Wall clock time and date at job start Fri Apr 10 2020 22:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47227 * 119.99898 * 2 1 3 5 5 H 1.08997 * 109.99017 * 307.31403 * 4 2 1 6 6 O 1.43748 * 109.88050 * 186.23581 * 4 2 1 7 7 C 1.44382 * 106.97074 * 214.06418 * 6 4 2 8 8 C 1.54994 * 103.49498 * 40.05599 * 7 6 4 9 9 C 1.54096 * 109.87789 * 68.40145 * 4 2 1 10 10 H 1.09003 * 110.60151 * 240.18567 * 9 4 2 11 11 C 1.50699 * 110.48872 * 2.77655 * 9 4 2 12 12 O 1.21278 * 119.99883 * 65.80909 * 11 9 4 13 13 N 1.34771 * 120.00174 * 245.80546 * 11 9 4 14 14 C 1.46503 * 120.00128 * 180.02562 * 13 11 9 15 15 C 1.53040 * 109.45635 * 275.06746 * 14 13 11 16 16 C 1.53199 * 109.31145 * 178.61412 * 15 14 13 17 17 N 1.46927 * 108.77467 * 54.63259 * 16 15 14 18 18 C 1.36940 * 120.62591 * 126.37254 * 17 16 15 19 19 H 1.07997 * 119.99376 * 211.28270 * 18 17 16 20 20 C 1.38808 * 120.00202 * 31.28476 * 18 17 16 21 21 N 1.31621 * 120.00009 * 11.00237 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 191.00252 * 20 18 17 23 23 H 1.48502 * 109.46747 * 60.00085 * 22 20 18 24 24 H 1.48498 * 109.47098 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47262 * 300.00196 * 22 20 18 26 26 C 1.46920 * 118.74125 * 306.39551 * 17 16 15 27 27 C 1.53037 * 109.46164 * 155.00028 * 14 13 11 28 28 H 1.08993 * 109.47200 * 308.38149 * 1 2 3 29 29 H 1.08999 * 109.46575 * 68.38824 * 1 2 3 30 30 H 1.09001 * 109.46706 * 188.37942 * 1 2 3 31 31 H 1.09001 * 109.47838 * 239.99872 * 2 1 3 32 32 H 1.08992 * 109.47173 * 305.10204 * 3 2 1 33 33 H 1.09003 * 109.46778 * 65.09814 * 3 2 1 34 34 H 1.09004 * 109.47222 * 185.09679 * 3 2 1 35 35 H 1.09005 * 110.61535 * 281.55176 * 7 6 4 36 36 H 1.09003 * 110.61590 * 158.55913 * 7 6 4 37 37 H 1.08995 * 110.90925 * 204.78048 * 8 7 6 38 38 H 1.09004 * 110.90495 * 81.17468 * 8 7 6 39 39 H 0.97003 * 120.00598 * 359.97438 * 13 11 9 40 40 H 1.08998 * 109.44916 * 35.03183 * 14 13 11 41 41 H 1.09002 * 109.49854 * 298.56187 * 15 14 13 42 42 H 1.08994 * 109.49812 * 58.66301 * 15 14 13 43 43 H 1.08997 * 109.58307 * 294.84716 * 16 15 14 44 44 H 1.08995 * 109.58785 * 174.42555 * 16 15 14 45 45 H 0.96996 * 119.99705 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58785 * 293.82029 * 26 17 16 47 47 H 1.09000 * 109.70782 * 173.46904 * 26 17 16 48 48 H 1.08999 * 109.50100 * 301.33403 * 27 14 13 49 49 H 1.09003 * 109.50240 * 61.40033 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5788 -0.2949 2.1401 6 8 3.4699 -0.6005 1.3339 7 6 3.9624 -1.8252 1.9189 8 6 3.0912 -2.9203 1.2524 9 6 1.7118 -2.2240 1.1574 10 1 1.0729 -2.5285 1.9865 11 6 1.0509 -2.5400 -0.1596 12 8 1.6713 -2.4165 -1.1943 13 7 -0.2294 -2.9600 -0.1875 14 6 -0.8716 -3.2677 -1.4678 15 6 -1.4323 -1.9816 -2.0790 16 6 -2.0725 -2.3016 -3.4336 17 7 -3.0688 -3.3650 -3.2463 18 6 -4.3573 -3.1979 -3.6791 19 1 -5.1703 -3.6734 -3.1506 20 6 -4.6183 -2.4174 -4.7968 21 7 -3.6279 -2.0171 -5.5658 22 14 -6.3751 -1.9351 -5.2097 23 1 -6.9516 -1.1553 -4.0850 24 1 -6.3844 -1.1064 -6.4419 25 1 -7.1859 -3.1595 -5.4298 26 6 -2.6567 -4.6108 -2.5854 27 6 -2.0100 -4.2650 -1.2405 28 1 -0.3633 0.6380 0.8055 29 1 -0.3632 0.3785 -0.9554 30 1 -0.3633 -1.0167 0.1498 31 1 1.8934 -0.5138 -0.8899 32 1 1.6040 1.9820 -0.8407 33 1 1.7531 1.9293 0.9322 34 1 3.1262 1.4439 -0.0913 35 1 3.8143 -1.8214 2.9988 36 1 5.0148 -1.9709 1.6752 37 1 3.0357 -3.8092 1.8808 38 1 3.4703 -3.1692 0.2612 39 1 -0.7255 -3.0592 0.6401 40 1 -0.1380 -3.7026 -2.1466 41 1 -2.1840 -1.5594 -1.4121 42 1 -0.6246 -1.2632 -2.2190 43 1 -1.3047 -2.6387 -4.1300 44 1 -2.5596 -1.4096 -3.8273 45 1 -3.8103 -1.4714 -6.3467 46 1 -1.9366 -5.1363 -3.2127 47 1 -3.5279 -5.2446 -2.4198 48 1 -1.6136 -5.1717 -0.7836 49 1 -2.7560 -3.8215 -0.5809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617950239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:25 Heat of formation + Delta-G solvation = -63.589980 kcal Electronic energy + Delta-G solvation = -27903.268658 eV Core-core repulsion = 24251.768742 eV Total energy + Delta-G solvation = -3651.499916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07153 -38.79043 -37.20087 -34.97989 -34.46657 -32.66098 -31.93767 -30.10025 -29.54421 -28.52646 -27.00122 -25.22080 -23.71337 -22.55654 -22.22039 -21.46179 -20.81892 -19.80955 -19.07705 -17.10452 -16.98820 -16.56822 -15.95693 -15.74123 -15.42660 -14.88174 -14.67330 -14.04649 -13.71149 -13.68075 -13.49532 -13.27893 -12.97999 -12.87971 -12.53693 -12.40665 -12.20193 -12.13044 -12.00069 -11.71681 -11.46970 -11.33267 -11.14532 -10.98795 -10.91343 -10.74663 -10.72441 -10.56488 -10.29560 -10.24383 -10.02938 -9.94302 -9.74942 -9.65102 -9.34238 -8.62314 -8.40967 -6.63319 -5.77984 -3.26544 2.67181 3.26990 3.37944 3.43338 3.43964 3.65871 4.29073 4.46403 4.48262 4.64242 4.80698 4.96543 5.02543 5.06722 5.19662 5.27531 5.31328 5.41911 5.43758 5.49158 5.52997 5.53819 5.63344 5.74545 5.79317 5.81261 5.86355 5.94637 6.05442 6.07826 6.22687 6.28591 6.32234 6.40195 6.43476 6.54936 6.61097 6.65531 6.75846 6.79764 6.90553 6.94420 7.39510 7.65740 7.72208 7.78686 8.36592 8.47780 9.22144 9.83470 10.41561 11.29988 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003494 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.248584 B = 8012.642957 C = 8703.636622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.119 4.119 3 C -0.136 4.136 4 C 0.103 3.897 5 H 0.073 0.927 6 O -0.364 6.364 7 C 0.048 3.952 8 C -0.141 4.141 9 C -0.145 4.145 10 H 0.096 0.904 11 C 0.529 3.471 12 O -0.528 6.528 13 N -0.725 5.725 14 C 0.150 3.850 15 C -0.147 4.147 16 C 0.174 3.826 17 N -0.592 5.592 18 C -0.256 4.256 19 H 0.064 0.936 20 C 0.006 3.994 21 N -0.903 5.903 22 Si 0.905 3.095 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.149 3.851 27 C -0.139 4.139 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.047 0.953 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.092 0.908 39 H 0.394 0.606 40 H 0.081 0.919 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.019 0.981 44 H 0.090 0.910 45 H 0.255 0.745 46 H 0.019 0.981 47 H 0.057 0.943 48 H 0.054 0.946 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.436 -0.007 17.508 20.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.138 4.138 3 C -0.194 4.194 4 C 0.045 3.955 5 H 0.091 0.909 6 O -0.283 6.283 7 C -0.029 4.029 8 C -0.179 4.179 9 C -0.167 4.167 10 H 0.114 0.886 11 C 0.315 3.685 12 O -0.405 6.405 13 N -0.375 5.375 14 C 0.047 3.953 15 C -0.187 4.187 16 C 0.048 3.952 17 N -0.315 5.315 18 C -0.386 4.386 19 H 0.081 0.919 20 C -0.193 4.193 21 N -0.547 5.547 22 Si 0.734 3.266 23 H -0.210 1.210 24 H -0.216 1.216 25 H -0.209 1.209 26 C 0.021 3.979 27 C -0.179 4.179 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.126 0.874 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.112 0.888 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.228 0.772 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.037 0.963 44 H 0.108 0.892 45 H 0.065 0.935 46 H 0.037 0.963 47 H 0.076 0.924 48 H 0.072 0.928 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.977 0.352 16.498 20.390 hybrid contribution -1.333 0.033 0.355 1.380 sum 10.643 0.385 16.852 19.936 Atomic orbital electron populations 1.22369 0.94249 1.03620 1.02401 1.21734 0.96007 0.97257 0.98768 1.21678 1.01375 0.95253 1.01063 1.22623 0.82174 0.91991 0.98712 0.90945 1.88917 1.19519 1.36941 1.82952 1.23526 0.99099 0.83416 0.96834 1.23138 0.92739 0.98574 1.03415 1.22814 0.98748 0.98008 0.97115 0.88590 1.19942 0.81739 0.76313 0.90469 1.90673 1.63796 1.51486 1.34514 1.46540 1.12581 1.67792 1.10622 1.21058 0.94049 0.96608 0.83577 1.22659 0.99307 0.95944 1.00834 1.20776 0.90535 0.93818 0.90084 1.44046 1.08163 1.10994 1.68286 1.19117 0.83395 1.29651 1.06463 0.91878 1.25169 0.97226 1.01546 0.95397 1.69970 1.30035 1.39034 1.15631 0.86349 0.84494 0.78277 0.77457 1.21002 1.21588 1.20869 1.20833 0.96871 0.89822 0.90328 1.22339 0.97053 0.97476 1.01024 0.93207 0.91600 0.90590 0.87441 0.92790 0.93403 0.92252 0.92200 0.88769 0.89875 0.88979 0.77208 0.90101 0.92707 0.92467 0.96267 0.89204 0.93486 0.96292 0.92419 0.92763 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 7.70 37.16 0.29 -1.91 16 2 C -0.12 -1.59 2.22 -90.62 -0.20 -1.79 16 3 C -0.14 -1.68 8.89 37.16 0.33 -1.35 16 4 C 0.10 1.18 2.98 -26.16 -0.08 1.10 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 O -0.36 -4.46 10.39 -35.23 -0.37 -4.82 16 7 C 0.05 0.43 7.72 38.21 0.29 0.72 16 8 C -0.14 -1.33 6.66 -24.73 -0.16 -1.49 16 9 C -0.14 -1.51 3.26 -90.25 -0.29 -1.81 16 10 H 0.10 0.73 7.99 -51.93 -0.41 0.32 16 11 C 0.53 7.27 3.96 -10.99 -0.04 7.22 16 12 O -0.53 -9.42 13.65 5.56 0.08 -9.34 16 13 N -0.72 -9.42 3.42 -53.77 -0.18 -9.60 16 14 C 0.15 2.50 2.42 -67.89 -0.16 2.33 16 15 C -0.15 -2.82 4.59 -26.61 -0.12 -2.94 16 16 C 0.17 4.18 5.26 -3.71 -0.02 4.16 16 17 N -0.59 -14.60 2.99 -172.32 -0.51 -15.12 16 18 C -0.26 -6.95 9.58 -15.06 -0.14 -7.09 16 19 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 20 C 0.01 0.15 5.04 -17.43 -0.09 0.07 16 21 N -0.90 -26.21 11.06 55.49 0.61 -25.59 16 22 Si 0.90 21.54 29.57 -169.99 -5.03 16.52 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.15 3.02 6.51 -3.71 -0.02 2.99 16 27 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 28 H 0.05 0.56 8.13 -51.93 -0.42 0.14 16 29 H 0.06 0.96 7.25 -51.93 -0.38 0.58 16 30 H 0.08 0.98 3.40 -51.93 -0.18 0.80 16 31 H 0.11 1.77 5.39 -51.93 -0.28 1.49 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.75 7.73 -51.93 -0.40 0.35 16 35 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.09 1.08 7.35 -51.93 -0.38 0.70 16 39 H 0.39 3.99 8.45 -40.82 -0.34 3.65 16 40 H 0.08 1.54 7.58 -51.93 -0.39 1.15 16 41 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.10 6.59 -51.93 -0.34 0.76 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.09 2.43 6.11 -51.93 -0.32 2.11 16 45 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.06 1.13 7.94 -51.93 -0.41 0.72 16 48 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 49 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 364.35 15.07 5.49 5.49 Total: -1.00 -31.22 364.35 -8.95 -40.17 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -8.46 Total: 4.45 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -0.58 Total: -2.15 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: -0.08 Total: -50.31 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.29 Total: -14.17 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.22 -8.95 -40.17 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.423 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds