Wall clock time and date at job start Fri Apr 10 2020 22:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47271 * 2 1 4 4 C 1.52996 * 109.47279 * 239.99949 * 2 1 3 5 5 C 1.50703 * 109.47515 * 119.99814 * 2 1 3 6 6 O 1.21286 * 119.99415 * 9.85271 * 5 2 1 7 7 N 1.34775 * 120.00512 * 189.85167 * 5 2 1 8 8 C 1.47428 * 125.64593 * 355.87971 * 7 5 2 9 9 C 1.55387 * 104.87427 * 204.17065 * 8 7 5 10 10 C 1.55155 * 101.36545 * 323.01649 * 9 8 7 11 11 C 1.47018 * 125.65218 * 175.92576 * 7 5 2 12 12 H 1.09004 * 109.87650 * 298.32064 * 11 7 5 13 13 C 1.50702 * 109.88560 * 59.48246 * 11 7 5 14 14 O 1.21290 * 119.99577 * 359.26524 * 13 11 7 15 15 N 1.34769 * 120.00313 * 179.26261 * 13 11 7 16 16 C 1.46500 * 120.00203 * 180.02562 * 15 13 11 17 17 C 1.53004 * 109.47310 * 180.02562 * 16 15 13 18 18 C 1.52995 * 109.47278 * 180.02562 * 17 16 15 19 19 C 1.50699 * 109.47131 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00205 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00032 * 179.97438 * 19 18 17 22 22 N 1.31522 * 120.00113 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00155 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46970 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47083 * 120.00131 * 23 21 19 26 26 H 1.48498 * 109.47250 * 240.00295 * 23 21 19 27 27 H 1.09001 * 109.46981 * 299.99863 * 1 2 3 28 28 H 1.08992 * 109.47336 * 60.00100 * 1 2 3 29 29 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47351 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46873 * 300.00406 * 3 2 1 32 32 H 1.08995 * 109.46638 * 60.00001 * 3 2 1 33 33 H 1.09002 * 109.47436 * 307.32456 * 4 2 1 34 34 H 1.08999 * 109.47023 * 67.32469 * 4 2 1 35 35 H 1.09004 * 109.47696 * 187.32730 * 4 2 1 36 36 H 1.08999 * 110.36578 * 323.00379 * 8 7 5 37 37 H 1.09001 * 110.36562 * 85.21323 * 8 7 5 38 38 H 1.09002 * 111.18877 * 204.97953 * 9 8 7 39 39 H 1.09004 * 111.02406 * 80.98142 * 9 8 7 40 40 H 1.08999 * 110.72086 * 277.04747 * 10 9 8 41 41 H 1.08999 * 110.72137 * 153.94517 * 10 9 8 42 42 H 0.97004 * 120.00134 * 0.02562 * 15 13 11 43 43 H 1.08998 * 109.47340 * 300.00440 * 16 15 13 44 44 H 1.08995 * 109.46847 * 60.00612 * 16 15 13 45 45 H 1.09005 * 109.46781 * 300.00170 * 17 16 15 46 46 H 1.09001 * 109.46869 * 59.99938 * 17 16 15 47 47 H 1.09005 * 109.47022 * 299.99616 * 18 17 16 48 48 H 1.09001 * 109.47293 * 59.99465 * 18 17 16 49 49 H 0.96996 * 120.00192 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7104 1.2305 6 8 1.2588 -1.3243 1.9345 7 7 3.3412 -0.6634 1.5486 8 6 4.3995 -0.0301 0.7409 9 6 5.7090 -0.7529 1.1619 10 6 5.4673 -0.9641 2.6799 11 6 3.9502 -1.2362 2.7579 12 1 3.5331 -0.7587 3.6446 13 6 3.6975 -2.7211 2.8051 14 8 3.0580 -3.2557 1.9240 15 7 4.1821 -3.4551 3.8263 16 6 3.9369 -4.8987 3.8718 17 6 4.5893 -5.4876 5.1242 18 6 4.3338 -6.9953 5.1714 19 6 4.9759 -7.5752 6.4053 20 1 5.5129 -6.9327 7.0874 21 6 4.8778 -8.9260 6.6635 22 7 4.2242 -9.7086 5.8326 23 14 5.6743 -9.6450 8.1926 24 1 6.3445 -8.5626 8.9571 25 1 4.6335 -10.2786 9.0415 26 1 6.6774 -10.6652 7.7951 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.5737 -1.7041 -1.3172 34 1 1.7876 -0.1374 -2.1343 35 1 3.1221 -0.8362 -1.1861 36 1 4.2079 -0.1814 -0.3213 37 1 4.4629 1.0345 0.9664 38 1 6.5806 -0.1215 0.9892 39 1 5.8119 -1.7076 0.6461 40 1 5.7274 -0.0663 3.2404 41 1 6.0321 -1.8220 3.0446 42 1 4.6933 -3.0275 4.5312 43 1 2.8632 -5.0841 3.9005 44 1 4.3631 -5.3677 2.9850 45 1 5.6631 -5.3021 5.0959 46 1 4.1628 -5.0184 6.0108 47 1 3.2601 -7.1811 5.1996 48 1 4.7605 -7.4641 4.2848 49 1 4.1555 -10.6589 6.0141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141595.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:20 Heat of formation + Delta-G solvation = -109.659883 kcal Electronic energy + Delta-G solvation = -26614.864359 eV Core-core repulsion = 22961.366703 eV Total energy + Delta-G solvation = -3653.497657 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.99421 -40.33330 -38.28703 -37.00799 -36.62583 -35.23905 -33.26860 -32.39697 -30.76524 -28.55252 -28.30293 -27.92219 -25.85531 -25.07657 -23.00499 -22.59008 -22.34830 -21.01213 -19.93932 -18.65635 -18.34854 -17.74114 -17.18674 -16.66285 -16.56471 -16.38019 -16.17145 -15.79195 -15.27072 -14.87455 -14.71041 -14.66466 -14.47456 -14.28829 -14.07994 -13.77744 -13.56593 -13.52277 -13.20864 -12.96596 -12.85026 -12.79612 -12.60577 -12.58913 -12.37618 -12.35438 -12.30708 -11.96859 -11.90672 -11.72152 -11.58749 -11.45584 -11.24937 -10.88337 -10.66583 -10.59226 -10.13157 -9.67048 -8.21907 -6.34159 1.40049 1.40920 1.54141 1.57220 1.61492 1.89970 2.28434 2.41499 3.11758 3.35605 3.54371 3.61461 3.74955 3.84148 3.91712 4.03690 4.13246 4.14113 4.20411 4.28627 4.45708 4.48623 4.55781 4.66265 4.72536 4.78438 4.85077 4.86267 4.88102 4.92027 4.92943 4.95397 5.04199 5.05746 5.11979 5.18456 5.21185 5.29545 5.35018 5.39013 5.40593 5.49247 5.65423 5.80486 6.18534 6.47029 6.57970 6.83565 7.17826 7.29478 7.35825 8.90772 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026359 B = 0.002483 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.981516 B =11272.390763 C =11855.090701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.147 4.147 4 C -0.141 4.141 5 C 0.529 3.471 6 O -0.582 6.582 7 N -0.604 5.604 8 C 0.083 3.917 9 C -0.131 4.131 10 C -0.116 4.116 11 C 0.115 3.885 12 H 0.107 0.893 13 C 0.493 3.507 14 O -0.574 6.574 15 N -0.715 5.715 16 C 0.134 3.866 17 C -0.098 4.098 18 C 0.023 3.977 19 C -0.539 4.539 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.256 1.256 25 H -0.281 1.281 26 H -0.278 1.278 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.112 0.888 38 H 0.128 0.872 39 H 0.055 0.945 40 H 0.126 0.874 41 H 0.088 0.912 42 H 0.416 0.584 43 H 0.033 0.967 44 H 0.047 0.953 45 H 0.075 0.925 46 H 0.066 0.934 47 H -0.014 1.014 48 H -0.008 1.008 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.637 30.660 -13.041 33.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.204 4.204 4 C -0.198 4.198 5 C 0.319 3.681 6 O -0.461 6.461 7 N -0.338 5.338 8 C -0.037 4.037 9 C -0.169 4.169 10 C -0.154 4.154 11 C 0.007 3.993 12 H 0.124 0.876 13 C 0.279 3.721 14 O -0.453 6.453 15 N -0.368 5.368 16 C 0.010 3.990 17 C -0.136 4.136 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.087 0.913 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.180 1.180 25 H -0.207 1.207 26 H -0.204 1.204 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.118 0.882 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.074 0.926 40 H 0.145 0.855 41 H 0.106 0.894 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.093 0.907 46 H 0.085 0.915 47 H 0.004 0.996 48 H 0.010 0.990 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.629 29.796 -13.356 32.854 hybrid contribution -0.256 -1.511 1.105 1.889 sum 3.373 28.285 -12.251 31.008 Atomic orbital electron populations 1.21668 0.92640 1.01343 1.02719 1.20816 0.97434 0.98006 0.91969 1.22171 1.03439 0.91101 1.03658 1.21978 1.01740 0.99773 0.96310 1.21093 0.80573 0.79387 0.87002 1.90694 1.56566 1.44195 1.54616 1.48369 1.06837 1.55808 1.22764 1.23203 0.85497 0.98475 0.96571 1.22977 0.98169 1.01371 0.94396 1.22789 0.88290 1.05367 0.98942 1.21738 0.98152 0.88155 0.91261 0.87561 1.21705 0.78127 0.91000 0.81277 1.90688 1.40546 1.74155 1.39883 1.45914 1.56369 1.08218 1.26302 1.21143 0.98880 0.80185 0.98833 1.21580 1.00568 0.96164 0.95288 1.18950 0.94975 0.91662 0.95880 1.21697 1.34000 0.93652 1.08338 0.91267 1.26091 0.95969 0.97939 1.00376 1.70136 1.43474 1.05309 1.38879 0.85309 0.78087 0.78489 0.78604 1.17952 1.20683 1.20401 0.93185 0.88964 0.94853 0.89207 0.89154 0.92669 0.94818 0.88247 0.90982 0.88811 0.87070 0.85425 0.92647 0.85538 0.89352 0.74733 0.94810 0.93448 0.90657 0.91534 0.99578 0.98991 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.82 71.98 0.56 -2.05 16 2 C -0.08 -1.51 0.75 -52.93 -0.04 -1.55 16 3 C -0.15 -1.49 8.15 71.98 0.59 -0.91 16 4 C -0.14 -2.35 8.32 71.98 0.60 -1.75 16 5 C 0.53 15.06 5.82 87.66 0.51 15.57 16 6 O -0.58 -23.53 14.80 15.17 0.22 -23.31 16 7 N -0.60 -13.18 2.85 -791.21 -2.26 -15.44 16 8 C 0.08 0.89 4.86 87.02 0.42 1.32 16 9 C -0.13 -1.25 7.12 32.15 0.23 -1.03 16 10 C -0.12 -1.30 6.41 31.78 0.20 -1.09 16 11 C 0.11 2.50 3.32 44.60 0.15 2.65 16 12 H 0.11 2.16 8.14 -2.38 -0.02 2.14 16 13 C 0.49 16.24 6.71 87.66 0.59 16.83 16 14 O -0.57 -25.35 14.69 15.16 0.22 -25.13 16 15 N -0.71 -21.74 5.23 -463.06 -2.42 -24.16 16 16 C 0.13 5.24 5.67 86.38 0.49 5.73 16 17 C -0.10 -3.97 5.27 30.59 0.16 -3.81 16 18 C 0.02 1.25 4.97 29.85 0.15 1.40 16 19 C -0.54 -30.73 9.11 25.60 0.23 -30.50 16 20 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 21 C -0.01 -0.37 5.46 84.65 0.46 0.09 16 22 N -0.94 -58.73 13.29 21.45 0.28 -58.44 16 23 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 24 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 25 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.03 0.88 7.99 -2.39 -0.02 0.86 16 30 H 0.09 0.57 4.13 -2.39 -0.01 0.56 16 31 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16 33 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.08 5.09 -2.39 -0.01 1.06 16 36 H 0.09 0.90 4.58 -2.39 -0.01 0.89 16 37 H 0.11 0.48 6.90 -2.39 -0.02 0.47 16 38 H 0.13 0.31 8.14 -2.39 -0.02 0.30 16 39 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 41 H 0.09 1.07 7.42 -2.39 -0.02 1.05 16 42 H 0.42 9.23 8.28 -92.71 -0.77 8.46 16 43 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 46 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 47 H -0.01 -0.85 8.14 -2.38 -0.02 -0.87 16 48 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 49 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -88.58 382.18 3.55 -85.03 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.16 Total: 14.06 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: 5.31 Total: 0.90 kcal Atomic # 7 Polarization: -93.65 SS G_CDS: -4.39 Total: -98.04 kcal Atomic # 8 Polarization: -48.88 SS G_CDS: 0.45 Total: -48.44 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -88.58 3.55 -85.03 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141595.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.629 kcal (2) G-P(sol) polarization free energy of solvation -88.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds