H 0.116 0.884 13 C 0.284 3.716 14 O -0.395 6.395 15 N -0.380 5.380 16 C -0.003 4.003 17 C -0.157 4.157 18 C -0.014 4.014 19 C -0.559 4.559 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.229 0.771 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.676 26.270 -13.730 29.649 hybrid contribution 0.672 -0.409 1.264 1.488 sum 1.347 25.861 -12.466 28.741 Atomic orbital electron populations 1.21669 0.91879 1.03202 1.01747 1.20724 0.97919 0.96057 0.93597 1.22184 1.02339 0.93949 1.02688 1.21976 1.01633 1.00999 0.95551 1.20212 0.80115 0.80023 0.86467 1.90736 1.54633 1.41248 1.52271 1.48158 1.06644 1.56669 1.22345 1.22817 0.86786 0.96831 0.96671 1.22927 0.97109 1.01810 0.95469 1.22688 0.92206 1.03733 0.97712 1.21523 0.94846 0.92181 0.90493 0.88385 1.20682 0.79630 0.88860 0.82424 1.90710 1.38283 1.72650 1.37821 1.46146 1.56330 1.09899 1.25603 1.21601 1.00983 0.77769 0.99986 1.21877 0.99157 1.00306 0.94401 1.19034 0.97440 0.87637 0.97330 1.21240 1.33996 0.92998 1.07684 0.92596 1.25042 0.95446 0.97323 0.96735 1.69981 1.41925 1.04852 1.36536 0.86525 0.79145 0.79110 0.83138 1.19762 1.20999 1.21007 0.92224 0.92037 0.91535 0.91018 0.91515 0.92238 0.91637 0.91443 0.91687 0.89514 0.90673 0.89237 0.90196 0.89350 0.89162 0.77067 0.91919 0.91996 0.92790 0.92753 0.96284 0.96320 0.92985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.82 37.16 0.29 -0.99 16 2 C -0.08 -0.79 0.75 -155.66 -0.12 -0.90 16 3 C -0.15 -1.03 8.15 37.16 0.30 -0.72 16 4 C -0.14 -1.26 8.32 37.16 0.31 -0.95 16 5 C 0.54 7.54 5.82 -10.98 -0.06 7.47 16 6 O -0.52 -9.68 14.80 -13.51 -0.20 -9.88 16 7 N -0.60 -6.88 2.85 -164.02 -0.47 -7.35 16 8 C 0.09 0.64 4.86 -2.27 -0.01 0.63 16 9 C -0.14 -0.88 7.12 -24.32 -0.17 -1.06 16 10 C -0.13 -0.92 6.41 -24.90 -0.16 -1.08 16 11 C 0.12 1.35 3.32 -68.11 -0.23 1.12 16 12 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 13 C 0.50 8.03 6.71 -10.99 -0.07 7.96 16 14 O -0.52 -10.76 14.69 -13.51 -0.20 -10.96 16 15 N -0.73 -10.99 5.23 -60.29 -0.32 -11.31 16 16 C 0.12 2.23 5.67 -4.04 -0.02 2.21 16 17 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 18 C 0.02 0.60 4.97 -27.89 -0.14 0.47 16 19 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 22 N -0.89 -27.24 13.29 55.43 0.74 -26.51 16 23 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.80 7.99 -51.93 -0.41 0.38 16 30 H 0.07 0.38 4.13 -51.93 -0.21 0.17 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.53 5.09 -51.93 -0.26 0.27 16 36 H 0.09 0.56 4.58 -51.93 -0.24 0.32 16 37 H 0.08 0.37 6.90 -51.93 -0.36 0.01 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.09 0.68 7.42 -51.93 -0.39 0.30 16 42 H 0.40 4.68 8.28 -40.82 -0.34 4.34 16 43 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 44 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -37.16 382.18 -8.86 -46.02 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -8.52 Total: -0.53 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.64 Total: -1.93 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: -0.05 Total: -45.16 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.40 Total: -20.84 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.16 -8.86 -46.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.394 kcal (2) G-P(sol) polarization free energy of solvation -37.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds