Wall clock time and date at job start Fri Apr 10 2020 22:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.53002 * 109.46639 * 240.00047 * 2 1 3 5 5 C 1.50698 * 109.47145 * 120.00217 * 2 1 3 6 6 O 1.21283 * 120.00429 * 350.35595 * 5 2 1 7 7 N 1.34777 * 120.00022 * 170.62661 * 5 2 1 8 8 C 1.47432 * 125.64643 * 3.70295 * 7 5 2 9 9 C 1.55129 * 104.72301 * 155.81461 * 8 7 5 10 10 C 1.55163 * 101.48453 * 37.29534 * 9 8 7 11 11 C 1.47023 * 125.65079 * 184.00794 * 7 5 2 12 12 H 1.08997 * 109.88083 * 61.60671 * 11 7 5 13 13 C 1.50698 * 109.88190 * 300.59707 * 11 7 5 14 14 O 1.21280 * 120.00236 * 359.97438 * 13 11 7 15 15 N 1.34770 * 119.99839 * 180.02562 * 13 11 7 16 16 C 1.46506 * 119.99901 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47166 * 179.97438 * 16 15 13 18 18 C 1.53001 * 109.47438 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47364 * 180.02562 * 18 17 16 20 20 H 1.07994 * 119.99542 * 0.02562 * 19 18 17 21 21 C 1.37874 * 119.99844 * 179.97438 * 19 18 17 22 22 N 1.31519 * 119.99885 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99922 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.46698 * 90.00141 * 23 21 19 25 25 H 1.48495 * 109.46898 * 210.00282 * 23 21 19 26 26 H 1.48501 * 109.46938 * 330.00364 * 23 21 19 27 27 H 1.09006 * 109.47089 * 299.99524 * 1 2 3 28 28 H 1.08995 * 109.47523 * 59.99498 * 1 2 3 29 29 H 1.09007 * 109.46778 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46431 * 186.04925 * 3 2 1 31 31 H 1.08996 * 109.47337 * 306.04997 * 3 2 1 32 32 H 1.09003 * 109.46429 * 66.05323 * 3 2 1 33 33 H 1.08992 * 109.47653 * 299.99937 * 4 2 1 34 34 H 1.09000 * 109.47066 * 60.00391 * 4 2 1 35 35 H 1.09005 * 109.46542 * 179.97438 * 4 2 1 36 36 H 1.08999 * 110.36630 * 274.74682 * 8 7 5 37 37 H 1.09007 * 110.36232 * 37.06657 * 8 7 5 38 38 H 1.09003 * 111.19027 * 279.19342 * 9 8 7 39 39 H 1.08996 * 110.93642 * 155.29057 * 9 8 7 40 40 H 1.08996 * 110.71598 * 205.97161 * 10 9 8 41 41 H 1.08992 * 110.86950 * 82.76512 * 10 9 8 42 42 H 0.97002 * 120.00277 * 359.97438 * 15 13 11 43 43 H 1.09000 * 109.47057 * 299.99874 * 16 15 13 44 44 H 1.08995 * 109.47043 * 60.00096 * 16 15 13 45 45 H 1.08994 * 109.46980 * 300.00391 * 17 16 15 46 46 H 1.09009 * 109.46995 * 60.00161 * 17 16 15 47 47 H 1.09000 * 109.46941 * 300.00674 * 18 17 16 48 48 H 1.09002 * 109.46581 * 59.99848 * 18 17 16 49 49 H 0.96997 * 119.99396 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0324 -0.7104 1.2304 6 8 1.2583 -1.0166 2.1125 7 7 3.3428 -1.0008 1.3531 8 6 4.4010 -0.6156 0.4016 9 6 5.7041 -0.6078 1.2431 10 6 5.4711 -1.8189 2.1847 11 6 3.9528 -1.7596 2.4548 12 1 3.5415 -2.7686 2.4823 13 6 3.6889 -1.0628 3.7647 14 8 3.0531 -0.0302 3.7851 15 7 4.1602 -1.5867 4.9135 16 6 3.9032 -0.9097 6.1871 17 6 4.5418 -1.7066 7.3264 18 6 4.2740 -0.9993 8.6563 19 6 4.9035 -1.7840 9.7784 20 1 5.4413 -2.6957 9.5642 21 6 4.7938 -1.3373 11.0781 22 7 4.1393 -0.2267 11.3388 23 14 5.5736 -2.3103 12.4691 24 1 6.9640 -1.8360 12.6860 25 1 4.7847 -2.1159 13.7120 26 1 5.5920 -3.7523 12.1148 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1246 1.4444 -0.1083 31 1 1.5909 1.9867 -0.8308 32 1 1.7678 1.9240 0.9393 33 1 1.6766 -1.7489 -1.2494 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 4.4711 -1.3465 -0.4040 37 1 4.2047 0.3777 -0.0023 38 1 5.8001 0.3168 1.8123 39 1 6.5773 -0.7671 0.6104 40 1 6.0325 -1.7004 3.1114 41 1 5.7386 -2.7525 1.6899 42 1 4.6691 -2.4124 4.8973 43 1 4.3319 0.0921 6.1591 44 1 2.8279 -0.8402 6.3511 45 1 4.1127 -2.7082 7.3542 46 1 5.6173 -1.7765 7.1626 47 1 4.7033 0.0022 8.6281 48 1 3.1986 -0.9291 8.8203 49 1 4.0619 0.0873 12.2532 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609141596.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:22 Heat of formation + Delta-G solvation = -109.885837 kcal Electronic energy + Delta-G solvation = -26614.541257 eV Core-core repulsion = 22961.033802 eV Total energy + Delta-G solvation = -3653.507455 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.99443 -40.33373 -38.29833 -37.00795 -36.62750 -35.23847 -33.26594 -32.39854 -30.77185 -28.55386 -28.30300 -27.92550 -25.85797 -25.07479 -23.00448 -22.58154 -22.34931 -21.01512 -19.94220 -18.65371 -18.34632 -17.74852 -17.18574 -16.66372 -16.56602 -16.38174 -16.16639 -15.80581 -15.26739 -14.89479 -14.70703 -14.67453 -14.45583 -14.28067 -14.06178 -13.78398 -13.57159 -13.52366 -13.17828 -13.02103 -12.85555 -12.76654 -12.60024 -12.58589 -12.40758 -12.36485 -12.30751 -11.95182 -11.91838 -11.71707 -11.58465 -11.45419 -11.26856 -10.88309 -10.67095 -10.58318 -10.13259 -9.66891 -8.21778 -6.34142 1.39947 1.42196 1.53116 1.57042 1.61568 1.90113 2.28457 2.41583 3.11803 3.35306 3.54930 3.61324 3.74861 3.84130 3.91500 4.04156 4.13205 4.14019 4.19860 4.28590 4.44566 4.48488 4.56180 4.65149 4.72518 4.78906 4.84554 4.86292 4.87990 4.91939 4.93097 4.96360 5.04406 5.05083 5.11883 5.18652 5.21396 5.29434 5.34995 5.39728 5.40739 5.49060 5.65361 5.80378 6.18516 6.46986 6.58017 6.83367 7.17796 7.29417 7.35813 8.90705 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026305 B = 0.002484 C = 0.002362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.195235 B =11269.203888 C =11853.143288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.140 4.140 4 C -0.147 4.147 5 C 0.529 3.471 6 O -0.583 6.583 7 N -0.604 5.604 8 C 0.083 3.917 9 C -0.132 4.132 10 C -0.115 4.115 11 C 0.115 3.885 12 H 0.106 0.894 13 C 0.493 3.507 14 O -0.575 6.575 15 N -0.715 5.715 16 C 0.134 3.866 17 C -0.098 4.098 18 C 0.023 3.977 19 C -0.540 4.540 20 H 0.069 0.931 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.270 1.270 25 H -0.285 1.285 26 H -0.259 1.259 27 H 0.032 0.968 28 H 0.092 0.908 29 H 0.049 0.951 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.028 0.972 33 H 0.054 0.946 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.112 0.888 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.127 0.873 40 H 0.088 0.912 41 H 0.127 0.873 42 H 0.416 0.584 43 H 0.047 0.953 44 H 0.033 0.967 45 H 0.066 0.934 46 H 0.075 0.925 47 H -0.009 1.009 48 H -0.014 1.014 49 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.857 -3.914 -33.094 33.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.082 4.082 3 C -0.197 4.197 4 C -0.204 4.204 5 C 0.319 3.681 6 O -0.461 6.461 7 N -0.338 5.338 8 C -0.037 4.037 9 C -0.169 4.169 10 C -0.153 4.153 11 C 0.007 3.993 12 H 0.124 0.876 13 C 0.279 3.721 14 O -0.453 6.453 15 N -0.368 5.368 16 C 0.010 3.990 17 C -0.136 4.136 18 C -0.014 4.014 19 C -0.578 4.578 20 H 0.087 0.913 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.195 1.195 25 H -0.211 1.211 26 H -0.183 1.183 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.114 0.886 32 H 0.047 0.953 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.106 0.894 41 H 0.145 0.855 42 H 0.253 0.747 43 H 0.066 0.934 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.093 0.907 47 H 0.010 0.990 48 H 0.004 0.996 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.846 -3.207 -32.501 32.884 hybrid contribution -0.259 -0.216 1.857 1.888 sum 3.587 -3.423 -30.644 31.042 Atomic orbital electron populations 1.21673 0.92634 1.01993 1.02082 1.20819 0.97439 0.96980 0.93003 1.21966 1.02539 0.92911 1.02277 1.22157 1.03399 0.99972 0.94822 1.21094 0.80582 0.77965 0.88413 1.90694 1.56596 1.55063 1.43765 1.48375 1.06726 1.55450 1.23223 1.23181 0.85487 1.02692 0.92362 1.22929 0.98280 0.97583 0.98148 1.22787 0.88250 1.02021 1.02266 1.21736 0.98132 0.95466 0.83989 0.87610 1.21697 0.78120 0.85277 0.86985 1.90684 1.40618 1.26290 1.87690 1.45916 1.56672 1.28589 1.05642 1.21143 0.98837 0.96065 0.82991 1.21580 1.00640 0.98721 0.92662 1.18945 0.94947 0.95082 0.92457 1.21669 1.34280 1.09411 0.92465 0.91265 1.26091 0.95877 0.96164 1.02211 1.70132 1.43273 1.23650 1.20724 0.85357 0.78303 0.79243 0.77596 1.19531 1.21112 1.18307 0.94874 0.88928 0.93185 0.90149 0.88642 0.95316 0.92663 0.89163 0.89220 0.87061 0.88792 0.92628 0.85471 0.89375 0.85506 0.74738 0.93444 0.94823 0.91545 0.90650 0.99011 0.99579 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.61 7.82 71.98 0.56 -2.05 16 2 C -0.08 -1.51 0.75 -52.93 -0.04 -1.55 16 3 C -0.14 -2.33 8.30 71.98 0.60 -1.73 16 4 C -0.15 -1.49 8.16 71.98 0.59 -0.90 16 5 C 0.53 15.07 5.82 87.66 0.51 15.58 16 6 O -0.58 -23.57 14.81 15.05 0.22 -23.35 16 7 N -0.60 -13.19 2.85 -791.72 -2.26 -15.45 16 8 C 0.08 0.89 4.91 86.93 0.43 1.32 16 9 C -0.13 -1.26 7.10 32.07 0.23 -1.03 16 10 C -0.12 -1.29 6.45 31.79 0.21 -1.09 16 11 C 0.11 2.50 3.31 44.59 0.15 2.65 16 12 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 13 C 0.49 16.28 6.69 87.66 0.59 16.87 16 14 O -0.57 -25.39 14.71 15.07 0.22 -25.16 16 15 N -0.71 -21.81 5.25 -463.06 -2.43 -24.24 16 16 C 0.13 5.26 5.67 86.38 0.49 5.75 16 17 C -0.10 -3.98 5.27 30.59 0.16 -3.82 16 18 C 0.02 1.27 4.97 29.85 0.15 1.42 16 19 C -0.54 -30.85 9.11 25.60 0.23 -30.61 16 20 H 0.07 3.68 7.74 -2.91 -0.02 3.65 16 21 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 22 N -0.94 -58.78 13.29 21.45 0.28 -58.49 16 23 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 26 H -0.26 -11.16 7.11 99.48 0.71 -10.45 16 27 H 0.03 0.88 7.99 -2.38 -0.02 0.86 16 28 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.05 1.10 8.14 -2.38 -0.02 1.08 16 30 H 0.08 1.05 5.10 -2.39 -0.01 1.03 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.09 0.56 4.16 -2.38 -0.01 0.55 16 36 H 0.11 0.47 6.91 -2.39 -0.02 0.46 16 37 H 0.09 0.89 4.48 -2.38 -0.01 0.88 16 38 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.13 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.09 1.07 7.49 -2.39 -0.02 1.06 16 41 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.42 9.27 8.35 -92.71 -0.77 8.49 16 43 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 44 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 45 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 46 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 47 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 48 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 49 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -88.73 382.37 3.53 -85.19 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.16 Total: 14.10 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: 5.31 Total: 0.90 kcal Atomic # 7 Polarization: -93.78 SS G_CDS: -4.40 Total: -98.18 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: 0.44 Total: -48.51 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -88.73 3.53 -85.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609141596.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.693 kcal (2) G-P(sol) polarization free energy of solvation -88.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds