Wall clock time and date at job start Fri Apr 10 2020 22:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47230 * 2 1 4 4 C 1.53001 * 109.47195 * 120.00216 * 2 1 3 5 5 H 1.09009 * 110.41777 * 302.30716 * 4 2 1 6 6 O 1.44425 * 110.37454 * 64.61754 * 4 2 1 7 7 C 1.44421 * 105.27655 * 159.34788 * 6 4 2 8 8 C 1.54485 * 104.80025 * 319.48887 * 7 6 4 9 9 C 1.54478 * 110.37559 * 180.02562 * 4 2 1 10 10 H 1.09001 * 110.62336 * 335.88856 * 9 4 2 11 11 C 1.50700 * 110.51125 * 98.54026 * 9 4 2 12 12 O 1.21271 * 120.00379 * 356.09899 * 11 9 4 13 13 N 1.34778 * 119.99798 * 176.09996 * 11 9 4 14 14 C 1.46496 * 120.00273 * 180.02562 * 13 11 9 15 15 C 1.53045 * 109.46215 * 154.99748 * 14 13 11 16 16 C 1.53189 * 109.30964 * 181.37334 * 15 14 13 17 17 N 1.46932 * 108.89486 * 305.29189 * 16 15 14 18 18 C 1.36934 * 120.62713 * 233.67791 * 17 16 15 19 19 H 1.07999 * 120.00365 * 27.39524 * 18 17 16 20 20 C 1.38820 * 119.99352 * 207.39446 * 18 17 16 21 21 N 1.31613 * 120.00097 * 17.26040 * 20 18 17 22 22 Si 1.86807 * 119.99669 * 197.26046 * 20 18 17 23 23 H 1.48505 * 109.47107 * 90.00031 * 22 20 18 24 24 H 1.48498 * 109.47190 * 209.99825 * 22 20 18 25 25 H 1.48496 * 109.47303 * 330.00267 * 22 20 18 26 26 C 1.47199 * 118.55133 * 53.54206 * 17 16 15 27 27 C 1.53044 * 109.44899 * 275.05938 * 14 13 11 28 28 H 1.08998 * 109.47250 * 300.00223 * 1 2 3 29 29 H 1.09001 * 109.47254 * 60.00236 * 1 2 3 30 30 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47250 * 239.99776 * 2 1 3 32 32 H 1.09001 * 109.46810 * 300.00036 * 3 2 1 33 33 H 1.08995 * 109.46703 * 59.99771 * 3 2 1 34 34 H 1.09005 * 109.46918 * 180.02562 * 3 2 1 35 35 H 1.09004 * 110.37312 * 200.66156 * 7 6 4 36 36 H 1.09003 * 110.37532 * 78.31792 * 7 6 4 37 37 H 1.09005 * 110.50895 * 265.33205 * 8 7 6 38 38 H 1.09002 * 110.62615 * 142.68496 * 8 7 6 39 39 H 0.97002 * 120.00140 * 359.97438 * 13 11 9 40 40 H 1.09005 * 109.45832 * 35.02232 * 14 13 11 41 41 H 1.08994 * 109.49759 * 61.42304 * 15 14 13 42 42 H 1.08999 * 109.52410 * 301.33915 * 15 14 13 43 43 H 1.09005 * 109.59042 * 65.15548 * 16 15 14 44 44 H 1.09001 * 109.58782 * 185.43429 * 16 15 14 45 45 H 0.97008 * 119.99917 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.53355 * 186.67380 * 26 17 16 47 47 H 1.09002 * 109.67913 * 66.37168 * 26 17 16 48 48 H 1.08997 * 109.49664 * 298.57053 * 27 14 13 49 49 H 1.09005 * 109.49458 * 58.66540 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6520 -0.2438 2.1491 6 8 1.6604 -2.1144 1.2157 7 6 2.5698 -2.7784 2.1200 8 6 3.9412 -2.1178 1.8563 9 6 3.5846 -0.7329 1.2706 10 1 3.9833 -0.6310 0.2613 11 6 4.1087 0.3670 2.1576 12 8 3.3384 1.1486 2.6738 13 7 5.4335 0.4820 2.3771 14 6 5.9430 1.5508 3.2397 15 6 7.2938 1.1330 3.8254 16 6 7.8071 2.2383 4.7536 17 7 7.8405 3.5058 4.0111 18 6 8.9885 4.2500 3.9527 19 1 9.9504 3.7669 4.0409 20 6 8.9158 5.6255 3.7801 21 7 7.7849 6.2586 4.0092 22 14 10.4231 6.5778 3.2226 23 1 10.4469 6.6427 1.7391 24 1 10.3722 7.9543 3.7775 25 1 11.6484 5.8934 3.7078 26 6 6.6152 3.9548 3.3302 27 6 6.1152 2.8304 2.4180 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 2.6136 -3.8449 1.8989 36 1 2.2631 -2.6165 3.1534 37 1 4.5140 -2.7016 1.1358 38 1 4.4990 -2.0068 2.7862 39 1 6.0496 -0.1434 1.9645 40 1 5.2363 1.7317 4.0497 41 1 8.0079 0.9760 3.0171 42 1 7.1754 0.2088 4.3910 43 1 7.1407 2.3345 5.6109 44 1 8.8111 1.9897 5.0975 45 1 7.7342 7.2199 3.8890 46 1 6.8336 4.8400 2.7329 47 1 5.8505 4.1927 4.0698 48 1 6.8404 2.6573 1.6229 49 1 5.1573 3.1143 1.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000617950241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:30 Heat of formation + Delta-G solvation = -80.332897 kcal Electronic energy + Delta-G solvation = -27230.733745 eV Core-core repulsion = 23578.507802 eV Total energy + Delta-G solvation = -3652.225943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74862 -38.85208 -37.22424 -35.27053 -34.40833 -32.83471 -31.83236 -30.05953 -29.46171 -28.61372 -27.10463 -25.26166 -23.76146 -22.60703 -22.24745 -21.67692 -20.38149 -19.97340 -19.23841 -17.48956 -16.73816 -16.40904 -16.08545 -15.84994 -15.20535 -14.70896 -14.48606 -14.01342 -13.81827 -13.78932 -13.62665 -13.51783 -13.31107 -13.02635 -12.70972 -12.53211 -12.37271 -12.12258 -11.99034 -11.56734 -11.52599 -11.38099 -11.14698 -11.05679 -10.93632 -10.79641 -10.76183 -10.73146 -10.41797 -10.24656 -10.09613 -9.98925 -9.77942 -9.76199 -9.42603 -8.74061 -8.44737 -6.71806 -5.80208 -3.22855 2.71016 3.23242 3.36946 3.43533 3.44889 3.65612 4.27762 4.36609 4.47763 4.60328 4.74361 4.89801 4.95785 5.01856 5.12704 5.24800 5.28362 5.38815 5.42515 5.44601 5.49805 5.54998 5.59641 5.62121 5.64081 5.74561 5.79243 5.83650 5.89549 6.03606 6.04437 6.20457 6.21695 6.29051 6.35705 6.40036 6.57192 6.62036 6.64084 6.74110 6.88028 6.91057 7.34832 7.63758 7.68488 7.77659 8.35135 8.42562 9.18562 9.82044 10.38911 11.28425 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.003090 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.750155 B = 9060.266362 C = 9803.558266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.144 4.144 4 C 0.095 3.905 5 H 0.090 0.910 6 O -0.370 6.370 7 C 0.047 3.953 8 C -0.148 4.148 9 C -0.143 4.143 10 H 0.108 0.892 11 C 0.519 3.481 12 O -0.532 6.532 13 N -0.723 5.723 14 C 0.151 3.849 15 C -0.139 4.139 16 C 0.148 3.852 17 N -0.593 5.593 18 C -0.255 4.255 19 H 0.066 0.934 20 C 0.003 3.997 21 N -0.901 5.901 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.173 3.827 27 C -0.145 4.145 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.052 0.948 35 H 0.093 0.907 36 H 0.060 0.940 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.394 0.606 40 H 0.081 0.919 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.020 0.980 44 H 0.058 0.942 45 H 0.254 0.746 46 H 0.090 0.910 47 H 0.021 0.979 48 H 0.054 0.946 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.613 -17.704 -7.129 21.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.104 4.104 3 C -0.201 4.201 4 C 0.037 3.963 5 H 0.107 0.893 6 O -0.289 6.289 7 C -0.030 4.030 8 C -0.186 4.186 9 C -0.165 4.165 10 H 0.126 0.874 11 C 0.305 3.695 12 O -0.408 6.408 13 N -0.373 5.373 14 C 0.048 3.952 15 C -0.179 4.179 16 C 0.021 3.979 17 N -0.316 5.316 18 C -0.384 4.384 19 H 0.084 0.916 20 C -0.196 4.196 21 N -0.545 5.545 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.217 1.217 25 H -0.204 1.204 26 C 0.047 3.953 27 C -0.186 4.186 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.071 0.929 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.102 0.898 38 H 0.101 0.899 39 H 0.227 0.773 40 H 0.099 0.901 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.038 0.962 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.108 0.892 47 H 0.039 0.961 48 H 0.073 0.927 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.357 -17.022 -6.857 21.072 hybrid contribution 1.365 0.291 -0.429 1.460 sum -8.993 -16.731 -7.286 20.344 Atomic orbital electron populations 1.21766 0.94514 1.02036 1.01725 1.21112 0.96679 0.96167 0.96423 1.21821 1.01003 0.94829 1.02485 1.23019 0.90515 0.82707 1.00032 0.89267 1.89115 1.55431 1.19522 1.64800 1.23364 0.87718 0.97712 0.94246 1.22977 0.98965 0.94411 1.02257 1.22778 0.98447 0.94480 1.00773 0.87398 1.20168 0.82697 0.85236 0.81447 1.90707 1.56321 1.43590 1.50222 1.46339 1.06826 1.33385 1.50757 1.21053 0.95273 0.86433 0.92488 1.22333 0.95651 0.99389 1.00490 1.20829 0.98566 0.86325 0.92166 1.44159 1.09763 1.20942 1.56686 1.19182 0.85409 0.88383 1.45453 0.91590 1.25051 0.96952 0.96543 1.01070 1.70035 1.25511 1.08041 1.50906 0.86288 0.82562 0.79294 0.78597 1.21458 1.21744 1.20442 1.20801 0.87005 0.94199 0.93331 1.22546 1.00048 0.96454 0.99515 0.92566 0.92722 0.92183 0.90868 0.92523 0.91340 0.92924 0.88880 0.92123 0.89765 0.89927 0.77255 0.90057 0.91883 0.92698 0.96243 0.92377 0.93561 0.89232 0.96135 0.92741 0.92850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.10 37.16 0.34 -1.08 16 2 C -0.09 -0.91 2.60 -90.62 -0.24 -1.15 16 3 C -0.14 -1.67 8.03 37.16 0.30 -1.37 16 4 C 0.10 1.10 2.20 -25.96 -0.06 1.04 16 5 H 0.09 1.22 6.96 -51.92 -0.36 0.86 16 6 O -0.37 -4.19 10.92 -35.23 -0.38 -4.58 16 7 C 0.05 0.41 7.63 37.94 0.29 0.70 16 8 C -0.15 -1.22 6.67 -25.14 -0.17 -1.39 16 9 C -0.14 -1.50 2.34 -90.19 -0.21 -1.71 16 10 H 0.11 1.01 7.65 -51.93 -0.40 0.61 16 11 C 0.52 7.11 5.91 -10.98 -0.06 7.05 16 12 O -0.53 -9.28 13.94 5.57 0.08 -9.20 16 13 N -0.72 -9.51 4.96 -53.76 -0.27 -9.78 16 14 C 0.15 2.53 2.42 -67.89 -0.16 2.36 16 15 C -0.14 -2.23 5.55 -26.61 -0.15 -2.38 16 16 C 0.15 3.00 6.50 -3.71 -0.02 2.98 16 17 N -0.59 -14.65 3.01 -172.09 -0.52 -15.16 16 18 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16 19 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 20 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 21 N -0.90 -26.19 11.18 55.49 0.62 -25.57 16 22 Si 0.90 21.54 29.59 -169.99 -5.03 16.51 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 C 0.17 4.16 5.33 -3.56 -0.02 4.15 16 27 C -0.15 -2.84 5.65 -26.61 -0.15 -2.99 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.60 7.86 -51.93 -0.41 0.19 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.92 7.71 -51.93 -0.40 0.52 16 34 H 0.05 0.65 6.46 -51.93 -0.34 0.31 16 35 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.68 7.68 -51.93 -0.40 0.28 16 39 H 0.39 4.09 8.59 -40.82 -0.35 3.74 16 40 H 0.08 1.55 7.58 -51.93 -0.39 1.15 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.14 7.93 -51.93 -0.41 0.72 16 45 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.09 2.42 6.04 -51.93 -0.31 2.11 16 47 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 49 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -30.94 375.86 -9.20 -40.14 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -8.82 Total: 2.82 kcal Atomic # 6 Polarization: -0.30 SS G_CDS: -0.55 Total: -0.85 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: -0.16 Total: -50.51 kcal Atomic # 8 Polarization: -13.47 SS G_CDS: -0.31 Total: -13.78 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.94 -9.20 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.194 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds