Wall clock time and date at job start Fri Apr 10 2020 22:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.53002 * 109.46639 * 240.00047 * 2 1 3 5 5 C 1.50698 * 109.47145 * 120.00217 * 2 1 3 6 6 O 1.21283 * 120.00429 * 350.35595 * 5 2 1 7 7 N 1.34777 * 120.00022 * 170.62661 * 5 2 1 8 8 C 1.47432 * 125.64643 * 3.70295 * 7 5 2 9 9 C 1.55129 * 104.72301 * 155.81461 * 8 7 5 10 10 C 1.55163 * 101.48453 * 37.29534 * 9 8 7 11 11 C 1.47023 * 125.65079 * 184.00794 * 7 5 2 12 12 H 1.08997 * 109.88083 * 61.60671 * 11 7 5 13 13 C 1.50698 * 109.88190 * 300.59707 * 11 7 5 14 14 O 1.21280 * 120.00236 * 359.97438 * 13 11 7 15 15 N 1.34770 * 119.99839 * 180.02562 * 13 11 7 16 16 C 1.46506 * 119.99901 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47166 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47438 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47364 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99542 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99844 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46698 * 90.00141 * 23 21 19 25 25 H 1.48495 * 109.46898 * 210.00282 * 23 21 19 26 26 H 1.48501 * 109.46938 * 330.00364 * 23 21 19 27 27 H 1.09006 * 109.47089 * 299.99524 * 1 2 3 28 28 H 1.08995 * 109.47523 * 59.99498 * 1 2 3 29 29 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46431 * 186.04925 * 3 2 1 31 31 H 1.08996 * 109.47337 * 306.04997 * 3 2 1 32 32 H 1.09003 * 109.46429 * 66.05323 * 3 2 1 33 33 H 1.08992 * 109.47653 * 299.99937 * 4 2 1 34 34 H 1.09000 * 109.47066 * 60.00391 * 4 2 1 35 35 H 1.09005 * 109.46542 * 179.97438 * 4 2 1 36 36 H 1.08999 * 110.36630 * 274.74682 * 8 7 5 37 37 H 1.09007 * 110.36232 * 37.06657 * 8 7 5 38 38 H 1.09003 * 111.19027 * 279.19342 * 9 8 7 39 39 H 1.08996 * 110.93642 * 155.29057 * 9 8 7 40 40 H 1.08996 * 110.71598 * 205.97161 * 10 9 8 41 41 H 1.08992 * 110.86950 * 82.76512 * 10 9 8 42 42 H 0.97002 * 120.00277 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.47057 * 299.99874 * 16 15 13 44 44 H 1.08995 * 109.47043 * 60.00096 * 16 15 13 45 45 H 1.08994 * 109.46980 * 300.00391 * 17 16 15 46 46 H 1.09009 * 109.46995 * 60.00161 * 17 16 15 47 47 H 1.09000 * 109.46941 * 300.00674 * 18 17 16 48 48 H 1.09002 * 109.46581 * 59.99848 * 18 17 16 49 49 H 0.96997 * 119.99396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2583 -1.0166 2.1125 7 7 3.3428 -1.0008 1.3531 8 6 4.4010 -0.6156 0.4016 9 6 5.7041 -0.6078 1.2431 10 6 5.4711 -1.8189 2.1847 11 6 3.9528 -1.7596 2.4548 12 1 3.5415 -2.7686 2.4823 13 6 3.6889 -1.0628 3.7647 14 8 3.0531 -0.0302 3.7851 15 7 4.1602 -1.5867 4.9135 16 6 3.9032 -0.9097 6.1871 17 6 4.5418 -1.7066 7.3264 18 6 4.2740 -0.9993 8.6563 19 6 4.9035 -1.7840 9.7784 20 1 5.4413 -2.6957 9.5642 21 6 4.7938 -1.3373 11.0781 22 7 4.1393 -0.2267 11.3388 23 14 5.5736 -2.3103 12.4691 24 1 6.9640 -1.8360 12.6860 25 1 4.7847 -2.1159 13.7120 26 1 5.5920 -3.7523 12.1148 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1246 1.4444 -0.1083 31 1 1.5909 1.9867 -0.8308 32 1 1.7678 1.9240 0.9393 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 4.4711 -1.3465 -0.4040 37 1 4.2047 0.3777 -0.0023 38 1 5.8001 0.3168 1.8123 39 1 6.5773 -0.7671 0.6104 40 1 6.0325 -1.7004 3.1114 41 1 5.7386 -2.7525 1.6899 42 1 4.6691 -2.4124 4.8973 43 1 4.3319 0.0921 6.1591 44 1 2.8279 -0.8402 6.3511 45 1 4.1127 -2.7082 7.3542 46 1 5.6173 -1.7765 7.1626 47 1 4.7033 0.0022 8.6281 48 1 3.1986 -0.9291 8.8203 49 1 4.0619 0.0873 12.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609141596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:23 Heat of formation + Delta-G solvation = -84.612264 kcal Electronic energy + Delta-G solvation = -26613.445313 eV Core-core repulsion = 22961.033802 eV Total energy + Delta-G solvation = -3652.411511 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.03997 -39.13343 -37.35862 -35.84446 -35.24961 -33.31399 -31.86591 -31.21106 -29.78081 -27.68487 -27.37276 -26.56599 -24.96966 -23.33967 -22.02379 -21.78283 -20.61770 -19.91367 -18.96207 -17.41494 -16.84713 -16.37363 -16.04853 -15.53480 -15.14195 -15.06947 -14.87113 -14.45028 -14.15083 -14.03396 -13.93873 -13.71747 -13.41237 -13.21288 -12.67593 -12.47634 -12.41827 -12.26135 -12.04382 -11.94458 -11.83792 -11.79460 -11.71337 -11.48061 -11.25697 -11.17586 -10.88786 -10.83527 -10.69704 -10.58183 -9.85867 -9.83679 -9.66441 -9.41677 -9.11687 -8.70779 -8.65611 -8.35740 -6.00209 -4.03371 2.56242 2.76477 2.86624 3.31549 3.37783 3.40579 3.51018 4.07433 4.14724 4.34117 4.45348 4.51157 4.56689 4.64388 4.81237 4.85146 4.99074 5.00177 5.21856 5.26225 5.30881 5.35423 5.36824 5.43233 5.48881 5.52016 5.56915 5.62181 5.68894 5.75463 5.76782 5.81953 5.82959 5.99357 6.03126 6.14858 6.20798 6.55508 6.64091 6.88283 7.04032 7.37634 7.65622 7.78223 7.78671 7.98816 8.17540 8.39473 8.51943 9.03416 9.60668 11.11153 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002484 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.195235 B =11269.203888 C =11853.143288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.144 4.144 4 C -0.154 4.154 5 C 0.543 3.457 6 O -0.516 6.516 7 N -0.603 5.603 8 C 0.091 3.909 9 C -0.135 4.135 10 C -0.125 4.125 11 C 0.117 3.883 12 H 0.098 0.902 13 C 0.501 3.499 14 O -0.520 6.520 15 N -0.728 5.728 16 C 0.119 3.881 17 C -0.119 4.119 18 C 0.024 3.976 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.893 3.107 24 H -0.281 1.281 25 H -0.286 1.286 26 H -0.274 1.274 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.075 0.925 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.396 0.604 43 H 0.062 0.938 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.018 0.982 48 H 0.019 0.981 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.958 -1.861 -30.265 30.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.083 4.083 3 C -0.201 4.201 4 C -0.212 4.212 5 C 0.332 3.668 6 O -0.389 6.389 7 N -0.338 5.338 8 C -0.031 4.031 9 C -0.173 4.173 10 C -0.163 4.163 11 C 0.009 3.991 12 H 0.116 0.884 13 C 0.284 3.716 14 O -0.395 6.395 15 N -0.380 5.380 16 C -0.003 4.003 17 C -0.157 4.157 18 C -0.014 4.014 19 C -0.560 4.560 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.721 3.279 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.229 0.771 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.037 0.963 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.874 -1.117 -29.619 29.653 hybrid contribution 0.675 -0.907 0.979 1.495 sum 1.549 -2.024 -28.640 28.753 Atomic orbital electron populations 1.21668 0.91862 1.02680 1.02280 1.20726 0.97922 0.96474 0.93179 1.21969 1.01303 0.93684 1.03152 1.22172 1.02286 1.00513 0.96180 1.20216 0.80123 0.78575 0.87914 1.90736 1.54662 1.52222 1.41311 1.48162 1.06532 1.56361 1.22741 1.22792 0.86800 1.01193 0.92315 1.22882 0.97184 0.99080 0.98170 1.22684 0.92175 0.99784 1.01646 1.21519 0.94831 0.96064 0.86648 0.88444 1.20671 0.79616 0.85846 0.85421 1.90704 1.38356 1.23619 1.86804 1.46147 1.56641 1.28153 1.07042 1.21601 1.00937 0.96436 0.81359 1.21877 0.99237 0.99071 0.95562 1.19029 0.97406 0.95734 0.89232 1.21202 1.34272 1.08867 0.91663 0.92649 1.25039 0.95409 0.95117 0.98952 1.69972 1.41713 1.21666 1.19943 0.86577 0.79222 0.80370 0.81722 1.20667 1.21203 1.19892 0.91539 0.92036 0.92209 0.91721 0.91417 0.91627 0.92235 0.91510 0.91055 0.90693 0.89487 0.90161 0.89299 0.89168 0.89333 0.77070 0.91991 0.91923 0.92754 0.92792 0.96333 0.96283 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 7.82 37.16 0.29 -0.99 16 2 C -0.08 -0.78 0.75 -155.66 -0.12 -0.90 16 3 C -0.14 -1.25 8.30 37.16 0.31 -0.95 16 4 C -0.15 -1.03 8.16 37.16 0.30 -0.72 16 5 C 0.54 7.53 5.82 -10.99 -0.06 7.47 16 6 O -0.52 -9.69 14.81 -13.37 -0.20 -9.88 16 7 N -0.60 -6.88 2.85 -164.18 -0.47 -7.35 16 8 C 0.09 0.64 4.91 -2.41 -0.01 0.63 16 9 C -0.14 -0.89 7.10 -24.46 -0.17 -1.06 16 10 C -0.12 -0.91 6.45 -24.89 -0.16 -1.07 16 11 C 0.12 1.34 3.31 -68.10 -0.23 1.12 16 12 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 13 C 0.50 8.04 6.69 -10.99 -0.07 7.97 16 14 O -0.52 -10.76 14.71 -13.37 -0.20 -10.96 16 15 N -0.73 -11.01 5.25 -60.29 -0.32 -11.33 16 16 C 0.12 2.23 5.67 -4.04 -0.02 2.21 16 17 C -0.12 -2.41 5.27 -26.73 -0.14 -2.55 16 18 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 19 C -0.52 -14.79 9.11 -34.44 -0.31 -15.10 16 20 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -27.26 13.29 55.43 0.74 -26.52 16 23 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 27 H 0.07 0.80 7.99 -51.93 -0.42 0.38 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.48 5.10 -51.93 -0.26 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.38 4.16 -51.93 -0.22 0.17 16 36 H 0.08 0.37 6.91 -51.93 -0.36 0.01 16 37 H 0.09 0.56 4.48 -51.93 -0.23 0.32 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.09 0.69 7.49 -51.93 -0.39 0.30 16 41 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.40 4.69 8.35 -40.82 -0.34 4.35 16 43 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 48 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 382.37 15.07 5.76 5.76 Total: -1.00 -37.14 382.37 -8.86 -46.00 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -8.52 Total: -0.49 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: -0.64 Total: -1.93 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: -0.05 Total: -45.20 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.39 Total: -20.84 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.14 -8.86 -46.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.608 kcal (2) G-P(sol) polarization free energy of solvation -37.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds