Wall clock time and date at job start Fri Apr 10 2020 22:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.52998 * 109.47046 * 119.99958 * 2 1 3 5 5 N 1.46503 * 109.46882 * 174.12672 * 4 2 1 6 6 C 1.46506 * 119.99728 * 276.69999 * 5 4 2 7 7 C 1.50691 * 109.46950 * 270.00006 * 6 5 4 8 8 H 1.08001 * 120.00561 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99750 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99693 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47295 * 59.99635 * 11 9 7 13 13 H 1.48503 * 109.46820 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47195 * 299.99393 * 11 9 7 15 15 C 1.34771 * 120.00278 * 96.70075 * 5 4 2 16 16 O 1.21275 * 120.00373 * 185.38485 * 15 5 4 17 17 C 1.50709 * 120.00099 * 5.38581 * 15 5 4 18 18 N 1.46491 * 109.47287 * 174.50153 * 17 15 5 19 19 C 1.47196 * 119.78707 * 269.99941 * 18 17 15 20 20 C 1.52987 * 108.66219 * 108.04392 * 19 18 17 21 21 C 1.51776 * 110.88200 * 86.46912 * 20 19 18 22 22 C 1.51786 * 113.81254 * 292.99456 * 21 20 19 23 23 C 1.53062 * 110.74324 * 66.80645 * 22 21 20 24 24 C 1.33373 * 119.79045 * 90.00274 * 18 17 15 25 25 O 1.21279 * 119.88730 * 0.55362 * 24 18 17 26 26 H 1.08999 * 109.46920 * 299.99873 * 1 2 3 27 27 H 1.09002 * 109.46835 * 60.00293 * 1 2 3 28 28 H 1.08995 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 240.00127 * 2 1 3 30 30 H 1.09002 * 109.47062 * 304.70809 * 3 2 1 31 31 H 1.08994 * 109.47370 * 64.70913 * 3 2 1 32 32 H 1.08999 * 109.46874 * 184.71075 * 3 2 1 33 33 H 1.08992 * 109.47186 * 54.12698 * 4 2 1 34 34 H 1.08997 * 109.46940 * 294.11966 * 4 2 1 35 35 H 1.09001 * 109.46854 * 30.00370 * 6 5 4 36 36 H 1.08998 * 109.46573 * 149.99918 * 6 5 4 37 37 H 0.96998 * 119.99992 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46724 * 54.49796 * 17 15 5 39 39 H 1.09003 * 109.46621 * 294.50229 * 17 15 5 40 40 H 1.08998 * 109.60280 * 348.28937 * 19 18 17 41 41 H 1.09005 * 109.60639 * 227.79529 * 19 18 17 42 42 H 1.08994 * 109.19677 * 326.10426 * 20 19 18 43 43 H 1.09004 * 109.15554 * 206.80268 * 20 19 18 44 44 H 1.09002 * 108.61691 * 171.87425 * 21 20 19 45 45 H 1.09002 * 108.61802 * 54.11337 * 21 20 19 46 46 H 1.09004 * 109.22432 * 306.47916 * 22 21 20 47 47 H 1.09007 * 109.22458 * 187.13660 * 22 21 20 48 48 H 1.09005 * 109.62837 * 155.38721 * 23 22 21 49 49 H 1.09000 * 109.79774 * 34.88726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4983 -0.8448 1.1806 6 6 4.1055 -1.9441 0.4261 7 6 4.3000 -3.1300 1.3353 8 1 4.0017 -3.0708 2.3716 9 6 4.8600 -4.2905 0.8443 10 7 5.2238 -4.3625 -0.4174 11 14 5.1005 -5.7608 1.9712 12 1 3.7850 -6.1953 2.5056 13 1 5.7172 -6.8746 1.2068 14 1 5.9913 -5.3811 3.0971 15 6 4.2811 0.0526 1.8115 16 8 5.4854 0.0087 1.6752 17 6 3.6600 1.1109 2.6865 18 7 4.7168 1.8726 3.3566 19 6 5.2181 1.4298 4.6679 20 6 6.6244 0.8557 4.4859 21 6 7.6703 1.9532 4.5581 22 6 7.6082 2.9359 3.4029 23 6 6.3155 3.7537 3.4557 24 6 5.2185 2.9628 2.7748 25 8 4.7913 3.3246 1.6989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6095 1.9801 -0.8448 31 1 1.7473 1.9314 0.9291 32 1 3.1268 1.4437 -0.0844 33 1 1.5934 -1.7140 1.3034 34 1 1.7652 -0.1502 2.1360 35 1 3.4511 -2.2229 -0.3998 36 1 5.0709 -1.6252 0.0332 37 1 5.6173 -5.1790 -0.7628 38 1 3.0239 0.6369 3.4340 39 1 3.0605 1.7836 2.0731 40 1 4.5586 0.6613 5.0710 41 1 5.2550 2.2785 5.3509 42 1 6.6878 0.3635 3.5155 43 1 6.8169 0.1250 5.2715 44 1 8.6580 1.4924 4.5702 45 1 7.5346 2.5025 5.4898 46 1 7.6473 2.3867 2.4621 47 1 8.4625 3.6106 3.4594 48 1 6.4602 4.7012 2.9365 49 1 6.0405 3.9429 4.4933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701277215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:35 Heat of formation + Delta-G solvation = -85.597957 kcal Electronic energy + Delta-G solvation = -28078.770476 eV Core-core repulsion = 24426.316222 eV Total energy + Delta-G solvation = -3652.454254 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.46425 -38.81647 -36.55549 -36.18718 -34.50211 -33.55858 -32.25879 -30.95976 -29.27906 -27.33812 -26.90825 -25.87549 -25.20495 -23.83254 -22.57594 -20.53074 -20.16310 -19.14033 -18.10890 -17.18022 -16.67113 -16.46129 -16.38801 -15.16913 -14.87878 -14.76792 -14.43603 -14.15789 -14.05168 -13.73722 -13.51163 -13.42930 -13.16143 -13.01230 -12.57524 -12.46403 -12.20599 -12.07928 -12.04500 -11.72578 -11.50290 -11.35086 -11.20179 -10.96439 -10.87623 -10.74793 -10.67033 -10.60112 -10.55608 -10.51065 -10.33941 -10.11480 -9.62413 -9.49906 -9.23928 -8.43352 -8.30468 -7.58796 -6.03832 -4.09003 2.80898 3.12241 3.29743 3.34653 3.35978 3.46283 4.04845 4.44106 4.54939 4.77033 4.82897 4.86063 5.07254 5.09957 5.20441 5.27325 5.29974 5.32185 5.36905 5.40138 5.45956 5.51151 5.61934 5.67910 5.69725 5.78500 5.81315 5.91954 5.98516 6.00851 6.07277 6.12924 6.13978 6.26627 6.27085 6.34177 6.49024 6.60063 6.62158 6.67106 7.11504 7.49240 7.55960 7.58876 7.92903 8.24676 8.36687 8.48171 8.90705 9.13609 9.55946 11.04009 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.005542 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.272192 B = 5051.281878 C = 6910.996178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.118 4.118 3 C -0.145 4.145 4 C 0.116 3.884 5 N -0.595 5.595 6 C 0.248 3.752 7 C -0.526 4.526 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.496 3.504 16 O -0.532 6.532 17 C 0.080 3.920 18 N -0.588 5.588 19 C 0.116 3.884 20 C -0.156 4.156 21 C -0.114 4.114 22 C -0.114 4.114 23 C -0.133 4.133 24 C 0.521 3.479 25 O -0.549 6.549 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.060 0.940 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.031 0.969 36 H 0.043 0.957 37 H 0.263 0.737 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.093 0.907 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 13.672 10.506 17.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.137 4.137 3 C -0.202 4.202 4 C -0.009 4.009 5 N -0.327 5.327 6 C 0.129 3.871 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.281 3.719 16 O -0.409 6.409 17 C -0.046 4.046 18 N -0.320 5.320 19 C -0.007 4.007 20 C -0.194 4.194 21 C -0.152 4.152 22 C -0.152 4.152 23 C -0.173 4.173 24 C 0.309 3.691 25 O -0.427 6.427 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.099 0.901 34 H 0.082 0.918 35 H 0.049 0.951 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.101 0.899 41 H 0.092 0.908 42 H 0.119 0.881 43 H 0.089 0.911 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.111 0.889 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -3.824 13.694 9.728 17.227 hybrid contribution 0.113 -1.119 0.616 1.282 sum -3.711 12.575 10.344 16.700 Atomic orbital electron populations 1.21760 0.95071 1.01728 1.01385 1.21589 0.95361 0.96714 1.00081 1.21927 1.01940 0.95486 1.00887 1.21548 0.81831 1.01016 0.96485 1.48174 1.05162 1.28034 1.51368 1.19221 0.94474 0.82442 0.90964 1.21380 1.41186 0.97321 0.96594 0.92648 1.24931 0.95305 0.98678 0.95128 1.69925 1.41897 1.27939 1.13464 0.86589 0.78359 0.81938 0.80678 1.20269 1.21193 1.20290 1.20629 0.87682 0.82282 0.81275 1.90601 1.14424 1.73006 1.62844 1.21807 0.90468 0.94839 0.97517 1.47440 1.38328 1.25995 1.20220 1.21825 0.95938 0.99507 0.83423 1.21962 0.93572 0.98314 1.05561 1.21100 0.99648 0.96652 0.97760 1.21223 0.95709 0.97842 1.00459 1.21953 0.94368 0.99234 1.01769 1.20446 0.82658 0.80607 0.85371 1.90691 1.60781 1.69682 1.21548 0.92927 0.92830 0.92495 0.90412 0.93001 0.93072 0.92109 0.90130 0.91819 0.95139 0.93932 0.92684 0.88600 0.86728 0.89929 0.90776 0.88077 0.91131 0.91890 0.92545 0.90815 0.91118 0.88877 0.89650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 2 C -0.12 -1.74 3.11 -90.62 -0.28 -2.02 16 3 C -0.15 -2.15 7.59 37.16 0.28 -1.87 16 4 C 0.12 1.88 4.89 -4.04 -0.02 1.86 16 5 N -0.60 -12.54 2.26 -175.06 -0.40 -12.94 16 6 C 0.25 6.50 5.22 -5.19 -0.03 6.47 16 7 C -0.53 -14.69 9.39 -34.44 -0.32 -15.02 16 8 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 9 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 10 N -0.89 -26.59 13.29 55.43 0.74 -25.85 16 11 Si 0.90 21.63 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 15 C 0.50 10.37 6.51 -10.98 -0.07 10.30 16 16 O -0.53 -13.24 13.94 5.56 0.08 -13.17 16 17 C 0.08 1.27 4.23 -5.19 -0.02 1.25 16 18 N -0.59 -8.77 1.97 -174.60 -0.34 -9.11 16 19 C 0.12 1.35 5.91 -3.67 -0.02 1.32 16 20 C -0.16 -2.04 5.73 -27.36 -0.16 -2.20 16 21 C -0.11 -1.23 5.27 -27.97 -0.15 -1.38 16 22 C -0.11 -1.35 5.67 -27.32 -0.15 -1.50 16 23 C -0.13 -1.55 5.56 -27.50 -0.15 -1.70 16 24 C 0.52 8.33 6.74 -11.26 -0.08 8.25 16 25 O -0.55 -10.87 16.60 5.56 0.09 -10.78 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.31 8.01 -51.93 -0.42 0.90 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.68 6.49 -51.93 -0.34 0.35 16 32 H 0.06 1.11 6.87 -51.93 -0.36 0.75 16 33 H 0.08 1.35 8.12 -51.93 -0.42 0.93 16 34 H 0.06 0.85 6.09 -51.93 -0.32 0.53 16 35 H 0.03 0.82 7.94 -51.93 -0.41 0.40 16 36 H 0.04 1.28 7.35 -51.93 -0.38 0.90 16 37 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.10 1.24 7.06 -51.93 -0.37 0.87 16 39 H 0.12 1.80 4.03 -51.93 -0.21 1.59 16 40 H 0.08 0.88 7.77 -51.93 -0.40 0.47 16 41 H 0.07 0.65 6.71 -51.93 -0.35 0.30 16 42 H 0.10 1.83 5.93 -51.93 -0.31 1.52 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.48 7.89 -51.93 -0.41 0.07 16 46 H 0.07 1.13 7.86 -51.93 -0.41 0.72 16 47 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 48 H 0.09 1.02 8.13 -51.93 -0.42 0.60 16 49 H 0.09 0.76 6.79 -51.93 -0.35 0.41 16 LS Contribution 375.56 15.07 5.66 5.66 Total: -1.00 -34.56 375.56 -8.50 -43.06 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.37 Total: 2.41 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: -0.93 Total: 4.12 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.00 Total: -47.90 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: 0.17 Total: -23.95 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.56 -8.50 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.540 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds