Wall clock time and date at job start Fri Apr 10 2020 22:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21282 * 119.99832 * 2 1 4 4 N 1.34770 * 120.00107 * 180.02562 * 2 1 3 5 5 C 1.46931 * 120.63324 * 175.36142 * 4 2 1 6 6 C 1.53188 * 108.77529 * 126.41248 * 5 4 2 7 7 C 1.53043 * 109.33731 * 54.62282 * 6 5 4 8 8 C 1.53041 * 109.53614 * 298.67906 * 7 6 5 9 9 H 1.08999 * 109.49590 * 301.34861 * 8 7 6 10 10 C 1.50700 * 109.49190 * 181.28691 * 8 7 6 11 11 O 1.21282 * 120.00450 * 345.71901 * 10 8 7 12 12 N 1.34779 * 120.00013 * 165.72747 * 10 8 7 13 13 C 1.46495 * 120.00503 * 184.68667 * 12 10 8 14 14 C 1.50698 * 109.46836 * 269.99772 * 13 12 10 15 15 H 1.07997 * 120.00292 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00147 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00051 * 179.97438 * 16 14 13 18 18 Si 1.86800 * 119.99851 * 359.97438 * 16 14 13 19 19 H 1.48506 * 109.46713 * 270.00048 * 18 16 14 20 20 H 1.48497 * 109.47079 * 29.99721 * 18 16 14 21 21 H 1.48499 * 109.46887 * 150.00168 * 18 16 14 22 22 C 1.46501 * 119.99690 * 4.67587 * 12 10 8 23 23 C 1.52995 * 109.47533 * 267.69363 * 22 12 10 24 24 C 1.53000 * 109.47146 * 174.99778 * 23 22 12 25 25 C 1.53002 * 109.47244 * 295.00228 * 23 22 12 26 26 C 1.46924 * 120.63005 * 355.38443 * 4 2 1 27 27 H 1.09001 * 109.47180 * 273.93934 * 1 2 3 28 28 H 1.09006 * 109.47364 * 33.93523 * 1 2 3 29 29 H 1.08996 * 109.47388 * 153.93986 * 1 2 3 30 30 H 1.08998 * 109.58431 * 246.20353 * 5 4 2 31 31 H 1.09000 * 109.58355 * 6.48415 * 5 4 2 32 32 H 1.09001 * 109.49657 * 174.58633 * 6 5 4 33 33 H 1.08995 * 109.49937 * 294.65426 * 6 5 4 34 34 H 1.09004 * 109.48198 * 178.64812 * 7 6 5 35 35 H 1.09004 * 109.43478 * 58.68894 * 7 6 5 36 36 H 1.08996 * 109.47469 * 149.99478 * 13 12 10 37 37 H 1.09005 * 109.47138 * 29.99139 * 13 12 10 38 38 H 0.97003 * 119.99953 * 179.97438 * 17 16 14 39 39 H 1.09001 * 109.46895 * 27.69852 * 22 12 10 40 40 H 1.09007 * 109.47096 * 147.68971 * 22 12 10 41 41 H 1.09002 * 109.46820 * 55.00001 * 23 22 12 42 42 H 1.09002 * 109.47079 * 60.00382 * 24 23 22 43 43 H 1.09004 * 109.47136 * 180.02562 * 24 23 22 44 44 H 1.08996 * 109.47405 * 300.00320 * 24 23 22 45 45 H 1.08994 * 109.46980 * 179.97438 * 25 23 22 46 46 H 1.09002 * 109.47027 * 299.99647 * 25 23 22 47 47 H 1.08998 * 109.46962 * 59.99439 * 25 23 22 48 48 H 1.09007 * 109.58512 * 113.80089 * 26 4 2 49 49 H 1.09001 * 109.70680 * 353.44881 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1808 -1.1671 -0.0005 5 6 3.6465 -1.1854 -0.1028 6 6 4.2118 -2.0050 1.0614 7 6 3.5648 -3.3919 1.0660 8 6 2.0536 -3.2511 1.2625 9 1 1.8555 -2.7339 2.2014 10 6 1.4216 -4.6186 1.2985 11 8 2.0496 -5.5870 0.9260 12 7 0.1582 -4.7656 1.7444 13 6 -0.4209 -6.1048 1.8765 14 6 -1.0996 -6.4878 0.5867 15 1 -1.1000 -5.8022 -0.2478 16 6 -1.7203 -7.7137 0.4718 17 7 -2.3130 -8.0478 -0.6536 18 14 -1.7191 -8.8999 1.9148 19 1 -0.5229 -9.7763 1.8341 20 1 -1.6860 -8.1330 3.1860 21 1 -2.9473 -9.7335 1.8712 22 6 -0.6358 -3.5861 2.0974 23 6 -0.4699 -3.2871 3.5886 24 6 -1.1974 -1.9857 3.9319 25 6 -1.0636 -4.4348 4.4081 26 6 1.4638 -2.4455 0.1006 27 1 -0.3633 0.0706 1.0252 28 1 -0.3634 0.8527 -0.5737 29 1 -0.3634 -0.9231 -0.4514 30 1 3.9411 -1.6415 -1.0479 31 1 4.0288 -0.1658 -0.0542 32 1 5.2906 -2.1072 0.9442 33 1 3.9943 -1.4990 2.0020 34 1 3.9830 -3.9855 1.8790 35 1 3.7628 -3.8876 0.1156 36 1 -1.1510 -6.1068 2.6858 37 1 0.3693 -6.8221 2.0981 38 1 -2.7493 -8.9104 -0.7345 39 1 -0.2940 -2.7305 1.5150 40 1 -1.6867 -3.7772 1.8798 41 1 0.5897 -3.1837 3.8227 42 1 -2.2570 -2.0891 3.6978 43 1 -1.0788 -1.7724 4.9943 44 1 -0.7745 -1.1681 3.3481 45 1 -0.9449 -4.2219 5.4704 46 1 -2.1231 -4.5382 4.1740 47 1 -0.5453 -5.3619 4.1635 48 1 1.5806 -3.0045 -0.8279 49 1 0.4056 -2.2599 0.2847 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000701318301.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:27:37 Heat of formation + Delta-G solvation = -77.611138 kcal Electronic energy + Delta-G solvation = -28093.869911 eV Core-core repulsion = 24441.761992 eV Total energy + Delta-G solvation = -3652.107919 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 310.204 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.63609 -39.32863 -37.15935 -36.49177 -33.71510 -33.09714 -32.51024 -31.70088 -29.58044 -28.37472 -27.02387 -25.84049 -25.27896 -24.14241 -22.33950 -20.99985 -20.35747 -19.06265 -18.51928 -17.20388 -17.00991 -16.57156 -16.08437 -15.82600 -15.42999 -14.87944 -14.59570 -14.41301 -14.02698 -13.91249 -13.59984 -13.36186 -13.33399 -13.23209 -12.85959 -12.58853 -12.39194 -12.24878 -12.21446 -12.12549 -11.85220 -11.63109 -11.52257 -11.18998 -11.15662 -10.96633 -10.94381 -10.81675 -10.61204 -10.47862 -10.38015 -10.13201 -9.87244 -9.57147 -9.12519 -8.73312 -8.61876 -7.76797 -6.12466 -4.10779 2.48688 2.80257 3.24486 3.25444 3.30723 3.33246 3.69128 4.35565 4.41383 4.51243 4.73772 4.82316 4.89864 4.92145 4.99454 5.05511 5.11720 5.13413 5.16631 5.21066 5.26525 5.40607 5.42621 5.55390 5.65810 5.68390 5.69747 5.72570 5.79140 5.82079 5.84626 5.96340 6.00518 6.00874 6.09655 6.16075 6.32458 6.32917 6.39742 6.46948 6.70556 6.87910 7.25247 7.27338 7.57787 8.03214 8.16450 8.42205 8.85763 8.92029 9.47988 11.00908 Molecular weight = 310.20amu Principal moments of inertia in cm(-1) A = 0.014903 B = 0.004592 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.358665 B = 6096.701430 C = 6597.059992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.516 3.484 3 O -0.553 6.553 4 N -0.610 5.610 5 C 0.108 3.892 6 C -0.132 4.132 7 C -0.101 4.101 8 C -0.122 4.122 9 H 0.094 0.906 10 C 0.512 3.488 11 O -0.531 6.531 12 N -0.588 5.588 13 C 0.212 3.788 14 C -0.527 4.527 15 H 0.074 0.926 16 C 0.073 3.927 17 N -0.897 5.897 18 Si 0.873 3.127 19 H -0.274 1.274 20 H -0.266 1.266 21 H -0.285 1.285 22 C 0.106 3.894 23 C -0.115 4.115 24 C -0.144 4.144 25 C -0.152 4.152 26 C 0.109 3.891 27 H 0.095 0.905 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.264 0.736 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.058 0.942 47 H 0.066 0.934 48 H 0.081 0.919 49 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.524 14.431 6.930 16.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.305 3.695 3 O -0.431 6.431 4 N -0.343 5.343 5 C -0.015 4.015 6 C -0.170 4.170 7 C -0.139 4.139 8 C -0.144 4.144 9 H 0.112 0.888 10 C 0.298 3.702 11 O -0.408 6.408 12 N -0.318 5.318 13 C 0.091 3.909 14 C -0.565 4.565 15 H 0.092 0.908 16 C -0.129 4.129 17 N -0.536 5.536 18 Si 0.700 3.300 19 H -0.200 1.200 20 H -0.190 1.190 21 H -0.211 1.211 22 C -0.018 4.018 23 C -0.134 4.134 24 C -0.202 4.202 25 C -0.209 4.209 26 C -0.014 4.014 27 H 0.114 0.886 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.048 14.296 6.629 16.879 hybrid contribution -0.231 -0.907 0.698 1.167 sum 5.817 13.389 7.327 16.334 Atomic orbital electron populations 1.22031 0.91766 1.05171 1.05090 1.20815 0.90688 0.82863 0.75121 1.90688 1.70799 1.31025 1.50636 1.48181 1.07404 1.06011 1.72751 1.21643 0.79325 1.01965 0.98518 1.21926 1.00360 0.95964 0.98793 1.21345 0.92313 0.96239 1.03954 1.21729 0.97401 0.95038 1.00254 0.88830 1.20120 0.81981 0.89894 0.78234 1.90689 1.62414 1.41012 1.46644 1.47895 1.12149 1.08240 1.63563 1.19812 0.93914 0.79135 0.98000 1.21305 1.33958 1.02730 0.98509 0.90774 1.24839 0.94836 0.97583 0.95665 1.69889 1.36266 1.22169 1.25228 0.86904 0.77924 0.81834 0.83352 1.19968 1.19040 1.21084 1.21820 0.97929 0.88185 0.93853 1.21599 1.00104 0.95549 0.96189 1.21789 1.00758 0.96451 1.01218 1.21979 1.01418 0.98836 0.98644 1.21966 0.96846 0.83747 0.98811 0.88615 0.88725 0.89618 0.91298 0.88987 0.90387 0.91596 0.91035 0.90504 0.94363 0.94937 0.92575 0.91080 0.89487 0.91497 0.92262 0.92703 0.92926 0.93390 0.92331 0.91547 0.90101 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.61 9.47 36.00 0.34 -1.26 16 2 C 0.52 6.36 7.80 -10.99 -0.09 6.27 16 3 O -0.55 -8.72 16.51 5.56 0.09 -8.63 16 4 N -0.61 -7.11 2.97 -172.77 -0.51 -7.62 16 5 C 0.11 1.17 6.44 -3.71 -0.02 1.15 16 6 C -0.13 -1.33 6.08 -26.61 -0.16 -1.49 16 7 C -0.10 -1.26 4.54 -26.69 -0.12 -1.38 16 8 C -0.12 -1.62 1.85 -91.65 -0.17 -1.79 16 9 H 0.09 1.12 6.58 -51.93 -0.34 0.78 16 10 C 0.51 9.43 6.91 -10.98 -0.08 9.36 16 11 O -0.53 -12.21 15.65 5.56 0.09 -12.12 16 12 N -0.59 -10.84 2.32 -175.06 -0.41 -11.25 16 13 C 0.21 4.81 3.28 -5.20 -0.02 4.80 16 14 C -0.53 -14.35 9.94 -34.44 -0.34 -14.69 16 15 H 0.07 2.21 8.06 -52.49 -0.42 1.79 16 16 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 17 N -0.90 -26.90 13.96 55.43 0.77 -26.13 16 18 Si 0.87 20.90 27.47 -169.99 -4.67 16.23 16 19 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.27 -5.92 6.54 56.52 0.37 -5.55 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.11 1.47 4.55 -4.04 -0.02 1.45 16 23 C -0.11 -1.35 3.00 -90.62 -0.27 -1.63 16 24 C -0.14 -1.33 9.19 37.16 0.34 -0.99 16 25 C -0.15 -1.99 8.14 37.16 0.30 -1.69 16 26 C 0.11 1.32 5.14 -3.71 -0.02 1.30 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.09 0.69 6.19 -51.93 -0.32 0.37 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.09 1.05 7.00 -51.93 -0.36 0.69 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 35 H 0.08 1.06 7.99 -51.93 -0.41 0.65 16 36 H 0.04 0.83 4.77 -51.93 -0.25 0.58 16 37 H 0.03 0.81 6.92 -51.93 -0.36 0.45 16 38 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.07 0.81 4.05 -51.93 -0.21 0.60 16 40 H 0.09 1.29 8.09 -51.93 -0.42 0.87 16 41 H 0.07 0.79 7.14 -51.93 -0.37 0.42 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.03 5.71 -51.93 -0.30 0.74 16 48 H 0.08 1.08 8.14 -51.92 -0.42 0.66 16 49 H 0.10 1.09 2.89 -51.93 -0.15 0.94 16 LS Contribution 372.83 15.07 5.62 5.62 Total: -1.00 -33.92 372.83 -7.60 -41.51 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -8.16 Total: 1.03 kcal Atomic # 6 Polarization: 1.78 SS G_CDS: -0.42 Total: 1.36 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.15 Total: -45.00 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.18 Total: -20.75 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.67 Total: 16.23 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.92 -7.60 -41.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000701318301.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.099 kcal (2) G-P(sol) polarization free energy of solvation -33.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds