Wall clock time and date at job start Fri Apr 10 2020 22:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47230 * 2 1 4 4 C 1.53001 * 109.47195 * 120.00216 * 2 1 3 5 5 H 1.09009 * 110.41777 * 302.30716 * 4 2 1 6 6 O 1.44425 * 110.37454 * 64.61754 * 4 2 1 7 7 C 1.44421 * 105.27655 * 159.34788 * 6 4 2 8 8 C 1.54485 * 104.80025 * 319.48887 * 7 6 4 9 9 C 1.54478 * 110.37559 * 180.02562 * 4 2 1 10 10 H 1.09001 * 110.62336 * 335.88856 * 9 4 2 11 11 C 1.50700 * 110.51125 * 98.54026 * 9 4 2 12 12 O 1.21271 * 120.00379 * 356.09899 * 11 9 4 13 13 N 1.34778 * 119.99798 * 176.09996 * 11 9 4 14 14 C 1.46496 * 120.00273 * 180.02562 * 13 11 9 15 15 C 1.53045 * 109.46215 * 154.99748 * 14 13 11 16 16 C 1.53189 * 109.30964 * 181.37334 * 15 14 13 17 17 N 1.46932 * 108.89486 * 305.29189 * 16 15 14 18 18 C 1.36934 * 120.62713 * 233.67791 * 17 16 15 19 19 H 1.07999 * 120.00365 * 27.39524 * 18 17 16 20 20 C 1.38820 * 119.99352 * 207.39446 * 18 17 16 21 21 N 1.31613 * 120.00097 * 17.26040 * 20 18 17 22 22 Si 1.86807 * 119.99669 * 197.26046 * 20 18 17 23 23 H 1.48505 * 109.47107 * 90.00031 * 22 20 18 24 24 H 1.48498 * 109.47190 * 209.99825 * 22 20 18 25 25 H 1.48496 * 109.47303 * 330.00267 * 22 20 18 26 26 C 1.47199 * 118.55133 * 53.54206 * 17 16 15 27 27 C 1.53044 * 109.44899 * 275.05938 * 14 13 11 28 28 H 1.08998 * 109.47250 * 300.00223 * 1 2 3 29 29 H 1.09001 * 109.47254 * 60.00236 * 1 2 3 30 30 H 1.09003 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47250 * 239.99776 * 2 1 3 32 32 H 1.09001 * 109.46810 * 300.00036 * 3 2 1 33 33 H 1.08995 * 109.46703 * 59.99771 * 3 2 1 34 34 H 1.09005 * 109.46918 * 180.02562 * 3 2 1 35 35 H 1.09004 * 110.37312 * 200.66156 * 7 6 4 36 36 H 1.09003 * 110.37532 * 78.31792 * 7 6 4 37 37 H 1.09005 * 110.50895 * 265.33205 * 8 7 6 38 38 H 1.09002 * 110.62615 * 142.68496 * 8 7 6 39 39 H 0.97002 * 120.00140 * 359.97438 * 13 11 9 40 40 H 1.09005 * 109.45832 * 35.02232 * 14 13 11 41 41 H 1.08994 * 109.49759 * 61.42304 * 15 14 13 42 42 H 1.08999 * 109.52410 * 301.33915 * 15 14 13 43 43 H 1.09005 * 109.59042 * 65.15548 * 16 15 14 44 44 H 1.09001 * 109.58782 * 185.43429 * 16 15 14 45 45 H 0.97008 * 119.99917 * 179.97438 * 21 20 18 46 46 H 1.09001 * 109.53355 * 186.67380 * 26 17 16 47 47 H 1.09002 * 109.67913 * 66.37168 * 26 17 16 48 48 H 1.08997 * 109.49664 * 298.57053 * 27 14 13 49 49 H 1.09005 * 109.49458 * 58.66540 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6520 -0.2438 2.1491 6 8 1.6604 -2.1144 1.2157 7 6 2.5698 -2.7784 2.1200 8 6 3.9412 -2.1178 1.8563 9 6 3.5846 -0.7329 1.2706 10 1 3.9833 -0.6310 0.2613 11 6 4.1087 0.3670 2.1576 12 8 3.3384 1.1486 2.6738 13 7 5.4335 0.4820 2.3771 14 6 5.9430 1.5508 3.2397 15 6 7.2938 1.1330 3.8254 16 6 7.8071 2.2383 4.7536 17 7 7.8405 3.5058 4.0111 18 6 8.9885 4.2500 3.9527 19 1 9.9504 3.7669 4.0409 20 6 8.9158 5.6255 3.7801 21 7 7.7849 6.2586 4.0092 22 14 10.4231 6.5778 3.2226 23 1 10.4469 6.6427 1.7391 24 1 10.3722 7.9543 3.7775 25 1 11.6484 5.8934 3.7078 26 6 6.6152 3.9548 3.3302 27 6 6.1152 2.8304 2.4180 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9563 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 2.6136 -3.8449 1.8989 36 1 2.2631 -2.6165 3.1534 37 1 4.5140 -2.7016 1.1358 38 1 4.4990 -2.0068 2.7862 39 1 6.0496 -0.1434 1.9645 40 1 5.2363 1.7317 4.0497 41 1 8.0079 0.9760 3.0171 42 1 7.1754 0.2088 4.3910 43 1 7.1407 2.3345 5.6109 44 1 8.8111 1.9897 5.0975 45 1 7.7342 7.2199 3.8890 46 1 6.8336 4.8400 2.7329 47 1 5.8505 4.1927 4.0698 48 1 6.8404 2.6573 1.6229 49 1 5.1573 3.1143 1.9819 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617950241.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:29 Heat of formation + Delta-G solvation = -100.193639 kcal Electronic energy + Delta-G solvation = -27231.594972 eV Core-core repulsion = 23578.507802 eV Total energy + Delta-G solvation = -3653.087170 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.73740 -40.00514 -38.71633 -36.22917 -35.84203 -34.15103 -33.20669 -31.71908 -31.08596 -29.44114 -27.98620 -27.03367 -24.95650 -23.92364 -23.57372 -22.97508 -21.40280 -21.15647 -20.64396 -18.90141 -18.27480 -17.30676 -17.22340 -16.84861 -16.70247 -16.13241 -15.72245 -15.36949 -15.35808 -14.89115 -14.84884 -14.67581 -14.44079 -14.23722 -14.16818 -14.03169 -13.46173 -13.20030 -13.05340 -13.01217 -12.80570 -12.63008 -12.61141 -12.30458 -12.18539 -12.13290 -12.03305 -11.88415 -11.83910 -11.60744 -11.58750 -11.52387 -11.36607 -10.88448 -10.60147 -10.59368 -9.98940 -8.73608 -7.88411 -5.34219 1.47230 1.48548 1.57602 1.62688 2.12826 2.50849 2.84836 3.27363 3.51412 3.54072 3.62941 3.75000 3.88537 4.03262 4.03889 4.08155 4.11249 4.26932 4.32315 4.36323 4.45557 4.46368 4.65177 4.67195 4.76286 4.78776 4.80492 4.83964 4.86364 4.89643 4.98691 5.02179 5.04788 5.05241 5.07625 5.12292 5.18274 5.30606 5.38095 5.41462 5.45210 5.56644 5.62941 5.68611 5.84418 6.36940 6.60118 7.11832 7.29134 7.82895 8.35897 9.18705 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.024242 B = 0.003090 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.750155 B = 9060.266362 C = 9803.558266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.083 4.083 3 C -0.139 4.139 4 C 0.095 3.905 5 H 0.059 0.941 6 O -0.380 6.380 7 C 0.039 3.961 8 C -0.140 4.140 9 C -0.135 4.135 10 H 0.128 0.872 11 C 0.519 3.481 12 O -0.574 6.574 13 N -0.709 5.709 14 C 0.163 3.837 15 C -0.121 4.121 16 C 0.141 3.859 17 N -0.610 5.610 18 C -0.261 4.261 19 H 0.074 0.926 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.969 3.031 23 H -0.285 1.285 24 H -0.298 1.298 25 H -0.264 1.264 26 C 0.182 3.818 27 C -0.129 4.129 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.044 0.956 35 H 0.119 0.881 36 H 0.053 0.947 37 H 0.114 0.886 38 H 0.085 0.915 39 H 0.414 0.586 40 H 0.056 0.944 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.010 0.990 44 H 0.067 0.933 45 H 0.249 0.751 46 H 0.054 0.946 47 H -0.012 1.012 48 H 0.061 0.939 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.282 -20.795 -8.667 24.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.102 4.102 3 C -0.196 4.196 4 C 0.037 3.963 5 H 0.077 0.923 6 O -0.300 6.300 7 C -0.038 4.038 8 C -0.178 4.178 9 C -0.157 4.157 10 H 0.146 0.854 11 C 0.306 3.694 12 O -0.453 6.453 13 N -0.360 5.360 14 C 0.058 3.942 15 C -0.161 4.161 16 C 0.015 3.985 17 N -0.334 5.334 18 C -0.391 4.391 19 H 0.092 0.908 20 C -0.250 4.250 21 N -0.585 5.585 22 Si 0.797 3.203 23 H -0.212 1.212 24 H -0.225 1.225 25 H -0.189 1.189 26 C 0.055 3.945 27 C -0.169 4.169 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.137 0.863 36 H 0.072 0.928 37 H 0.132 0.868 38 H 0.104 0.896 39 H 0.251 0.749 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.028 0.972 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.073 0.927 47 H 0.006 0.994 48 H 0.079 0.921 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -9.002 -20.186 -8.404 23.646 hybrid contribution 0.889 1.226 0.125 1.519 sum -8.113 -18.960 -8.279 22.223 Atomic orbital electron populations 1.21742 0.94138 1.02087 1.01829 1.21113 0.97059 0.95342 0.96653 1.21758 1.00368 0.95638 1.01833 1.22883 0.91288 0.83012 0.99122 0.92302 1.89106 1.56415 1.19126 1.65319 1.23590 0.87576 0.99009 0.93607 1.23021 0.98893 0.92824 1.03090 1.22760 0.97509 0.94456 1.00970 0.85389 1.20771 0.82302 0.85348 0.81016 1.90710 1.57380 1.45348 1.51876 1.46025 1.07158 1.32620 1.50187 1.20631 0.95471 0.86295 0.91785 1.22128 0.94740 0.98937 1.00249 1.21041 0.99227 0.85681 0.92586 1.44412 1.09100 1.22207 1.57641 1.19579 0.86502 0.88820 1.44203 0.90798 1.25862 0.99661 0.97643 1.01802 1.70210 1.27731 1.07814 1.52701 0.85237 0.79726 0.77422 0.77890 1.21232 1.22509 1.18883 1.20507 0.86376 0.94849 0.92724 1.22280 0.99383 0.96401 0.98829 0.93745 0.91380 0.92092 0.89285 0.91132 0.93979 0.93719 0.86321 0.92837 0.86793 0.89604 0.74912 0.92616 0.90604 0.88968 0.97211 0.91477 0.94207 0.92739 0.99430 0.92063 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.10 71.98 0.65 -2.03 16 2 C -0.08 -1.68 2.60 -10.79 -0.03 -1.71 16 3 C -0.14 -3.18 8.03 71.98 0.58 -2.61 16 4 C 0.10 2.10 2.20 31.10 0.07 2.17 16 5 H 0.06 1.67 6.96 -2.38 -0.02 1.65 16 6 O -0.38 -7.91 10.92 -148.98 -1.63 -9.54 16 7 C 0.04 0.57 7.63 72.49 0.55 1.13 16 8 C -0.14 -1.80 6.67 31.62 0.21 -1.59 16 9 C -0.14 -2.52 2.34 -10.51 -0.02 -2.55 16 10 H 0.13 1.93 7.65 -2.39 -0.02 1.91 16 11 C 0.52 13.58 5.91 87.66 0.52 14.10 16 12 O -0.57 -20.46 13.94 -3.00 -0.04 -20.51 16 13 N -0.71 -16.96 4.96 -442.40 -2.20 -19.16 16 14 C 0.16 5.29 2.42 45.02 0.11 5.40 16 15 C -0.12 -3.56 5.55 30.67 0.17 -3.39 16 16 C 0.14 5.55 6.50 86.36 0.56 6.11 16 17 N -0.61 -30.47 3.01 -698.38 -2.10 -32.57 16 18 C -0.26 -14.18 9.59 84.04 0.81 -13.38 16 19 H 0.07 3.83 7.89 -2.91 -0.02 3.81 16 20 C -0.05 -3.06 4.92 84.86 0.42 -2.64 16 21 N -0.94 -56.69 11.18 21.65 0.24 -56.44 16 22 Si 0.97 44.76 29.59 68.60 2.03 46.79 16 23 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 24 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 26 C 0.18 9.14 5.33 86.31 0.46 9.60 16 27 C -0.13 -5.06 5.65 30.67 0.17 -4.89 16 28 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.15 7.86 -2.39 -0.02 1.13 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.04 1.18 7.71 -2.39 -0.02 1.16 16 34 H 0.04 1.07 6.46 -2.38 -0.02 1.06 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 38 H 0.09 1.08 7.68 -2.39 -0.02 1.06 16 39 H 0.41 6.88 8.59 -92.71 -0.80 6.09 16 40 H 0.06 2.14 7.58 -2.38 -0.02 2.12 16 41 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 43 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 44 H 0.07 2.51 7.93 -2.39 -0.02 2.49 16 45 H 0.25 14.60 8.31 -92.70 -0.77 13.83 16 46 H 0.05 3.10 6.04 -2.39 -0.01 3.09 16 47 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 48 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 49 H 0.05 1.84 8.14 -2.38 -0.02 1.82 16 Total: -1.00 -70.61 375.86 1.66 -68.96 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 0.12 Total: 18.73 kcal Atomic # 6 Polarization: -1.49 SS G_CDS: 5.23 Total: 3.74 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.05 Total: -108.18 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -1.67 Total: -30.04 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -70.61 1.66 -68.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950241.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.237 kcal (2) G-P(sol) polarization free energy of solvation -70.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds