Wall clock time and date at job start Fri Apr 10 2020 22:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47183 * 2 1 4 4 C 1.52999 * 109.47124 * 120.00065 * 2 1 3 5 5 H 1.08997 * 110.41955 * 296.57974 * 4 2 1 6 6 O 1.44424 * 110.37217 * 58.88876 * 4 2 1 7 7 C 1.44423 * 105.27506 * 159.34160 * 6 4 2 8 8 C 1.54484 * 104.80266 * 319.49136 * 7 6 4 9 9 C 1.54477 * 110.37169 * 174.27404 * 4 2 1 10 10 H 1.09000 * 110.63184 * 98.48679 * 9 4 2 11 11 C 1.50707 * 110.51131 * 335.83215 * 9 4 2 12 12 O 1.21284 * 119.99821 * 297.42913 * 11 9 4 13 13 N 1.34772 * 119.99705 * 117.42592 * 11 9 4 14 14 C 1.46504 * 119.99822 * 180.02562 * 13 11 9 15 15 C 1.53041 * 109.46168 * 155.00261 * 14 13 11 16 16 C 1.53186 * 109.31260 * 181.38544 * 15 14 13 17 17 N 1.46928 * 108.77675 * 305.36180 * 16 15 14 18 18 C 1.36940 * 120.63280 * 233.58825 * 17 16 15 19 19 H 1.07999 * 120.00111 * 152.08340 * 18 17 16 20 20 C 1.38814 * 119.99733 * 332.08909 * 18 17 16 21 21 N 1.31619 * 119.99882 * 343.26321 * 20 18 17 22 22 Si 1.86800 * 119.99912 * 163.26799 * 20 18 17 23 23 H 1.48496 * 109.46952 * 179.97438 * 22 20 18 24 24 H 1.48497 * 109.47001 * 299.99858 * 22 20 18 25 25 H 1.48499 * 109.47164 * 59.99544 * 22 20 18 26 26 C 1.46927 * 118.73921 * 53.85918 * 17 16 15 27 27 C 1.53042 * 109.45796 * 275.06855 * 14 13 11 28 28 H 1.09001 * 109.47040 * 299.99849 * 1 2 3 29 29 H 1.09004 * 109.47275 * 59.99501 * 1 2 3 30 30 H 1.08993 * 109.47537 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47040 * 240.00151 * 2 1 3 32 32 H 1.09000 * 109.47209 * 299.99956 * 3 2 1 33 33 H 1.09001 * 109.47010 * 60.00132 * 3 2 1 34 34 H 1.08996 * 109.47091 * 180.02562 * 3 2 1 35 35 H 1.08996 * 110.37534 * 200.66280 * 7 6 4 36 36 H 1.09000 * 110.46514 * 78.36721 * 7 6 4 37 37 H 1.08997 * 110.51211 * 265.33104 * 8 7 6 38 38 H 1.09005 * 110.51083 * 142.62492 * 8 7 6 39 39 H 0.96998 * 120.00743 * 0.02562 * 13 11 9 40 40 H 1.09001 * 109.46071 * 35.02482 * 14 13 11 41 41 H 1.08994 * 109.49881 * 61.42885 * 15 14 13 42 42 H 1.08995 * 109.52200 * 301.35048 * 15 14 13 43 43 H 1.09004 * 109.59067 * 185.57657 * 16 15 14 44 44 H 1.09000 * 109.70711 * 65.21723 * 16 15 14 45 45 H 0.97002 * 119.99924 * 180.02562 * 21 20 18 46 46 H 1.09006 * 109.58366 * 65.93011 * 26 17 16 47 47 H 1.08998 * 109.59192 * 186.35288 * 26 17 16 48 48 H 1.09008 * 109.50037 * 298.56540 * 27 14 13 49 49 H 1.09004 * 109.49937 * 58.63028 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7359 -0.1856 2.1484 6 8 1.5480 -2.0787 1.2821 7 6 2.4436 -2.7867 2.1667 8 6 3.8495 -2.2498 1.8175 9 6 3.5778 -0.8597 1.2001 10 1 4.0529 -0.0787 1.7937 11 6 4.0672 -0.8099 -0.2244 12 8 3.7233 -1.6639 -1.0140 13 7 4.8870 0.1836 -0.6209 14 6 5.3624 0.2324 -2.0058 15 6 5.7176 1.6751 -2.3724 16 6 6.1813 1.7276 -3.8315 17 7 7.2813 0.7706 -4.0128 18 6 8.4749 1.1731 -4.5501 19 1 9.3866 0.6571 -4.2876 20 6 8.5128 2.2444 -5.4321 21 7 7.4055 2.6623 -6.0079 22 14 10.1355 3.0928 -5.8017 23 1 9.9076 4.1977 -6.7673 24 1 10.7042 3.6425 -4.5449 25 1 11.0847 2.1122 -6.3871 26 6 7.0744 -0.6278 -3.6123 27 6 6.6025 -0.6526 -2.1506 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 -0.0005 35 1 2.3905 -3.8595 1.9815 36 1 2.2022 -2.5695 3.2072 37 1 4.3378 -2.9009 1.0925 38 1 4.4569 -2.1558 2.7177 39 1 5.1623 0.8665 0.0107 40 1 4.5787 -0.1291 -2.6716 41 1 6.5185 2.0288 -1.7232 42 1 4.8403 2.3095 -2.2465 43 1 6.5290 2.7331 -4.0686 44 1 5.3540 1.4623 -4.4898 45 1 7.4321 3.4107 -6.6245 46 1 6.3174 -1.0827 -4.2513 47 1 8.0114 -1.1769 -3.7047 48 1 7.3952 -0.2770 -1.5034 49 1 6.3548 -1.6754 -1.8663 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000617950242.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:31 Heat of formation + Delta-G solvation = -92.949596 kcal Electronic energy + Delta-G solvation = -27591.514182 eV Core-core repulsion = 23938.741138 eV Total energy + Delta-G solvation = -3652.773045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87746 -39.91157 -38.63301 -36.09165 -35.94522 -34.02970 -33.19741 -31.76972 -31.14575 -29.41878 -27.96296 -27.01869 -24.93639 -23.96413 -23.67229 -22.66258 -21.85758 -21.13579 -20.37273 -18.83103 -18.10914 -17.55282 -17.18169 -16.82319 -16.59359 -16.23716 -15.83790 -15.55770 -15.36648 -14.90477 -14.66278 -14.56850 -14.38945 -14.30044 -14.10277 -13.77763 -13.26828 -13.14792 -13.04502 -12.97186 -12.82060 -12.57136 -12.57089 -12.53651 -12.24931 -12.13265 -12.04319 -11.91707 -11.82530 -11.70188 -11.52060 -11.49552 -11.34809 -10.79142 -10.55805 -10.54243 -9.92103 -8.72154 -7.88447 -5.34849 1.48734 1.50174 1.57696 1.64554 2.18467 2.51532 2.92861 3.27152 3.43775 3.61597 3.65330 3.80932 3.93517 4.02148 4.06573 4.08263 4.20549 4.30791 4.32182 4.35507 4.42502 4.44909 4.62051 4.64890 4.74437 4.77126 4.80378 4.83371 4.86293 4.89162 4.96770 5.00898 5.03105 5.04196 5.09592 5.14308 5.24281 5.27683 5.40225 5.40598 5.46216 5.57872 5.63227 5.70486 5.96039 6.37710 6.64717 7.13378 7.34545 7.82648 8.35803 9.18243 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.026759 B = 0.003196 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.132222 B = 8759.038281 C = 9312.428852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 C -0.149 4.149 4 C 0.101 3.899 5 H 0.108 0.892 6 O -0.391 6.391 7 C 0.043 3.957 8 C -0.138 4.138 9 C -0.139 4.139 10 H 0.137 0.863 11 C 0.525 3.475 12 O -0.579 6.579 13 N -0.709 5.709 14 C 0.165 3.835 15 C -0.126 4.126 16 C 0.179 3.821 17 N -0.608 5.608 18 C -0.267 4.267 19 H 0.068 0.932 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.970 3.030 23 H -0.294 1.294 24 H -0.274 1.274 25 H -0.278 1.278 26 C 0.144 3.856 27 C -0.122 4.122 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.117 0.883 39 H 0.413 0.587 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.064 0.936 44 H -0.010 1.010 45 H 0.251 0.749 46 H 0.003 0.997 47 H 0.057 0.943 48 H 0.068 0.932 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.809 -3.267 22.262 24.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.129 4.129 3 C -0.206 4.206 4 C 0.043 3.957 5 H 0.125 0.875 6 O -0.311 6.311 7 C -0.033 4.033 8 C -0.176 4.176 9 C -0.161 4.161 10 H 0.155 0.845 11 C 0.313 3.687 12 O -0.458 6.458 13 N -0.361 5.361 14 C 0.060 3.940 15 C -0.166 4.166 16 C 0.052 3.948 17 N -0.332 5.332 18 C -0.397 4.397 19 H 0.085 0.915 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.798 3.202 23 H -0.220 1.220 24 H -0.200 1.200 25 H -0.204 1.204 26 C 0.018 3.982 27 C -0.162 4.162 28 H 0.091 0.909 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.076 0.924 38 H 0.135 0.865 39 H 0.250 0.750 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.009 0.991 45 H 0.060 0.940 46 H 0.021 0.979 47 H 0.075 0.925 48 H 0.087 0.913 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.243 -3.836 21.464 24.090 hybrid contribution 1.014 0.537 -0.883 1.448 sum -9.229 -3.299 20.580 22.795 Atomic orbital electron populations 1.21669 0.93936 1.01475 1.02190 1.21377 0.97550 0.96836 0.97141 1.21926 1.01742 0.93934 1.03013 1.23032 0.89305 0.84393 0.98993 0.87462 1.89158 1.52124 1.21815 1.67964 1.23561 0.87331 0.97770 0.94683 1.22946 0.99141 0.93531 1.01962 1.22913 0.98546 1.01887 0.92711 0.84486 1.20786 0.77042 0.80360 0.90530 1.90710 1.58564 1.40264 1.56276 1.46214 1.48852 1.28898 1.12154 1.20567 0.94778 0.96080 0.82588 1.22230 1.01119 0.94597 0.98646 1.20566 0.88253 0.94764 0.91178 1.44355 1.12687 1.03855 1.72284 1.19505 0.86191 1.14268 1.19770 0.91476 1.25830 1.00083 1.02031 0.96451 1.70181 1.28322 1.28703 1.30920 0.85303 0.79533 0.77838 0.77521 1.22034 1.19970 1.20393 1.21047 0.97936 0.86137 0.93107 1.22226 0.97461 0.98913 0.97628 0.90920 0.92962 0.93587 0.93093 0.92898 0.89981 0.91974 0.89216 0.89298 0.92418 0.86499 0.74996 0.93095 0.90973 0.90475 0.91759 0.99140 0.93987 0.97887 0.92475 0.91301 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.05 71.98 0.65 -2.13 16 2 C -0.11 -2.48 2.22 -10.79 -0.02 -2.50 16 3 C -0.15 -2.67 8.88 71.98 0.64 -2.03 16 4 C 0.10 1.89 2.68 31.10 0.08 1.98 16 5 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 6 O -0.39 -9.28 10.68 -148.98 -1.59 -10.87 16 7 C 0.04 0.70 7.63 72.49 0.55 1.25 16 8 C -0.14 -2.24 6.62 31.61 0.21 -2.03 16 9 C -0.14 -2.45 2.91 -10.52 -0.03 -2.48 16 10 H 0.14 1.32 7.97 -2.39 -0.02 1.30 16 11 C 0.52 14.00 4.20 87.66 0.37 14.37 16 12 O -0.58 -21.59 14.89 -3.04 -0.05 -21.64 16 13 N -0.71 -17.53 3.83 -442.39 -1.70 -19.23 16 14 C 0.16 5.53 2.41 45.02 0.11 5.64 16 15 C -0.13 -4.41 5.55 30.67 0.17 -4.24 16 16 C 0.18 8.54 5.30 86.36 0.46 9.00 16 17 N -0.61 -30.89 2.99 -698.24 -2.09 -32.98 16 18 C -0.27 -14.72 9.59 84.03 0.81 -13.91 16 19 H 0.07 3.59 7.88 -2.91 -0.02 3.57 16 20 C -0.05 -2.69 4.92 84.86 0.42 -2.27 16 21 N -0.94 -55.19 11.16 21.65 0.24 -54.94 16 22 Si 0.97 44.33 29.59 68.60 2.03 46.36 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 24 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 C 0.14 6.35 6.54 86.51 0.57 6.91 16 27 C -0.12 -4.38 5.67 30.82 0.17 -4.20 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.06 8.14 -2.38 -0.02 1.04 16 30 H 0.04 1.07 7.69 -2.39 -0.02 1.05 16 31 H 0.05 1.61 5.79 -2.39 -0.01 1.60 16 32 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.06 1.08 5.01 -2.39 -0.01 1.07 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 36 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.06 1.28 7.48 -2.39 -0.02 1.26 16 38 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.41 7.26 8.07 -92.71 -0.75 6.51 16 40 H 0.05 2.05 7.58 -2.39 -0.02 2.04 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.36 16 42 H 0.08 2.34 8.14 -2.39 -0.02 2.33 16 43 H 0.06 3.43 6.03 -2.38 -0.01 3.41 16 44 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.00 0.15 8.14 -2.38 -0.02 0.13 16 47 H 0.06 2.45 7.93 -2.39 -0.02 2.43 16 48 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 49 H 0.06 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -72.56 372.39 2.18 -70.38 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: 0.17 Total: 19.55 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.15 Total: 3.37 kcal Atomic # 7 Polarization: -103.61 SS G_CDS: -3.54 Total: -107.15 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.64 Total: -32.51 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -72.56 2.18 -70.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000617950242.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.572 kcal (2) G-P(sol) polarization free energy of solvation -72.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.378 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds