Wall clock time and date at job start Fri Apr 10 2020 22:27:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47039 * 2 1 4 4 C 1.53004 * 109.47227 * 119.99898 * 2 1 3 5 5 H 1.08997 * 109.99017 * 307.31403 * 4 2 1 6 6 O 1.43748 * 109.88050 * 186.23581 * 4 2 1 7 7 C 1.44382 * 106.97074 * 214.06418 * 6 4 2 8 8 C 1.54994 * 103.49498 * 40.05599 * 7 6 4 9 9 C 1.54096 * 109.87789 * 68.40145 * 4 2 1 10 10 H 1.09003 * 110.60151 * 240.18567 * 9 4 2 11 11 C 1.50699 * 110.48872 * 2.77655 * 9 4 2 12 12 O 1.21278 * 119.99883 * 65.80909 * 11 9 4 13 13 N 1.34771 * 120.00174 * 245.80546 * 11 9 4 14 14 C 1.46503 * 120.00128 * 180.02562 * 13 11 9 15 15 C 1.53040 * 109.45635 * 275.06746 * 14 13 11 16 16 C 1.53199 * 109.31145 * 178.61412 * 15 14 13 17 17 N 1.46927 * 108.77467 * 54.63259 * 16 15 14 18 18 C 1.36940 * 120.62591 * 126.37254 * 17 16 15 19 19 H 1.07997 * 119.99376 * 211.28270 * 18 17 16 20 20 C 1.38808 * 120.00202 * 31.28476 * 18 17 16 21 21 N 1.31621 * 120.00009 * 11.00237 * 20 18 17 22 22 Si 1.86804 * 119.99947 * 191.00252 * 20 18 17 23 23 H 1.48502 * 109.46747 * 60.00085 * 22 20 18 24 24 H 1.48498 * 109.47098 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.47262 * 300.00196 * 22 20 18 26 26 C 1.46920 * 118.74125 * 306.39551 * 17 16 15 27 27 C 1.53037 * 109.46164 * 155.00028 * 14 13 11 28 28 H 1.08993 * 109.47200 * 308.38149 * 1 2 3 29 29 H 1.08999 * 109.46575 * 68.38824 * 1 2 3 30 30 H 1.09001 * 109.46706 * 188.37942 * 1 2 3 31 31 H 1.09001 * 109.47838 * 239.99872 * 2 1 3 32 32 H 1.08992 * 109.47173 * 305.10204 * 3 2 1 33 33 H 1.09003 * 109.46778 * 65.09814 * 3 2 1 34 34 H 1.09004 * 109.47222 * 185.09679 * 3 2 1 35 35 H 1.09005 * 110.61535 * 281.55176 * 7 6 4 36 36 H 1.09003 * 110.61590 * 158.55913 * 7 6 4 37 37 H 1.08995 * 110.90925 * 204.78048 * 8 7 6 38 38 H 1.09004 * 110.90495 * 81.17468 * 8 7 6 39 39 H 0.97003 * 120.00598 * 359.97438 * 13 11 9 40 40 H 1.08998 * 109.44916 * 35.03183 * 14 13 11 41 41 H 1.09002 * 109.49854 * 298.56187 * 15 14 13 42 42 H 1.08994 * 109.49812 * 58.66301 * 15 14 13 43 43 H 1.08997 * 109.58307 * 294.84716 * 16 15 14 44 44 H 1.08995 * 109.58785 * 174.42555 * 16 15 14 45 45 H 0.96996 * 119.99705 * 180.02562 * 21 20 18 46 46 H 1.09005 * 109.58785 * 293.82029 * 26 17 16 47 47 H 1.09000 * 109.70782 * 173.46904 * 26 17 16 48 48 H 1.08999 * 109.50100 * 301.33403 * 27 14 13 49 49 H 1.09003 * 109.50240 * 61.40033 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.5788 -0.2949 2.1401 6 8 3.4699 -0.6005 1.3339 7 6 3.9624 -1.8252 1.9189 8 6 3.0912 -2.9203 1.2524 9 6 1.7118 -2.2240 1.1574 10 1 1.0729 -2.5285 1.9865 11 6 1.0509 -2.5400 -0.1596 12 8 1.6713 -2.4165 -1.1943 13 7 -0.2294 -2.9600 -0.1875 14 6 -0.8716 -3.2677 -1.4678 15 6 -1.4323 -1.9816 -2.0790 16 6 -2.0725 -2.3016 -3.4336 17 7 -3.0688 -3.3650 -3.2463 18 6 -4.3573 -3.1979 -3.6791 19 1 -5.1703 -3.6734 -3.1506 20 6 -4.6183 -2.4174 -4.7968 21 7 -3.6279 -2.0171 -5.5658 22 14 -6.3751 -1.9351 -5.2097 23 1 -6.9516 -1.1553 -4.0850 24 1 -6.3844 -1.1064 -6.4419 25 1 -7.1859 -3.1595 -5.4298 26 6 -2.6567 -4.6108 -2.5854 27 6 -2.0100 -4.2650 -1.2405 28 1 -0.3633 0.6380 0.8055 29 1 -0.3632 0.3785 -0.9554 30 1 -0.3633 -1.0167 0.1498 31 1 1.8934 -0.5138 -0.8899 32 1 1.6040 1.9820 -0.8407 33 1 1.7531 1.9293 0.9322 34 1 3.1262 1.4439 -0.0913 35 1 3.8143 -1.8214 2.9988 36 1 5.0148 -1.9709 1.6752 37 1 3.0357 -3.8092 1.8808 38 1 3.4703 -3.1692 0.2612 39 1 -0.7255 -3.0592 0.6401 40 1 -0.1380 -3.7026 -2.1466 41 1 -2.1840 -1.5594 -1.4121 42 1 -0.6246 -1.2632 -2.2190 43 1 -1.3047 -2.6387 -4.1300 44 1 -2.5596 -1.4096 -3.8273 45 1 -3.8103 -1.4714 -6.3467 46 1 -1.9366 -5.1363 -3.2127 47 1 -3.5279 -5.2446 -2.4198 48 1 -1.6136 -5.1717 -0.7836 49 1 -2.7560 -3.8215 -0.5809 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617950239.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:24 Heat of formation + Delta-G solvation = -83.764238 kcal Electronic energy + Delta-G solvation = -27904.143480 eV Core-core repulsion = 24251.768742 eV Total energy + Delta-G solvation = -3652.374738 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.08185 -39.92991 -38.67945 -36.05329 -35.92785 -34.04747 -33.22222 -31.74242 -31.18598 -29.42611 -28.02690 -27.00762 -24.90812 -23.86903 -23.61782 -22.72110 -21.86516 -21.15973 -20.43113 -18.80920 -17.97597 -17.76637 -17.01023 -16.78685 -16.78183 -16.35153 -15.90393 -15.47151 -15.33895 -14.91715 -14.78748 -14.61814 -14.40062 -14.11346 -14.07486 -13.58538 -13.30957 -13.17515 -13.02090 -12.91552 -12.87035 -12.66398 -12.57903 -12.49734 -12.25697 -12.09065 -12.06711 -11.91422 -11.78442 -11.70539 -11.56343 -11.42244 -11.28771 -10.80481 -10.57761 -10.43086 -9.80944 -8.65758 -7.86494 -5.38581 1.47331 1.49567 1.56389 1.60508 2.16954 2.50977 2.89469 3.30149 3.45388 3.58082 3.67952 3.82146 3.92551 4.01748 4.07026 4.14217 4.21469 4.26196 4.35107 4.36225 4.44592 4.49424 4.65462 4.69424 4.73491 4.78740 4.81859 4.85368 4.86700 4.89959 4.95713 5.03623 5.07702 5.10138 5.12156 5.16088 5.27519 5.33216 5.39891 5.46188 5.48769 5.61085 5.63985 5.71899 5.98651 6.40653 6.62779 7.14688 7.32684 7.84237 8.37942 9.19569 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.023982 B = 0.003494 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.248584 B = 8012.642957 C = 8703.636622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.122 4.122 3 C -0.133 4.133 4 C 0.104 3.896 5 H 0.100 0.900 6 O -0.391 6.391 7 C 0.045 3.955 8 C -0.139 4.139 9 C -0.139 4.139 10 H 0.139 0.861 11 C 0.527 3.473 12 O -0.574 6.574 13 N -0.710 5.710 14 C 0.163 3.837 15 C -0.127 4.127 16 C 0.183 3.817 17 N -0.609 5.609 18 C -0.264 4.264 19 H 0.073 0.927 20 C -0.052 4.052 21 N -0.940 5.940 22 Si 0.971 3.029 23 H -0.275 1.275 24 H -0.298 1.298 25 H -0.273 1.273 26 C 0.141 3.859 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.045 0.955 33 H 0.066 0.934 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.048 0.952 43 H -0.017 1.017 44 H 0.054 0.946 45 H 0.249 0.751 46 H 0.008 0.992 47 H 0.067 0.933 48 H 0.091 0.909 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.783 -0.853 21.679 24.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.140 4.140 3 C -0.190 4.190 4 C 0.046 3.954 5 H 0.118 0.882 6 O -0.311 6.311 7 C -0.031 4.031 8 C -0.177 4.177 9 C -0.160 4.160 10 H 0.157 0.843 11 C 0.316 3.684 12 O -0.454 6.454 13 N -0.362 5.362 14 C 0.058 3.942 15 C -0.167 4.167 16 C 0.057 3.943 17 N -0.333 5.333 18 C -0.394 4.394 19 H 0.090 0.910 20 C -0.247 4.247 21 N -0.586 5.586 22 Si 0.799 3.201 23 H -0.200 1.200 24 H -0.224 1.224 25 H -0.199 1.199 26 C 0.015 3.985 27 C -0.161 4.161 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.085 0.915 34 H 0.069 0.931 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.133 0.867 38 H 0.078 0.922 39 H 0.253 0.747 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.066 0.934 43 H 0.001 0.999 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.026 0.974 47 H 0.085 0.915 48 H 0.109 0.891 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.320 -0.526 20.737 23.631 hybrid contribution -1.051 0.264 -0.986 1.465 sum 10.269 -0.261 19.751 22.263 Atomic orbital electron populations 1.22303 0.94059 1.04021 1.01769 1.21653 0.96163 0.97594 0.98607 1.21638 1.00710 0.94972 1.01684 1.22679 0.82177 0.92327 0.98254 0.88238 1.88893 1.19954 1.38603 1.83625 1.23755 0.99281 0.81781 0.98238 1.23152 0.92049 1.00025 1.02469 1.22911 0.99586 0.97630 0.95917 0.84267 1.20623 0.81448 0.75022 0.91334 1.90678 1.64893 1.53069 1.36739 1.46222 1.12554 1.67483 1.09938 1.20611 0.93756 0.94990 0.84845 1.22351 0.98755 0.97363 0.98222 1.20468 0.89482 0.92358 0.92005 1.44290 1.07601 1.12673 1.68708 1.19534 0.84713 1.28968 1.06192 0.90969 1.25984 1.01008 1.02135 0.95600 1.70169 1.32128 1.40128 1.16129 0.85293 0.79965 0.77993 0.76881 1.20033 1.22411 1.19869 1.21039 0.97335 0.88160 0.91966 1.22133 0.96591 0.98805 0.98557 0.90942 0.94272 0.90374 0.91383 0.93603 0.91524 0.93117 0.89198 0.88197 0.86671 0.92169 0.74743 0.92927 0.91987 0.93357 0.99861 0.92806 0.94225 0.97413 0.91499 0.89071 0.90505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 7.70 71.98 0.55 -3.53 16 2 C -0.12 -3.17 2.22 -10.79 -0.02 -3.20 16 3 C -0.13 -3.22 8.89 71.98 0.64 -2.58 16 4 C 0.10 2.09 2.98 30.97 0.09 2.18 16 5 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 6 O -0.39 -8.81 10.39 -148.98 -1.55 -10.36 16 7 C 0.05 0.67 7.72 72.66 0.56 1.23 16 8 C -0.14 -2.24 6.66 31.89 0.21 -2.03 16 9 C -0.14 -2.43 3.26 -10.55 -0.03 -2.47 16 10 H 0.14 1.27 7.99 -2.39 -0.02 1.26 16 11 C 0.53 13.77 3.96 87.66 0.35 14.11 16 12 O -0.57 -21.10 13.65 -3.02 -0.04 -21.14 16 13 N -0.71 -16.75 3.42 -442.42 -1.51 -18.26 16 14 C 0.16 5.29 2.42 45.02 0.11 5.40 16 15 C -0.13 -4.97 4.59 30.67 0.14 -4.83 16 16 C 0.18 9.29 5.26 86.36 0.45 9.75 16 17 N -0.61 -30.59 2.99 -699.10 -2.09 -32.67 16 18 C -0.26 -14.40 9.58 84.03 0.81 -13.59 16 19 H 0.07 3.74 7.85 -2.91 -0.02 3.72 16 20 C -0.05 -2.93 5.04 84.86 0.43 -2.50 16 21 N -0.94 -57.03 11.06 21.65 0.24 -56.79 16 22 Si 0.97 44.88 29.57 68.60 2.03 46.91 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.14 5.62 6.51 86.36 0.56 6.18 16 27 C -0.12 -3.58 5.55 30.67 0.17 -3.41 16 28 H 0.07 1.46 8.13 -2.39 -0.02 1.44 16 29 H 0.04 1.16 7.25 -2.39 -0.02 1.15 16 30 H 0.08 1.86 3.40 -2.39 -0.01 1.85 16 31 H 0.07 2.36 5.39 -2.39 -0.01 2.34 16 32 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.05 1.30 7.73 -2.38 -0.02 1.28 16 35 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 36 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 1.37 7.35 -2.38 -0.02 1.36 16 39 H 0.41 6.55 8.45 -92.71 -0.78 5.77 16 40 H 0.05 2.05 7.58 -2.39 -0.02 2.03 16 41 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.05 1.97 6.59 -2.39 -0.02 1.95 16 43 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 44 H 0.05 3.09 6.11 -2.39 -0.01 3.08 16 45 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 46 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 47 H 0.07 2.52 7.94 -2.39 -0.02 2.50 16 48 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 49 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -73.36 364.35 2.25 -71.11 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.15 Total: 20.49 kcal Atomic # 6 Polarization: -4.31 SS G_CDS: 5.02 Total: 0.71 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -3.36 Total: -107.72 kcal Atomic # 8 Polarization: -29.91 SS G_CDS: -1.59 Total: -31.50 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -73.36 2.25 -71.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950239.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.653 kcal (2) G-P(sol) polarization free energy of solvation -73.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds