Wall clock time and date at job start Fri Apr 10 2020 22:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 109.46941 * 2 1 4 4 C 1.52998 * 109.47046 * 119.99958 * 2 1 3 5 5 N 1.46503 * 109.46882 * 174.12672 * 4 2 1 6 6 C 1.46506 * 119.99728 * 276.69999 * 5 4 2 7 7 C 1.50691 * 109.46950 * 270.00006 * 6 5 4 8 8 H 1.08001 * 120.00561 * 359.97438 * 7 6 5 9 9 C 1.37884 * 119.99750 * 180.02562 * 7 6 5 10 10 N 1.31512 * 120.00178 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99693 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47295 * 59.99635 * 11 9 7 13 13 H 1.48503 * 109.46820 * 180.02562 * 11 9 7 14 14 H 1.48502 * 109.47195 * 299.99393 * 11 9 7 15 15 C 1.34771 * 120.00278 * 96.70075 * 5 4 2 16 16 O 1.21275 * 120.00373 * 185.38485 * 15 5 4 17 17 C 1.50709 * 120.00099 * 5.38581 * 15 5 4 18 18 N 1.46491 * 109.47287 * 174.50153 * 17 15 5 19 19 C 1.47196 * 119.78707 * 269.99941 * 18 17 15 20 20 C 1.52987 * 108.66219 * 108.04392 * 19 18 17 21 21 C 1.51776 * 110.88200 * 86.46912 * 20 19 18 22 22 C 1.51786 * 113.81254 * 292.99456 * 21 20 19 23 23 C 1.53062 * 110.74324 * 66.80645 * 22 21 20 24 24 C 1.33373 * 119.79045 * 90.00274 * 18 17 15 25 25 O 1.21279 * 119.88730 * 0.55362 * 24 18 17 26 26 H 1.08999 * 109.46920 * 299.99873 * 1 2 3 27 27 H 1.09002 * 109.46835 * 60.00293 * 1 2 3 28 28 H 1.08995 * 109.46799 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46920 * 240.00127 * 2 1 3 30 30 H 1.09002 * 109.47062 * 304.70809 * 3 2 1 31 31 H 1.08994 * 109.47370 * 64.70913 * 3 2 1 32 32 H 1.08999 * 109.46874 * 184.71075 * 3 2 1 33 33 H 1.08992 * 109.47186 * 54.12698 * 4 2 1 34 34 H 1.08997 * 109.46940 * 294.11966 * 4 2 1 35 35 H 1.09001 * 109.46854 * 30.00370 * 6 5 4 36 36 H 1.08998 * 109.46573 * 149.99918 * 6 5 4 37 37 H 0.96998 * 119.99992 * 180.02562 * 10 9 7 38 38 H 1.09001 * 109.46724 * 54.49796 * 17 15 5 39 39 H 1.09003 * 109.46621 * 294.50229 * 17 15 5 40 40 H 1.08998 * 109.60280 * 348.28937 * 19 18 17 41 41 H 1.09005 * 109.60639 * 227.79529 * 19 18 17 42 42 H 1.08994 * 109.19677 * 326.10426 * 20 19 18 43 43 H 1.09004 * 109.15554 * 206.80268 * 20 19 18 44 44 H 1.09002 * 108.61691 * 171.87425 * 21 20 19 45 45 H 1.09002 * 108.61802 * 54.11337 * 21 20 19 46 46 H 1.09004 * 109.22432 * 306.47916 * 22 21 20 47 47 H 1.09007 * 109.22458 * 187.13660 * 22 21 20 48 48 H 1.09005 * 109.62837 * 155.38721 * 23 22 21 49 49 H 1.09000 * 109.79774 * 34.88726 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 7 3.4983 -0.8448 1.1806 6 6 4.1055 -1.9441 0.4261 7 6 4.3000 -3.1300 1.3353 8 1 4.0017 -3.0708 2.3716 9 6 4.8600 -4.2905 0.8443 10 7 5.2238 -4.3625 -0.4174 11 14 5.1005 -5.7608 1.9712 12 1 3.7850 -6.1953 2.5056 13 1 5.7172 -6.8746 1.2068 14 1 5.9913 -5.3811 3.0971 15 6 4.2811 0.0526 1.8115 16 8 5.4854 0.0087 1.6752 17 6 3.6600 1.1109 2.6865 18 7 4.7168 1.8726 3.3566 19 6 5.2181 1.4298 4.6679 20 6 6.6244 0.8557 4.4859 21 6 7.6703 1.9532 4.5581 22 6 7.6082 2.9359 3.4029 23 6 6.3155 3.7537 3.4557 24 6 5.2185 2.9628 2.7748 25 8 4.7913 3.3246 1.6989 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 1.6095 1.9801 -0.8448 31 1 1.7473 1.9314 0.9291 32 1 3.1268 1.4437 -0.0844 33 1 1.5934 -1.7140 1.3034 34 1 1.7652 -0.1502 2.1360 35 1 3.4511 -2.2229 -0.3998 36 1 5.0709 -1.6252 0.0332 37 1 5.6173 -5.1790 -0.7628 38 1 3.0239 0.6369 3.4340 39 1 3.0605 1.7836 2.0731 40 1 4.5586 0.6613 5.0710 41 1 5.2550 2.2785 5.3509 42 1 6.6878 0.3635 3.5155 43 1 6.8169 0.1250 5.2715 44 1 8.6580 1.4924 4.5702 45 1 7.5346 2.5025 5.4898 46 1 7.6473 2.3867 2.4621 47 1 8.4625 3.6106 3.4594 48 1 6.4602 4.7012 2.9365 49 1 6.0405 3.9429 4.4933 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000701277215.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:34 Heat of formation + Delta-G solvation = -107.552673 kcal Electronic energy + Delta-G solvation = -28079.722504 eV Core-core repulsion = 24426.316222 eV Total energy + Delta-G solvation = -3653.406281 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.73950 -40.33846 -37.82721 -37.55018 -35.77684 -35.28465 -34.13356 -31.99336 -30.77697 -29.04964 -28.02815 -27.05010 -26.67735 -25.06826 -24.36262 -21.48508 -21.46524 -20.49601 -19.48047 -18.62122 -18.33927 -18.10816 -17.74872 -16.89734 -16.32419 -16.06905 -15.99905 -15.54770 -15.15459 -14.98940 -14.57973 -14.52751 -14.46750 -14.31102 -14.27327 -13.82196 -13.61455 -13.33561 -13.27165 -13.12382 -12.90562 -12.81604 -12.63055 -12.57750 -12.38377 -12.24600 -12.10085 -11.86314 -11.72526 -11.66071 -11.60533 -11.55059 -11.45592 -10.78629 -10.73298 -10.65430 -9.66605 -9.38124 -8.22643 -6.38679 1.35281 1.39822 1.47186 1.56778 1.81946 2.02149 2.33228 2.53144 3.06501 3.51741 3.68874 3.85837 3.89119 3.92936 3.97223 4.01290 4.16047 4.21896 4.28347 4.36208 4.48099 4.49377 4.56176 4.57382 4.68584 4.76632 4.82724 4.87680 4.89857 4.96651 5.00810 5.04062 5.07061 5.09772 5.20922 5.25718 5.28394 5.29809 5.37744 5.42270 5.48627 5.55517 5.60991 5.86738 6.05161 6.43136 6.68965 6.78841 7.19179 7.27695 7.49698 8.84491 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.010832 B = 0.005542 C = 0.004051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2584.272192 B = 5051.281878 C = 6910.996178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.114 4.114 3 C -0.136 4.136 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.267 3.733 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.971 3.029 12 H -0.257 1.257 13 H -0.282 1.282 14 H -0.275 1.275 15 C 0.486 3.514 16 O -0.584 6.584 17 C 0.089 3.911 18 N -0.589 5.589 19 C 0.111 3.889 20 C -0.158 4.158 21 C -0.111 4.111 22 C -0.112 4.112 23 C -0.124 4.124 24 C 0.507 3.493 25 O -0.600 6.600 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.015 0.985 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.014 0.986 36 H -0.013 1.013 37 H 0.266 0.734 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.021 0.979 47 H 0.098 0.902 48 H 0.098 0.902 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 14.725 14.542 21.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.134 4.134 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.331 5.331 6 C 0.146 3.854 7 C -0.577 4.577 8 H 0.077 0.923 9 C -0.194 4.194 10 N -0.572 5.572 11 Si 0.795 3.205 12 H -0.181 1.181 13 H -0.207 1.207 14 H -0.200 1.200 15 C 0.274 3.726 16 O -0.464 6.464 17 C -0.038 4.038 18 N -0.319 5.319 19 C -0.010 4.010 20 C -0.196 4.196 21 C -0.148 4.148 22 C -0.149 4.149 23 C -0.163 4.163 24 C 0.297 3.703 25 O -0.481 6.481 26 H 0.096 0.904 27 H 0.082 0.918 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.034 0.966 33 H 0.094 0.906 34 H 0.123 0.877 35 H 0.032 0.968 36 H 0.005 0.995 37 H 0.075 0.925 38 H 0.154 0.846 39 H 0.136 0.864 40 H 0.115 0.885 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.117 0.883 46 H 0.040 0.960 47 H 0.116 0.884 48 H 0.117 0.883 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -5.608 14.756 13.804 20.970 hybrid contribution 0.708 -1.435 -0.720 1.755 sum -4.901 13.321 13.084 19.305 Atomic orbital electron populations 1.21698 0.91684 1.02499 1.03161 1.21533 0.98007 0.95951 0.97873 1.21840 0.98954 0.95901 1.02635 1.21878 0.78577 1.01789 0.98955 1.48164 1.07438 1.26869 1.50668 1.18599 0.91851 0.83904 0.91075 1.21649 1.41309 0.97934 0.96771 0.92274 1.25934 0.94687 1.02047 0.96717 1.70079 1.42621 1.28913 1.15564 0.85424 0.79072 0.77743 0.78305 1.18136 1.20700 1.20030 1.21677 0.87187 0.82697 0.81075 1.90592 1.16908 1.74415 1.64483 1.21794 0.90923 0.93337 0.97714 1.47656 1.37876 1.25231 1.21108 1.22167 0.94839 1.01675 0.82363 1.21933 0.95794 0.99288 1.02584 1.21098 0.98710 0.96049 0.98979 1.21216 0.97083 0.98193 0.98451 1.22001 0.92175 0.98369 1.03771 1.21372 0.82936 0.80991 0.84983 1.90660 1.62505 1.71183 1.23780 0.90377 0.91833 0.92259 0.93843 0.91716 0.90839 0.96559 0.90556 0.87749 0.96775 0.99506 0.92518 0.84558 0.86351 0.88540 0.86268 0.94003 0.89887 0.92220 0.88314 0.96005 0.88392 0.88341 0.85360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.77 9.19 71.99 0.66 -2.11 16 2 C -0.11 -3.37 3.11 -10.79 -0.03 -3.40 16 3 C -0.14 -4.05 7.59 71.98 0.55 -3.50 16 4 C 0.11 3.55 4.89 86.38 0.42 3.98 16 5 N -0.60 -26.52 2.26 -826.17 -1.87 -28.38 16 6 C 0.27 15.07 5.22 85.63 0.45 15.52 16 7 C -0.54 -31.23 9.39 25.60 0.24 -30.99 16 8 H 0.06 3.31 7.81 -2.91 -0.02 3.28 16 9 C 0.00 0.28 5.46 84.66 0.46 0.74 16 10 N -0.93 -57.90 13.29 21.45 0.28 -57.62 16 11 Si 0.97 44.86 29.54 68.60 2.03 46.89 16 12 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 14 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.49 21.24 6.51 87.66 0.57 21.81 16 16 O -0.58 -31.48 13.94 -3.01 -0.04 -31.52 16 17 C 0.09 2.74 4.23 85.64 0.36 3.10 16 18 N -0.59 -16.80 1.97 -825.49 -1.63 -18.43 16 19 C 0.11 2.23 5.91 86.24 0.51 2.74 16 20 C -0.16 -3.97 5.73 30.19 0.17 -3.79 16 21 C -0.11 -2.16 5.27 29.79 0.16 -2.00 16 22 C -0.11 -2.52 5.67 30.22 0.17 -2.35 16 23 C -0.12 -2.59 5.56 30.10 0.17 -2.42 16 24 C 0.51 15.97 6.74 88.10 0.59 16.57 16 25 O -0.60 -24.44 16.60 -3.03 -0.05 -24.49 16 26 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.04 1.56 8.01 -2.39 -0.02 1.55 16 30 H 0.06 1.72 8.14 -2.39 -0.02 1.71 16 31 H 0.07 1.83 6.49 -2.39 -0.02 1.82 16 32 H 0.02 0.60 6.87 -2.39 -0.02 0.59 16 33 H 0.08 2.53 8.12 -2.39 -0.02 2.51 16 34 H 0.10 2.49 6.09 -2.39 -0.01 2.48 16 35 H 0.01 0.83 7.94 -2.39 -0.02 0.81 16 36 H -0.01 -0.88 7.35 -2.39 -0.02 -0.90 16 37 H 0.27 15.53 8.31 -92.71 -0.77 14.75 16 38 H 0.14 3.05 7.06 -2.39 -0.02 3.03 16 39 H 0.12 3.61 4.03 -2.39 -0.01 3.60 16 40 H 0.10 1.69 7.77 -2.39 -0.02 1.67 16 41 H 0.12 1.38 6.71 -2.38 -0.02 1.36 16 42 H 0.04 1.59 5.93 -2.39 -0.01 1.58 16 43 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 44 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.15 7.89 -2.39 -0.02 1.13 16 46 H 0.02 0.70 7.86 -2.38 -0.02 0.68 16 47 H 0.10 1.67 8.14 -2.38 -0.02 1.65 16 48 H 0.10 1.97 8.13 -2.38 -0.02 1.95 16 49 H 0.13 1.59 6.79 -2.39 -0.02 1.58 16 Total: -1.00 -85.46 375.56 5.10 -80.36 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: 0.92 Total: 19.30 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 5.45 Total: 13.89 kcal Atomic # 7 Polarization: -101.21 SS G_CDS: -3.21 Total: -104.43 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -0.09 Total: -56.02 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -85.46 5.10 -80.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701277215.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.189 kcal (2) G-P(sol) polarization free energy of solvation -85.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds